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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE FROM LISTERIA INNOCUA WITH GLUCOSE
Keywords TIM BARREL, HYDROLASE, BETA-1, 2-GLUCAN DEGRADATION, CYTOSOL
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4ZOD     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   LIN1840 PROTEIN  A 720 5562 0
2  Protein   LIN1840 PROTEIN  B 721 5570 0
3  Ligand   LIN1840 PROTEIN  A 8 0 49
4  Ligand   LIN1840 PROTEIN  B 7 0 50
5 Water     475 0 475
total       1931 11132 574
Proteins
Unit 1 MET1 GLU2 GLN3 GLU4 LYS5 VAL6 GLN7 GLU8 LEU9 VAL10 SER11 GLN12 MET13 THR14 LEU15 ASP16 GLU17 LYS18 ILE19 ALA20 GLN21 CYS22 LEU23 GLN24 LEU25 SER26 PRO27 PHE28 LEU29 PHE30 LYS31 GLY32 THR33 ASN34 LYS35 ASN36 ALA37 GLU38 LEU39 THR40 GLY41 PRO42 LEU43 LEU44 GLN45 GLU46 MET47 LYS48 LEU49 THR50 ASP51 ALA52 HIS53 THR54 GLU55 ASN56 ALA57 GLY58 SER59 VAL60 LEU61 GLY62 SER63 SER64 SER65 ALA66 LEU67 ASP68 MET69 ILE70 GLY71 ILE72 GLN73 GLU74 ALA75 TYR76 LEU77 LYS78 THR79 ASN80 ARG81 LEU82 GLY83 ILE84 PRO85 LEU86 VAL87 PHE88 MET89 ALA90 ASP91 VAL92 ILE93 HIS94 GLY95 TYR96 LYS97 THR98 VAL99 PHE100 PRO101 ILE102 PRO103 LEU104 ALA105 LEU106 GLY107 CYS108 SER109 PHE110 ASP111 ARG112 GLU113 THR114 VAL115 ARG116 VAL117 MET118 ALA119 GLU120 VAL121 SER122 ALA123 LEU124 GLU125 ALA126 THR127 ALA128 ASP129 GLY130 HIS131 HIS132 VAL133 THR134 PHE135 SER136 PRO137 MET138 LEU139 ASP140 LEU141 VAL142 ARG143 ASP144 PRO145 ARG146 TRP147 GLY148 ARG149 VAL150 MET151 GLU152 SER153 THR154 GLY155 GLU156 ASP157 PRO158 PHE159 LEU160 ASN161 SER162 GLU163 LEU164 GLY165 LYS166 ALA167 MET168 VAL169 ASP170 GLY171 TYR172 GLN173 GLY174 ASP175 ALA176 SER177 LYS178 LEU179 ASN180 GLU181 ASN182 LEU183 GLU184 GLN185 MET186 ALA187 ALA188 CYS189 VAL190 LYS191 HIS192 PHE193 ALA194 ALA195 TYR196 GLY197 ALA198 ALA199 GLU200 ALA201 GLY202 LEU203 GLU204 TYR205 ASN206 THR207 VAL208 ASN209 MET210 SER211 THR212 ARG213 GLU214 LEU215 TYR216 GLN217 ASN218 TYR219 LEU220 PRO221 ALA222 TYR223 ASN224 ALA225 ALA226 ILE227 GLN228 ALA229 GLY230 ALA231 LYS232 LEU233 VAL234 MET235 THR236 ALA237 PHE238 ASN239 VAL240 VAL241 ASP242 GLY243 ILE244 PRO245 ALA246 THR247 MET248 ASN249 LYS250 TRP251 LEU252 ASN253 ARG254 ASP255 VAL256 LEU257 ARG258 GLY259 GLU260 MET261 GLU262 PHE263 ASP264 GLY265 VAL266 LEU267 ILE268 SER269 ASP270 TRP271 GLY272 ALA273 VAL274 ALA275 GLU276 VAL277 ILE278 ASN279 HIS280 GLY281 THR282 ALA283 ARG284 ASN285 PRO286 LYS287 GLU288 ALA289 ALA290 GLN291 PHE292 SER293 MET294 GLU295 ALA296 GLY297 VAL298 ASP299 LEU300 GLU301 MET302 MET303 THR304 THR305 CYS306 TYR307 ILE308 HIS309 GLU310 LEU311 LYS312 GLY313 LEU314 ILE315 GLU316 GLU317 GLY318 LYS319 LEU320 SER321 GLU322 ASN323 LEU324 LEU325 ASP326 GLU327 ALA328 VAL329 LEU330 ARG331 MET332 LEU333 ASN334 LEU335 LYS336 ASN337 ASP338 LEU339 GLY340 LEU341 PHE342 GLU343 ASP344 PRO345 TYR346 ARG347 GLY348 LEU349 ARG354 THR355 LYS356 ASP357 ILE358 LEU359 THR360 ASP361 GLU362 SER363 ARG364 GLY365 LYS366 ALA367 ARG368 ALA369 ALA370 GLY371 VAL372 GLU373 SER374 ALA375 VAL376 LEU377 LEU378 GLU379 ASN380 LYS381 SER382 ARG383 LEU384 LEU385 PRO386 LEU387 ALA388 LYS389 GLU390 ALA391 LYS392 ILE393 ALA394 LEU395 VAL396 GLY397 PRO398 LEU399 ALA400 THR401 SER402 PRO403 ASP404 ILE405 LEU406 GLY407 GLY408 TRP409 ASN410 VAL411 TYR412 GLY413 GLU414 GLU415 LYS416 ASP417 GLY418 ILE419 ASN420 VAL421 GLU422 THR423 GLY424 LEU425 ARG426 GLU427 VAL428 PHE429 GLU430 THR431 VAL432 GLU433 VAL434 VAL435 SER436 THR437 GLU438 TYR439 THR440 GLU441 LEU442 SER443 GLU444 GLU445 ASP446 LYS447 VAL448 ALA449 VAL450 LYS451 ALA452 ALA453 VAL454 GLN455 ASN456 MET457 ASP458 VAL459 VAL460 VAL461 LEU462 ALA463 LEU464 GLY465 GLU466 LYS467 ASN468 GLU469 TRP470 GLY471 GLY472 GLU473 ALA474 GLY475 SER476 LEU477 ALA478 THR479 ILE480 ARG481 LEU482 PRO483 GLU484 ALA485 GLN486 TYR487 GLN488 LEU489 ALA490 LYS491 PHE492 VAL493 GLN494 THR495 LEU496 GLY497 LYS498 PRO499 VAL500 VAL501 ILE502 THR503 LEU504 PHE505 ASN506 GLY507 ARG508 PRO509 LEU510 GLU511 VAL512 LYS513 GLU514 LEU515 ALA516 GLU517 SER518 SER519 ASP520 ALA521 LEU522 LEU523 GLU524 LEU525 TRP526 PHE527 PRO528 GLY529 THR530 GLU531 ALA532 GLY533 ARG534 VAL535 THR536 ALA537 ASP538 LEU539 LEU540 SER541 GLY542 ALA543 SER544 ASN545 PRO546 SER547 GLY548 LYS549 LEU550 SER551 MET552 SER553 PHE554 PRO555 GLN556 THR557 THR558 GLY559 GLN560 ILE561 PRO562 VAL563 TYR564 TYR565 ASN566 HIS567 LEU568 ARG569 THR570 GLY571 ARG572 PRO573 GLN574 THR575 PRO576 GLU577 ASN578 LYS579 GLY580 GLU581 ARG582 TYR583 VAL584 SER585 HIS586 TYR587 LEU588 ASP589 ILE590 PRO591 ASN592 GLU593 PRO594 PHE595 TYR596 PRO597 PHE598 GLY599 TYR600 GLY601 LYS602 SER603 TYR604 SER605 GLU606 PHE607 GLU608 LEU609 LYS610 THR611 SER612 SER613 LEU614 PRO615 LYS616 GLU617 LEU618 ASN619 LEU620 GLY621 GLU622 SER623 LEU624 HIS625 VAL626 GLU627 VAL628 THR629 ILE630 LYS631 ASN632 ILE633 SER634 ASP635 ILE636 ALA637 GLY638 LYS639 GLU640 VAL641 ILE642 GLN643 VAL644 TYR645 LEU646 GLN647 ASP648 VAL649 THR650 ALA651 SER652 ILE653 SER654 ARG655 PRO656 VAL657 LYS658 GLU659 LEU660 LYS661 ALA662 PHE663 GLU664 LYS665 VAL666 ALA667 LEU668 GLN669 ALA670 GLY671 GLU672 GLU673 LYS674 THR675 VAL676 THR677 PHE678 GLU679 LEU680 THR681 SER682 GLU683 ALA684 PHE685 SER686 PHE687 TYR688 ASN689 HIS690 GLN691 LEU692 GLU693 LYS694 VAL695 GLN696 GLU697 PRO698 GLY699 LEU700 HIS701 ARG702 VAL703 PHE704 VAL705 GLY706 THR707 SER708 SER709 GLU710 ASP711 VAL712 ASP713 VAL714 PHE715 GLU716 VAL717 GLU718 VAL719 GLY720 GLY721 TYR722 VAL723 LEU724
Unit 2 MET1 GLU2 GLN3 GLU4 LYS5 VAL6 GLN7 GLU8 LEU9 VAL10 SER11 GLN12 MET13 THR14 LEU15 ASP16 GLU17 LYS18 ILE19 ALA20 GLN21 CYS22 LEU23 GLN24 LEU25 SER26 PRO27 PHE28 LEU29 PHE30 LYS31 GLY32 THR33 ASN34 LYS35 ASN36 ALA37 GLU38 LEU39 THR40 GLY41 PRO42 LEU43 LEU44 GLN45 GLU46 MET47 LYS48 LEU49 THR50 ASP51 ALA52 HIS53 THR54 GLU55 ASN56 ALA57 GLY58 SER59 VAL60 LEU61 GLY62 SER63 SER64 SER65 ALA66 LEU67 ASP68 MET69 ILE70 GLY71 ILE72 GLN73 GLU74 ALA75 TYR76 LEU77 LYS78 THR79 ASN80 ARG81 LEU82 GLY83 ILE84 PRO85 LEU86 VAL87 PHE88 MET89 ALA90 ASP91 VAL92 ILE93 HIS94 GLY95 TYR96 LYS97 THR98 VAL99 PHE100 PRO101 ILE102 PRO103 LEU104 ALA105 LEU106 GLY107 CYS108 SER109 PHE110 ASP111 ARG112 GLU113 THR114 VAL115 ARG116 VAL117 MET118 ALA119 GLU120 VAL121 SER122 ALA123 LEU124 GLU125 ALA126 THR127 ALA128 ASP129 GLY130 HIS131 HIS132 VAL133 THR134 PHE135 SER136 PRO137 MET138 LEU139 ASP140 LEU141 VAL142 ARG143 ASP144 PRO145 ARG146 TRP147 GLY148 ARG149 VAL150 MET151 GLU152 SER153 THR154 GLY155 GLU156 ASP157 PRO158 PHE159 LEU160 ASN161 SER162 GLU163 LEU164 GLY165 LYS166 ALA167 MET168 VAL169 ASP170 GLY171 TYR172 GLN173 GLY174 ASP175 ALA176 SER177 LYS178 LEU179 ASN180 GLU181 ASN182 LEU183 GLU184 GLN185 MET186 ALA187 ALA188 CYS189 VAL190 LYS191 HIS192 PHE193 ALA194 ALA195 TYR196 GLY197 ALA198 ALA199 GLU200 ALA201 GLY202 LEU203 GLU204 TYR205 ASN206 THR207 VAL208 ASN209 MET210 SER211 THR212 ARG213 GLU214 LEU215 TYR216 GLN217 ASN218 TYR219 LEU220 PRO221 ALA222 TYR223 ASN224 ALA225 ALA226 ILE227 GLN228 ALA229 GLY230 ALA231 LYS232 LEU233 VAL234 MET235 THR236 ALA237 PHE238 ASN239 VAL240 VAL241 ASP242 GLY243 ILE244 PRO245 ALA246 THR247 MET248 ASN249 LYS250 TRP251 LEU252 ASN253 ARG254 ASP255 VAL256 LEU257 ARG258 GLY259 GLU260 MET261 GLU262 PHE263 ASP264 GLY265 VAL266 LEU267 ILE268 SER269 ASP270 TRP271 GLY272 ALA273 VAL274 ALA275 GLU276 VAL277 ILE278 ASN279 HIS280 GLY281 THR282 ALA283 ARG284 ASN285 PRO286 LYS287 GLU288 ALA289 ALA290 GLN291 PHE292 SER293 MET294 GLU295 ALA296 GLY297 VAL298 ASP299 LEU300 GLU301 MET302 MET303 THR304 THR305 CYS306 TYR307 ILE308 HIS309 GLU310 LEU311 LYS312 GLY313 LEU314 ILE315 GLU316 GLU317 GLY318 LYS319 LEU320 SER321 GLU322 ASN323 LEU324 LEU325 ASP326 GLU327 ALA328 VAL329 LEU330 ARG331 MET332 LEU333 ASN334 LEU335 LYS336 ASN337 ASP338 LEU339 GLY340 LEU341 PHE342 GLU343 ASP344 PRO345 TYR346 ARG347 GLY348 LEU349 ASP353 ARG354 THR355 LYS356 ASP357 ILE358 LEU359 THR360 ASP361 GLU362 SER363 ARG364 GLY365 LYS366 ALA367 ARG368 ALA369 ALA370 GLY371 VAL372 GLU373 SER374 ALA375 VAL376 LEU377 LEU378 GLU379 ASN380 LYS381 SER382 ARG383 LEU384 LEU385 PRO386 LEU387 ALA388 LYS389 GLU390 ALA391 LYS392 ILE393 ALA394 LEU395 VAL396 GLY397 PRO398 LEU399 ALA400 THR401 SER402 PRO403 ASP404 ILE405 LEU406 GLY407 GLY408 TRP409 ASN410 VAL411 TYR412 GLY413 GLU414 GLU415 LYS416 ASP417 GLY418 ILE419 ASN420 VAL421 GLU422 THR423 GLY424 LEU425 ARG426 GLU427 VAL428 PHE429 GLU430 THR431 VAL432 GLU433 VAL434 VAL435 SER436 THR437 GLU438 TYR439 THR440 GLU441 LEU442 SER443 GLU444 GLU445 ASP446 LYS447 VAL448 ALA449 VAL450 LYS451 ALA452 ALA453 VAL454 GLN455 ASN456 MET457 ASP458 VAL459 VAL460 VAL461 LEU462 ALA463 LEU464 GLY465 GLU466 LYS467 ASN468 GLU469 TRP470 GLY471 GLY472 GLU473 ALA474 GLY475 SER476 LEU477 ALA478 THR479 ILE480 ARG481 LEU482 PRO483 GLU484 ALA485 GLN486 TYR487 GLN488 LEU489 ALA490 LYS491 PHE492 VAL493 GLN494 THR495 LEU496 GLY497 LYS498 PRO499 VAL500 VAL501 ILE502 THR503 LEU504 PHE505 ASN506 GLY507 ARG508 PRO509 LEU510 GLU511 VAL512 LYS513 GLU514 LEU515 ALA516 GLU517 SER518 SER519 ASP520 ALA521 LEU522 LEU523 GLU524 LEU525 TRP526 PHE527 PRO528 GLY529 THR530 GLU531 ALA532 GLY533 ARG534 VAL535 THR536 ALA537 ASP538 LEU539 LEU540 SER541 GLY542 ALA543 SER544 ASN545 PRO546 SER547 GLY548 LYS549 LEU550 SER551 MET552 SER553 PHE554 PRO555 GLN556 THR557 THR558 GLY559 GLN560 ILE561 PRO562 VAL563 TYR564 TYR565 ASN566 HIS567 LEU568 ARG569 THR570 GLY571 ARG572 PRO573 GLN574 THR575 PRO576 GLU577 ASN578 LYS579 GLY580 GLU581 ARG582 TYR583 VAL584 SER585 HIS586 TYR587 LEU588 ASP589 ILE590 PRO591 ASN592 GLU593 PRO594 PHE595 TYR596 PRO597 PHE598 GLY599 TYR600 GLY601 LYS602 SER603 TYR604 SER605 GLU606 PHE607 GLU608 LEU609 LYS610 THR611 SER612 SER613 LEU614 PRO615 LYS616 GLU617 LEU618 ASN619 LEU620 GLY621 GLU622 SER623 LEU624 HIS625 VAL626 GLU627 VAL628 THR629 ILE630 LYS631 ASN632 ILE633 SER634 ASP635 ILE636 ALA637 GLY638 LYS639 GLU640 VAL641 ILE642 GLN643 VAL644 TYR645 LEU646 GLN647 ASP648 VAL649 THR650 ALA651 SER652 ILE653 SER654 ARG655 PRO656 VAL657 LYS658 GLU659 LEU660 LYS661 ALA662 PHE663 GLU664 LYS665 VAL666 ALA667 LEU668 GLN669 ALA670 GLY671 GLU672 GLU673 LYS674 THR675 VAL676 THR677 PHE678 GLU679 LEU680 THR681 SER682 GLU683 ALA684 PHE685 SER686 PHE687 TYR688 ASN689 HIS690 GLN691 LEU692 GLU693 LYS694 VAL695 GLN696 GLU697 PRO698 GLY699 LEU700 HIS701 ARG702 VAL703 PHE704 VAL705 GLY706 THR707 SER708 SER709 GLU710 ASP711 VAL712 ASP713 VAL714 PHE715 GLU716 VAL717 GLU718 VAL719 GLY720 GLY721 TYR722 VAL723 LEU724
Ligands
Unit 3 BGC801 MG802 GOL803 GOL804 GOL805 PEG806 SO4807 GOL808
Unit 4 PEG801 BGC802 BGC803 MG804 GOL805 GOL806 GOL807
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany