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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF THE BRAT-NHL DOMAIN BOUND TO CONSENSUS RNA MOTI
Keywords NHL-DOMAIN, BETA-PROPELLER, RNA BINDING, TRANSLATIONAL REPRE TRANSLATION
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

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Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   BRAIN TUMOR PROTEIN  A 278 4337 0
2  RNA    C 14 414 0
3  Protein   BRAIN TUMOR PROTEIN  B 278 4353 0
4  Ligand   BRAIN TUMOR PROTEIN  A 7 0 88
5  Ligand   BRAIN TUMOR PROTEIN  B 5 0 84
6 Water     338 0 338
total       920 9104 510

Proteins
Unit 1 GLN758 ILE759 LYS760 ARG761 GLN762 LYS763 MET764 ILE765 TYR766 HIS767 CYS768 LYS769 PHE770 GLY771 GLU772 PHE773 GLY774 VAL775 MET776 GLU777 GLY778 GLN779 PHE780 THR781 GLU782 PRO783 SER784 GLY785 VAL786 ALA787 VAL788 ASN789 ALA790 GLN791 ASN792 ASP793 ILE794 ILE795 VAL796 ALA797 ASP798 THR799 ASN800 ASN801 HIS802 ARG803 ILE804 GLN805 ILE806 PHE807 ASP808 LYS809 GLU810 GLY811 ARG812 PHE813 LYS814 PHE815 GLN816 PHE817 GLY818 GLU819 CYS820 GLY821 LYS822 ARG823 ASP824 GLN826 LEU827 LEU828 TYR829 PRO830 ASN831 ARG832 VAL833 ALA834 VAL835 VAL836 ARG837 ASN838 SER839 GLY840 ASP841 ILE842 ILE843 VAL844 THR845 GLU846 ARG847 SER848 PRO849 THR850 HIS851 GLN852 ILE853 GLN854 ILE855 TYR856 ASN857 GLN858 TYR859 GLY860 GLN861 PHE862 VAL863 ARG864 LYS865 PHE866 GLY867 ALA868 THR869 ILE870 LEU871 GLN872 HIS873 PRO874 ARG875 GLY876 VAL877 THR878 VAL879 ASP880 ASN881 LYS882 GLY883 ARG884 ILE885 ILE886 VAL887 VAL888 GLU889 CYS890 LYS891 VAL892 MET893 ARG894 VAL895 ILE896 ILE897 PHE898 ASP899 GLN900 ASN901 GLY902 ASN903 VAL904 LEU905 HIS906 LYS907 PHE908 GLY909 CYS910 SER911 LYS912 HIS913 LEU914 GLU915 PHE916 PRO917 ASN918 GLY919 VAL920 VAL921 VAL922 ASN923 ASP924 LYS925 GLN926 GLU927 ILE928 PHE929 ILE930 SER931 ASP932 ASN933 ARG934 ALA935 HIS936 CYS937 VAL938 LYS939 VAL940 PHE941 ASN942 TYR943 GLU944 GLY945 GLN946 TYR947 LEU948 ARG949 GLN950 ILE951 GLY952 GLY953 GLU954 GLY955 ILE956 THR957 ASN958 TYR959 PRO960 ILE961 GLY962 VAL963 GLY964 ILE965 ASN966 SER967 ASN968 GLY969 GLU970 ILE971 LEU972 ILE973 ALA974 ASP975 ASN976 HIS977 ASN978 ASN979 PHE980 ASN981 LEU982 THR983 ILE984 PHE985 THR986 GLN987 ASP988 GLY989 GLN990 LEU991 ILE992 SER993 ALA994 LEU995 GLU996 SER997 LYS998 VAL999 LYS1000 HIS1001 ALA1002 GLN1003 CYS1004 PHE1005 ASP1006 VAL1007 ALA1008 LEU1009 MET1010 ASP1011 ASP1012 GLY1013 SER1014 VAL1015 VAL1016 LEU1017 ALA1018 SER1019 LYS1020 ASP1021 TYR1022 ARG1023 LEU1024 TYR1025 ILE1026 TYR1027 ARG1028 TYR1029 VAL1030 GLN1031 LEU1032 ALA1033 PRO1034 VAL1035 GLY1036
Unit 3 GLN758 ILE759 LYS760 ARG761 GLN762 LYS763 MET764 ILE765 TYR766 HIS767 CYS768 LYS769 PHE770 GLY771 GLU772 PHE773 GLY774 VAL775 MET776 GLU777 GLY778 GLN779 PHE780 THR781 GLU782 PRO783 SER784 GLY785 VAL786 ALA787 VAL788 ASN789 ALA790 GLN791 ASN792 ASP793 ILE794 ILE795 VAL796 ALA797 ASP798 THR799 ASN800 ASN801 HIS802 ARG803 ILE804 GLN805 ILE806 PHE807 ASP808 LYS809 GLU810 GLY811 ARG812 PHE813 LYS814 PHE815 GLN816 PHE817 GLY818 GLU819 CYS820 GLY821 LYS822 ARG823 ASP824 SER825 GLN826 LEU827 LEU828 TYR829 PRO830 ASN831 ARG832 VAL833 ALA834 VAL835 VAL836 ARG837 ASN838 SER839 GLY840 ASP841 ILE842 ILE843 VAL844 THR845 GLU846 ARG847 SER848 PRO849 THR850 HIS851 GLN852 ILE853 GLN854 ILE855 TYR856 ASN857 GLN858 TYR859 GLY860 GLN861 PHE862 VAL863 ARG864 LYS865 PHE866 GLY867 ALA868 THR869 ILE870 LEU871 GLN872 HIS873 PRO874 ARG875 GLY876 VAL877 THR878 VAL879 ASP880 ASN881 LYS882 GLY883 ARG884 ILE885 ILE886 VAL887 VAL888 GLU889 CYS890 LYS891 VAL892 MET893 ARG894 VAL895 ILE896 ILE897 PHE898 ASP899 GLN900 ASN901 GLY902 ASN903 VAL904 LEU905 HIS906 LYS907 PHE908 GLY909 CYS910 SER911 LYS912 HIS913 LEU914 GLU915 PHE916 PRO917 ASN918 GLY919 VAL920 VAL921 VAL922 ASN923 ASP924 LYS925 GLN926 GLU927 ILE928 PHE929 ILE930 SER931 ASP932 ASN933 ARG934 ALA935 HIS936 CYS937 VAL938 LYS939 VAL940 PHE941 ASN942 TYR943 GLU944 GLY945 GLN946 TYR947 LEU948 ARG949 GLN950 ILE951 GLY952 GLY953 GLU954 GLY955 ILE956 THR957 ASN958 TYR959 PRO960 ILE961 GLY962 VAL963 GLY964 ILE965 ASN966 SER967 ASN968 GLY969 GLU970 ILE971 LEU972 ILE973 ALA974 ASP975 ASN976 HIS977 ASN978 ASN979 PHE980 ASN981 LEU982 THR983 ILE984 PHE985 THR986 GLN987 ASP988 GLY989 GLN990 LEU991 ILE992 SER993 ALA994 LEU995 GLU996 SER997 LYS998 VAL999 LYS1000 HIS1001 ALA1002 GLN1003 CYS1004 PHE1005 ASP1006 VAL1007 ALA1008 LEU1009 MET1010 ASP1011 ASP1012 GLY1013 SER1014 VAL1015 VAL1016 LEU1017 ALA1018 SER1019 LYS1020 ASP1021 TYR1022 ARG1023 LEU1024 TYR1025 ILE1026 TYR1027 ARG1028 TYR1029 VAL1030 GLN1031 LEU1032 ALA1033 PRO1034 VAL1035

Nucleic acids
Unit 2 U1 U2 G3 U4 U5 G6 U7 U8 U9 U10 U11 U12 U13 U14

Ligands
Unit 4 PE41101 SO41102 SO41103 SO41104 SO41105 SO41106 SO41107
Unit 5 PG41101 1PE1102 SO41103 SO41104 SO41105

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany