4Z89 - Sequence, Chains, Asymmetric and Biological Units

• Title: SH3-II OF DROSOPHILA RIM-BINDING PROTEIN BOUND TO A CACOPHON PEPTIDE
• Keywords: SYNAPSE, ACTIVE ZONE, SH3 DOMAIN, RIM-BINDING PROTEIN, CACOP PEPTIDE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4Z89	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	RIM-BINDING PROTEIN, ISOFORM F	A	65	528	0
2	Protein	RIM-BINDING PROTEIN, ISOFORM F	B	65	528	0
3	Protein	RIM-BINDING PROTEIN, ISOFORM F	C	66	538	0
4	Protein	RIM-BINDING PROTEIN, ISOFORM F	D	65	528	0
5	Protein	RIM-BINDING PROTEIN, ISOFORM F	E	66	538	0
6	Protein	RIM-BINDING PROTEIN, ISOFORM F	F	66	538	0
7	Protein	RIM-BINDING PROTEIN, ISOFORM F	G	66	538	0
8	Protein	RIM-BINDING PROTEIN, ISOFORM F	H	64	517	0
9	Protein	RIM-BINDING PROTEIN, ISOFORM F	I	65	522	0
10	Protein	RIM-BINDING PROTEIN, ISOFORM F	J	66	538	0
11	Protein		a	12	90	0
12	Protein		b	10	77	0
13	Protein		c	12	90	0
14	Protein		d	12	90	0
15	Protein		e	11	76	3
16	Protein		f	10	70	3
17	Protein		g	8	62	0
18	Protein		h	8	62	0
19	Protein		i	8	62	0
20	Protein		j	12	90	0
21	Ligand	RIM-BINDING PROTEIN, ISOFORM F	B	1	0	1
22	Water			130	0	134
total				888	6082	141

Proteins

Unit 1	PHE 1317 ARG 1318 TYR 1319 PHE 1320 VAL 1321 ALA 1322 MET 1323 PHE 1324 ASP 1325 TYR 1326 ASP 1327 PRO 1328 SER 1329 THR 1330 MET 1331 SER 1332 PRO 1333 ASN 1334 PRO 1335 ASP 1336 GLY 1337 CYS 1338 ASP 1339 GLU 1340 GLU 1341 LEU 1342 PRO 1343 PHE 1344 GLN 1345 GLU 1346 GLY 1347 ASP 1348 THR 1349 ILE 1350 LYS 1351 VAL 1352 PHE 1353 GLY 1354 ASP 1355 LYS 1356 ASP 1357 ALA 1358 ASP 1359 GLY 1360 PHE 1361 TYR 1362 TRP 1363 GLY 1364 GLU 1365 LEU 1366 ARG 1367 GLY 1368 ARG 1369 ARG 1370 GLY 1371 TYR 1372 VAL 1373 PRO 1374 HIS 1375 ASN 1376 MET 1377 VAL 1378 SER 1379 GLU 1380 VAL 1381
Unit 2	PHE 1317 ARG 1318 TYR 1319 PHE 1320 VAL 1321 ALA 1322 MET 1323 PHE 1324 ASP 1325 TYR 1326 ASP 1327 PRO 1328 SER 1329 THR 1330 MET 1331 SER 1332 PRO 1333 ASN 1334 PRO 1335 ASP 1336 GLY 1337 CYS 1338 ASP 1339 GLU 1340 GLU 1341 LEU 1342 PRO 1343 PHE 1344 GLN 1345 GLU 1346 GLY 1347 ASP 1348 THR 1349 ILE 1350 LYS 1351 VAL 1352 PHE 1353 GLY 1354 ASP 1355 LYS 1356 ASP 1357 ALA 1358 ASP 1359 GLY 1360 PHE 1361 TYR 1362 TRP 1363 GLY 1364 GLU 1365 LEU 1366 ARG 1367 GLY 1368 ARG 1369 ARG 1370 GLY 1371 TYR 1372 VAL 1373 PRO 1374 HIS 1375 ASN 1376 MET 1377 VAL 1378 SER 1379 GLU 1380 VAL 1381
Unit 3	PHE 1317 ARG 1318 TYR 1319 PHE 1320 VAL 1321 ALA 1322 MET 1323 PHE 1324 ASP 1325 TYR 1326 ASP 1327 PRO 1328 SER 1329 THR 1330 MET 1331 SER 1332 PRO 1333 ASN 1334 PRO 1335 ASP 1336 GLY 1337 CYS 1338 ASP 1339 GLU 1340 GLU 1341 LEU 1342 PRO 1343 PHE 1344 GLN 1345 GLU 1346 GLY 1347 ASP 1348 THR 1349 ILE 1350 LYS 1351 VAL 1352 PHE 1353 GLY 1354 ASP 1355 LYS 1356 ASP 1357 ALA 1358 ASP 1359 GLY 1360 PHE 1361 TYR 1362 TRP 1363 GLY 1364 GLU 1365 LEU 1366 ARG 1367 GLY 1368 ARG 1369 ARG 1370 GLY 1371 TYR 1372 VAL 1373 PRO 1374 HIS 1375 ASN 1376 MET 1377 VAL 1378 SER 1379 GLU 1380 VAL 1381 GLU 1382
Unit 4	PHE 1317 ARG 1318 TYR 1319 PHE 1320 VAL 1321 ALA 1322 MET 1323 PHE 1324 ASP 1325 TYR 1326 ASP 1327 PRO 1328 SER 1329 THR 1330 MET 1331 SER 1332 PRO 1333 ASN 1334 PRO 1335 ASP 1336 GLY 1337 CYS 1338 ASP 1339 GLU 1340 GLU 1341 LEU 1342 PRO 1343 PHE 1344 GLN 1345 GLU 1346 GLY 1347 ASP 1348 THR 1349 ILE 1350 LYS 1351 VAL 1352 PHE 1353 GLY 1354 ASP 1355 LYS 1356 ASP 1357 ALA 1358 ASP 1359 GLY 1360 PHE 1361 TYR 1362 TRP 1363 GLY 1364 GLU 1365 LEU 1366 ARG 1367 GLY 1368 ARG 1369 ARG 1370 GLY 1371 TYR 1372 VAL 1373 PRO 1374 HIS 1375 ASN 1376 MET 1377 VAL 1378 SER 1379 GLU 1380 VAL 1381
Unit 5	PHE 1317 ARG 1318 TYR 1319 PHE 1320 VAL 1321 ALA 1322 MET 1323 PHE 1324 ASP 1325 TYR 1326 ASP 1327 PRO 1328 SER 1329 THR 1330 MET 1331 SER 1332 PRO 1333 ASN 1334 PRO 1335 ASP 1336 GLY 1337 CYS 1338 ASP 1339 GLU 1340 GLU 1341 LEU 1342 PRO 1343 PHE 1344 GLN 1345 GLU 1346 GLY 1347 ASP 1348 THR 1349 ILE 1350 LYS 1351 VAL 1352 PHE 1353 GLY 1354 ASP 1355 LYS 1356 ASP 1357 ALA 1358 ASP 1359 GLY 1360 PHE 1361 TYR 1362 TRP 1363 GLY 1364 GLU 1365 LEU 1366 ARG 1367 GLY 1368 ARG 1369 ARG 1370 GLY 1371 TYR 1372 VAL 1373 PRO 1374 HIS 1375 ASN 1376 MET 1377 VAL 1378 SER 1379 GLU 1380 VAL 1381 GLU 1382
Unit 6	PHE 1317 ARG 1318 TYR 1319 PHE 1320 VAL 1321 ALA 1322 MET 1323 PHE 1324 ASP 1325 TYR 1326 ASP 1327 PRO 1328 SER 1329 THR 1330 MET 1331 SER 1332 PRO 1333 ASN 1334 PRO 1335 ASP 1336 GLY 1337 CYS 1338 ASP 1339 GLU 1340 GLU 1341 LEU 1342 PRO 1343 PHE 1344 GLN 1345 GLU 1346 GLY 1347 ASP 1348 THR 1349 ILE 1350 LYS 1351 VAL 1352 PHE 1353 GLY 1354 ASP 1355 LYS 1356 ASP 1357 ALA 1358 ASP 1359 GLY 1360 PHE 1361 TYR 1362 TRP 1363 GLY 1364 GLU 1365 LEU 1366 ARG 1367 GLY 1368 ARG 1369 ARG 1370 GLY 1371 TYR 1372 VAL 1373 PRO 1374 HIS 1375 ASN 1376 MET 1377 VAL 1378 SER 1379 GLU 1380 VAL 1381 GLU 1382
Unit 7	PHE 1317 ARG 1318 TYR 1319 PHE 1320 VAL 1321 ALA 1322 MET 1323 PHE 1324 ASP 1325 TYR 1326 ASP 1327 PRO 1328 SER 1329 THR 1330 MET 1331 SER 1332 PRO 1333 ASN 1334 PRO 1335 ASP 1336 GLY 1337 CYS 1338 ASP 1339 GLU 1340 GLU 1341 LEU 1342 PRO 1343 PHE 1344 GLN 1345 GLU 1346 GLY 1347 ASP 1348 THR 1349 ILE 1350 LYS 1351 VAL 1352 PHE 1353 GLY 1354 ASP 1355 LYS 1356 ASP 1357 ALA 1358 ASP 1359 GLY 1360 PHE 1361 TYR 1362 TRP 1363 GLY 1364 GLU 1365 LEU 1366 ARG 1367 GLY 1368 ARG 1369 ARG 1370 GLY 1371 TYR 1372 VAL 1373 PRO 1374 HIS 1375 ASN 1376 MET 1377 VAL 1378 SER 1379 GLU 1380 VAL 1381 GLU 1382
Unit 8	ARG 1318 TYR 1319 PHE 1320 VAL 1321 ALA 1322 MET 1323 PHE 1324 ASP 1325 TYR 1326 ASP 1327 PRO 1328 SER 1329 THR 1330 MET 1331 SER 1332 PRO 1333 ASN 1334 PRO 1335 ASP 1336 GLY 1337 CYS 1338 ASP 1339 GLU 1340 GLU 1341 LEU 1342 PRO 1343 PHE 1344 GLN 1345 GLU 1346 GLY 1347 ASP 1348 THR 1349 ILE 1350 LYS 1351 VAL 1352 PHE 1353 GLY 1354 ASP 1355 LYS 1356 ASP 1357 ALA 1358 ASP 1359 GLY 1360 PHE 1361 TYR 1362 TRP 1363 GLY 1364 GLU 1365 LEU 1366 ARG 1367 GLY 1368 ARG 1369 ARG 1370 GLY 1371 TYR 1372 VAL 1373 PRO 1374 HIS 1375 ASN 1376 MET 1377 VAL 1378 SER 1379 GLU 1380 VAL 1381
Unit 9	PHE 1317 ARG 1318 TYR 1319 PHE 1320 VAL 1321 ALA 1322 MET 1323 PHE 1324 ASP 1325 TYR 1326 ASP 1327 PRO 1328 SER 1329 THR 1330 MET 1331 SER 1332 PRO 1333 ASN 1334 PRO 1335 ASP 1336 GLY 1337 CYS 1338 ASP 1339 GLU 1340 GLU 1341 LEU 1342 PRO 1343 PHE 1344 GLN 1345 GLU 1346 GLY 1347 ASP 1348 THR 1349 ILE 1350 LYS 1351 VAL 1352 PHE 1353 GLY 1354 ASP 1355 LYS 1356 ASP 1357 ALA 1358 ASP 1359 GLY 1360 PHE 1361 TYR 1362 TRP 1363 GLY 1364 GLU 1365 LEU 1366 ARG 1367 GLY 1368 ARG 1369 ARG 1370 GLY 1371 TYR 1372 VAL 1373 PRO 1374 HIS 1375 ASN 1376 MET 1377 VAL 1378 SER 1379 GLU 1380 VAL 1381
Unit 10	PHE 1317 ARG 1318 TYR 1319 PHE 1320 VAL 1321 ALA 1322 MET 1323 PHE 1324 ASP 1325 TYR 1326 ASP 1327 PRO 1328 SER 1329 THR 1330 MET 1331 SER 1332 PRO 1333 ASN 1334 PRO 1335 ASP 1336 GLY 1337 CYS 1338 ASP 1339 GLU 1340 GLU 1341 LEU 1342 PRO 1343 PHE 1344 GLN 1345 GLU 1346 GLY 1347 ASP 1348 THR 1349 ILE 1350 LYS 1351 VAL 1352 PHE 1353 GLY 1354 ASP 1355 LYS 1356 ASP 1357 ALA 1358 ASP 1359 GLY 1360 PHE 1361 TYR 1362 TRP 1363 GLY 1364 GLU 1365 LEU 1366 ARG 1367 GLY 1368 ARG 1369 ARG 1370 GLY 1371 TYR 1372 VAL 1373 PRO 1374 HIS 1375 ASN 1376 MET 1377 VAL 1378 SER 1379 GLU 1380 VAL 1381 GLU 1382
Unit 11	GLY 1686 ARG 1687 ARG 1688 LEU 1689 PRO 1690 PRO 1691 THR 1692 PRO 1693 SER 1694 LYS 1695 PRO 1696 SER 1697
Unit 12	GLY 1686 ARG 1687 ARG 1688 LEU 1689 PRO 1690 PRO 1691 THR 1692 PRO 1693 SER 1694 LYS 1695
Unit 13	GLY 1686 ARG 1687 ARG 1688 LEU 1689 PRO 1690 PRO 1691 THR 1692 PRO 1693 SER 1694 LYS 1695 PRO 1696 SER 1697
Unit 14	GLY 1686 ARG 1687 ARG 1688 LEU 1689 PRO 1690 PRO 1691 THR 1692 PRO 1693 SER 1694 LYS 1695 PRO 1696 SER 1697
Unit 15	ACE 1684 ILE 1685 GLY 1686 ARG 1687 ARG 1688 LEU 1689 PRO 1690 PRO 1691 THR 1692 PRO 1693 SER 1694
Unit 16	ACE 1684 ILE 1685 GLY 1686 ARG 1687 ARG 1688 LEU 1689 PRO 1690 PRO 1691 THR 1692 PRO 1693
Unit 17	GLY 1686 ARG 1687 ARG 1688 LEU 1689 PRO 1690 PRO 1691 THR 1692 PRO 1693
Unit 18	GLY 1686 ARG 1687 ARG 1688 LEU 1689 PRO 1690 PRO 1691 THR 1692 PRO 1693
Unit 19	GLY 1686 ARG 1687 ARG 1688 LEU 1689 PRO 1690 PRO 1691 THR 1692 PRO 1693
Unit 20	GLY 1686 ARG 1687 ARG 1688 LEU 1689 PRO 1690 PRO 1691 THR 1692 PRO 1693 SER 1694 LYS 1695 PRO 1696 SER 1697

Ligands

Unit 21

CA 1401