4ZAK - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE MCD1D/DB06-1/INKTCR TERNARY COMPLEX
• Keywords: MHC-FOLD, IG-FOLD, GLYCOLIPID ANTIGEN PRESENTATION, T CELL R IMMUNE SYSTEM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4ZAK	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	ANTIGEN-PRESENTING GLYCOPROTEIN CD1D1	A	267	2072	0
2	Protein	BETA-2-MICROGLOBULIN	B	98	758	0
3	Protein		C	203	1529	0
4	Protein	T CELL ANTIGEN RECEPTOR BETA CHAIN 8.2,T-CELL REC BETA-2 CHAIN C REGION,PROTEIN TRBC2,T-CELL RECEPTOR BETA-2 REGION	D	239	1865	0
5	Ligand		E	2	0	28
6	Ligand	ANTIGEN-PRESENTING GLYCOPROTEIN CD1D1	A	3	0	88
total				812	6224	116

Proteins

Unit 1	ASN 7 TYR 8 THR 9 PHE 10 ARG 11 CYS 12 LEU 13 GLN 14 MET 15 SER 16 SER 17 PHE 18 ALA 19 ASN 20 ARG 21 SER 22 TRP 23 SER 24 ARG 25 THR 26 ASP 27 SER 28 VAL 29 VAL 30 TRP 31 LEU 32 GLY 33 ASP 34 LEU 35 GLN 36 THR 37 HIS 38 ARG 39 TRP 40 SER 41 ASN 42 ASP 43 SER 44 ALA 45 THR 46 ILE 47 SER 48 PHE 49 THR 50 LYS 51 PRO 52 TRP 53 SER 54 GLN 55 GLY 56 LYS 57 LEU 58 SER 59 ASN 60 GLN 61 GLN 62 TRP 63 GLU 64 LYS 65 LEU 66 GLN 67 HIS 68 MET 69 PHE 70 GLN 71 VAL 72 TYR 73 ARG 74 VAL 75 SER 76 PHE 77 THR 78 ARG 79 ASP 80 ILE 81 GLN 82 GLU 83 LEU 84 VAL 85 LYS 86 MET 87 MET 88 SER 89 PRO 90 LYS 91 GLU 92 ASP 93 TYR 94 PRO 95 ILE 96 GLU 97 ILE 98 GLN 99 LEU 100 SER 101 ALA 102 GLY 103 CYS 104 GLU 105 MET 106 TYR 107 PRO 108 GLY 109 ASN 110 ALA 111 SER 112 GLU 113 SER 114 PHE 115 LEU 116 HIS 117 VAL 118 ALA 119 PHE 120 GLN 121 GLY 122 LYS 123 TYR 124 VAL 125 VAL 126 ARG 127 PHE 128 TRP 129 GLY 130 THR 131 SER 132 TRP 133 GLN 134 THR 135 VAL 136 PRO 137 GLY 138 ALA 139 PRO 140 SER 141 TRP 142 LEU 143 ASP 144 LEU 145 PRO 146 ILE 147 LYS 148 VAL 149 LEU 150 ASN 151 ALA 152 ASP 153 GLN 154 GLY 155 THR 156 SER 157 ALA 158 THR 159 VAL 160 GLN 161 MET 162 LEU 163 LEU 164 ASN 165 ASP 166 THR 167 CYS 168 PRO 169 LEU 170 PHE 171 VAL 172 ARG 173 GLY 174 LEU 175 LEU 176 GLU 177 ALA 178 GLY 179 LYS 180 SER 181 ASP 182 LEU 183 GLU 184 LYS 185 GLN 186 GLU 187 LYS 188 PRO 189 VAL 190 ALA 191 TRP 192 LEU 193 SER 194 SER 195 VAL 196 PRO 197 ARG 204 GLN 205 LEU 206 VAL 207 CYS 208 HIS 209 VAL 210 SER 211 GLY 212 PHE 213 TYR 214 PRO 215 LYS 216 PRO 217 VAL 218 TRP 219 VAL 220 MET 221 TRP 222 MET 223 ARG 224 GLY 225 ASP 226 GLN 227 GLU 228 GLN 229 GLN 230 GLY 231 THR 232 HIS 233 ARG 234 GLY 235 ASP 236 PHE 237 LEU 238 PRO 239 ASN 240 ALA 241 ASP 242 GLU 243 THR 244 TRP 245 TYR 246 LEU 247 GLN 248 ALA 249 THR 250 LEU 251 ASP 252 VAL 253 GLU 254 ALA 255 GLY 256 GLU 257 GLU 258 ALA 259 GLY 260 LEU 261 ALA 262 CYS 263 ARG 264 VAL 265 LYS 266 HIS 267 SER 268 SER 269 LEU 270 GLY 271 GLY 272 GLN 273 ASP 274 ILE 275 ILE 276 LEU 277 TYR 278 TRP 279
Unit 2	GLN 2 LYS 3 THR 4 PRO 5 GLN 6 ILE 7 GLN 8 VAL 9 TYR 10 SER 11 ARG 12 HIS 13 PRO 14 PRO 15 GLU 16 ASN 17 GLY 18 LYS 19 PRO 20 ASN 21 ILE 22 LEU 23 ASN 24 CYS 25 TYR 26 VAL 27 THR 28 GLN 29 PHE 30 HIS 31 PRO 32 PRO 33 HIS 34 ILE 35 GLU 36 ILE 37 GLN 38 MET 39 LEU 40 LYS 41 ASN 42 GLY 43 LYS 44 LYS 45 ILE 46 PRO 47 LYS 48 VAL 49 GLU 50 MET 51 SER 52 ASP 53 MET 54 SER 55 PHE 56 SER 57 LYS 58 ASP 59 TRP 60 SER 61 PHE 62 TYR 63 ILE 64 LEU 65 ALA 66 HIS 67 THR 68 GLU 69 PHE 70 THR 71 PRO 72 THR 73 GLU 74 THR 75 ASP 76 THR 77 TYR 78 ALA 79 CYS 80 ARG 81 VAL 82 LYS 83 HIS 84 ALA 85 SER 86 MET 87 ALA 88 GLU 89 PRO 90 LYS 91 THR 92 VAL 93 TYR 94 TRP 95 ASP 96 ARG 97 ASP 98 MET 99
Unit 3	THR 2 GLN 3 VAL 4 GLU 5 GLN 6 SER 7 PRO 8 GLN 9 SER 10 LEU 11 VAL 12 VAL 13 ARG 14 GLN 15 GLY 16 GLU 17 ASN 18 CYS 19 VAL 20 LEU 21 GLN 22 CYS 23 ASN 24 TYR 25 SER 26 VAL 27 THR 28 PRO 29 ASP 30 ASN 31 HIS 32 LEU 33 ARG 34 TRP 35 PHE 36 LYS 37 GLN 38 ASP 39 THR 40 GLY 41 LYS 42 GLY 43 LEU 44 VAL 45 SER 46 LEU 47 THR 48 VAL 49 LEU 50 VAL 51 ASP 52 GLN 53 LYS 54 ASP 55 LYS 56 THR 57 SER 58 ASN 59 GLY 60 ARG 61 TYR 62 SER 63 ALA 64 THR 65 LEU 66 ASP 67 LYS 68 ASP 69 ALA 70 LYS 71 HIS 72 SER 73 THR 74 LEU 75 HIS 76 ILE 77 THR 78 ALA 79 THR 80 LEU 81 LEU 82 ASP 83 ASP 84 THR 85 ALA 86 THR 87 TYR 88 ILE 89 CYS 90 VAL 91 VAL 92 GLY 93 ASP 94 ARG 95 GLY 96 SER 97 ALA 98 LEU 99 GLY 100 ARG 101 LEU 102 HIS 103 PHE 104 GLY 105 ALA 106 GLY 107 THR 108 GLN 109 LEU 110 ILE 111 VAL 112 ILE 113 PRO 114 ASP 115 ILE 116 GLN 117 ASN 118 PRO 119 ASP 120 PRO 121 ALA 122 VAL 123 TYR 124 GLN 125 LEU 126 ARG 127 ASP 128 SER 129 LYS 130 SER 131 SER 132 ASP 133 LYS 134 SER 135 VAL 136 CYS 137 LEU 138 PHE 139 THR 140 ASP 141 PHE 142 ASP 143 SER 144 GLN 145 THR 146 ASN 147 VAL 148 SER 149 GLN 150 SER 151 LYS 152 ASP 153 SER 154 ASP 155 VAL 156 TYR 157 ILE 158 THR 159 ASP 160 LYS 161 CYS 162 VAL 163 LEU 164 ASP 165 MET 166 ARG 167 SER 168 MET 169 ASP 170 PHE 171 LYS 172 SER 173 ASN 174 SER 175 ALA 176 VAL 177 ALA 178 TRP 179 SER 180 ASN 181 LYS 182 SER 183 ASP 184 PHE 185 ALA 186 CYS 187 ALA 188 ASN 189 ALA 190 PHE 191 ASN 192 ASN 193 SER 194 ILE 195 ILE 196 PRO 197 GLU 198 ASP 199 THR 200 PHE 201 PHE 202 PRO 203 SER 204
Unit 4	ALA 2 ALA 3 VAL 4 THR 5 GLN 6 SER 7 PRO 8 ARG 9 ASN 10 LYS 11 VAL 12 ALA 13 VAL 14 THR 15 GLY 16 GLY 17 LYS 18 VAL 19 THR 20 LEU 21 SER 22 CYS 23 ASN 24 GLN 25 THR 26 ASN 27 ASN 28 HIS 29 ASN 30 ASN 31 MET 32 TYR 33 TRP 34 TYR 35 ARG 36 GLN 37 ASP 38 THR 39 GLY 40 HIS 41 GLY 42 LEU 43 ARG 44 LEU 45 ILE 46 HIS 47 TYR 48 SER 49 TYR 50 GLY 51 ALA 52 GLY 53 SER 54 THR 55 GLU 56 LYS 57 GLY 58 ASP 59 ILE 60 PRO 61 ASP 62 GLY 63 TYR 64 LYS 65 ALA 66 SER 67 ARG 68 PRO 69 SER 70 GLN 71 GLU 72 ASN 73 PHE 74 SER 75 LEU 76 ILE 77 LEU 78 GLU 79 LEU 80 ALA 81 THR 82 PRO 83 SER 84 GLN 85 THR 86 SER 87 VAL 88 TYR 89 PHE 90 CYS 91 ALA 92 SER 93 GLY 94 ASP 95 GLU 96 GLY 97 TYR 98 THR 99 GLN 100 TYR 101 PHE 102 GLY 103 PRO 104 GLY 105 THR 106 ARG 107 LEU 108 LEU 109 VAL 110 LEU 111 GLU 112 ASP 113 LEU 114 ARG 115 ASN 116 VAL 117 THR 118 PRO 119 PRO 120 LYS 121 VAL 122 SER 123 LEU 124 PHE 125 GLU 126 PRO 127 SER 128 LYS 129 ALA 130 GLU 131 ILE 132 SER 133 HIS 134 THR 135 GLN 136 LYS 137 ALA 138 THR 139 LEU 140 VAL 141 CYS 142 LEU 143 ALA 144 THR 145 GLY 146 PHE 147 TYR 148 PRO 149 ASP 150 HIS 151 VAL 152 GLU 153 LEU 154 SER 155 TRP 156 TRP 157 VAL 158 ASN 159 GLY 160 LYS 161 GLU 162 VAL 163 HIS 164 SER 165 GLY 166 VAL 167 CYS 168 THR 169 ASP 170 PRO 171 GLN 172 PRO 173 LEU 174 LYS 175 GLU 176 GLN 177 PRO 178 ALA 179 LEU 180 ASN 181 ASP 182 SER 183 ARG 184 TYR 185 SER 186 LEU 187 SER 188 SER 189 ARG 190 LEU 191 ARG 192 VAL 193 SER 194 ALA 195 THR 196 PHE 197 TRP 198 GLN 199 ASN 200 PRO 201 ARG 202 ASN 203 HIS 204 PHE 205 ARG 206 CYS 207 GLN 208 VAL 209 GLN 210 PHE 211 TYR 212 GLY 213 LEU 214 SER 215 GLU 216 ASN 217 ASP 218 GLU 219 TRP 220 THR 221 GLN 222 ASP 223 ARG 224 ALA 225 LYS 226 PRO 227 VAL 228 THR 229 GLN 230 ILE 231 VAL 232 SER 233 ALA 234 GLU 235 ALA 236 TRP 237 GLY 238 ARG 239 ALA 240

Ligands

Unit 5	NAG 1 NAG 2
Unit 6	NAG 301 NAG 302 4LX 305