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Sequence, Chains, Asymmetric and Biological Units

Title S13 COMPLEX
Keywords IMMUNE RECEPTOR-LIGAND COMPLEX, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4Z7U     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   MHC CLASS II HLA-DQ-ALPHA CHAIN  A 182 1450 0
2  Protein   MHC CLASS II HLA-DQ-BETA-1  B 169 1345 0
3  Protein   MHC CLASS II HLA-DQ-ALPHA CHAIN  C 182 1454 0
4  Protein   MHC CLASS II HLA-DQ-BETA-1  D 172 1354 0
5  Protein   T-CELL RECEPTOR, S13 ALPHA CHAIN  E 198 1533 0
6  Protein   T-CELL RECEPTOR, S13 BETA CHAIN  F 244 1904 0
7  Protein   T-CELL RECEPTOR, S13 ALPHA CHAIN  G 198 1525 0
8  Protein   T-CELL RECEPTOR, S13 BETA CHAIN  H 244 1905 0
9  Protein   DEAMIDATED DQ8-GLIA-ALPHA1 PEPTIDE  I 15 107 0
10  Protein   DEAMIDATED DQ8-GLIA-ALPHA1 PEPTIDE  J 16 112 0
11  Ligand    K 4 0 48
12  Ligand    L 4 0 48
13  Ligand   MHC CLASS II HLA-DQ-ALPHA CHAIN  A 1 0 14
14  Ligand   MHC CLASS II HLA-DQ-ALPHA CHAIN  C 1 0 14
15 Water     263 0 263
total       1893 12689 387
Proteins
Unit 1 ASP0 ILE1 VAL2 ALA3 ASP4 HIS5 VAL6 ALA7 SER8 TYR9 GLY9A VAL10 ASN11 LEU12 TYR13 GLN14 SER15 TYR16 GLY17 PRO18 SER19 GLY20 GLN21 TYR22 SER23 HIS24 GLU25 PHE26 ASP27 GLY28 ASP29 GLU30 GLU31 PHE32 TYR33 VAL34 ASP35 LEU36 GLU37 ARG38 LYS39 GLU40 THR41 VAL42 TRP43 GLN44 LEU45 PRO46 LEU47 PHE48 ARG49 ARG50 PHE51 ARG52 ARG53 PHE54 ASP55 PRO56 GLN57 PHE58 ALA59 LEU60 THR61 ASN62 ILE63 ALA64 VAL65 LEU66 LYS67 HIS68 ASN69 LEU70 ASN71 ILE72 VAL73 ILE74 LYS75 ARG76 SER77 ASN78 SER79 THR80 ALA81 ALA82 THR83 ASN84 GLU85 VAL86 PRO87 GLU88 VAL89 THR90 VAL91 PHE92 SER93 LYS94 SER95 PRO96 VAL97 THR98 LEU99 GLY100 GLN101 PRO102 ASN103 THR104 LEU105 ILE106 CYS107 LEU108 VAL109 ASP110 ASN111 ILE112 PHE113 PRO114 PRO115 VAL116 VAL117 ASN118 ILE119 THR120 TRP121 LEU122 SER123 ASN124 GLY125 HIS126 SER127 VAL128 THR129 GLU130 GLY131 VAL132 SER133 GLU134 THR135 SER136 PHE137 LEU138 SER139 LYS140 SER141 ASP142 HIS143 SER144 PHE145 PHE146 LYS147 ILE148 SER149 TYR150 LEU151 THR152 PHE153 LEU154 PRO155 SER156 ALA157 ASP158 GLU159 ILE160 TYR161 ASP162 CYS163 LYS164 VAL165 GLU166 HIS167 TRP168 GLY169 LEU170 ASP171 GLU172 PRO173 LEU174 LEU175 LYS176 HIS177 TRP178 GLU179 PRO180
Unit 2 ASP2 SER3 PRO4 GLU5 ASP6 PHE7 VAL8 TYR9 GLN10 PHE11 LYS12 GLY13 MET14 CYS15 TYR16 PHE17 THR18 ASN19 GLY20 THR21 GLU22 ARG23 VAL24 ARG25 LEU26 VAL27 THR28 ARG29 TYR30 ILE31 TYR32 ASN33 ARG34 GLU35 GLU36 TYR37 ALA38 ARG39 PHE40 ASP41 SER42 ASP43 VAL44 GLY45 VAL46 TYR47 ARG48 ALA49 VAL50 THR51 PRO52 LEU53 GLY54 PRO55 PRO56 ALA57 ALA58 GLU59 TYR60 TRP61 ASN62 SER63 GLN64 LYS65 GLU66 VAL67 LEU68 GLU69 ARG70 THR71 ARG72 ALA73 GLU74 LEU75 ASP76 THR77 VAL78 CYS79 ARG80 HIS81 ASN82 TYR83 GLN84 LEU85 GLU86 LEU87 ARG88 THR89 THR90 LEU91 GLN92 ARG93 ARG94 VAL95 GLU96 PRO97 THR98 VAL99 THR100 ILE101 SER102 PRO103 LEU114 LEU115 VAL116 CYS117 SER118 VAL119 THR120 ASP121 PHE122 TYR123 PRO124 ALA125 GLN126 ILE127 LYS128 VAL129 ARG130 TRP131 GLN136 GLU137 GLU138 THR139 THR140 GLY141 VAL142 VAL143 SER144 THR145 PRO146 LEU147 ILE148 ARG149 ASN150 GLY151 ASP152 TRP153 THR154 PHE155 GLN156 ILE157 LEU158 VAL159 MET160 LEU161 GLU162 MET163 ASP169 VAL170 TYR171 THR172 CYS173 HIS174 VAL175 GLU176 HIS177 PRO178 SER179 LEU180 GLN181 ASN182 PRO183 ILE184 ILE185 VAL186 GLU187 TRP188 ARG189
Unit 3 ASP-1 ILE0 VAL1 ALA2 ASP3 HIS4 VAL5 ALA6 SER7 TYR8 GLY9 VAL10 ASN11 LEU12 TYR13 GLN14 SER15 TYR16 GLY17 PRO18 SER19 GLY20 GLN21 TYR22 SER23 HIS24 GLU25 PHE26 ASP27 GLY28 ASP29 GLU30 GLU31 PHE32 TYR33 VAL34 ASP35 LEU36 GLU37 ARG38 LYS39 GLU40 THR41 VAL42 TRP43 GLN44 LEU45 PRO46 LEU47 PHE48 ARG49 ARG50 PHE51 ARG52 ARG53 PHE54 ASP55 PRO56 GLN57 PHE58 ALA59 LEU60 THR61 ASN62 ILE63 ALA64 VAL65 LEU66 LYS67 HIS68 ASN69 LEU70 ASN71 ILE72 VAL73 ILE74 LYS75 ARG76 SER77 ASN78 SER79 THR80 ALA81 ALA82 THR83 ASN84 GLU85 VAL86 PRO87 GLU88 VAL89 THR90 VAL91 PHE92 SER93 LYS94 SER95 PRO96 VAL97 THR98 LEU99 GLY100 GLN101 PRO102 ASN103 THR104 LEU105 ILE106 CYS107 LEU108 VAL109 ASP110 ASN111 ILE112 PHE113 PRO114 PRO115 VAL116 VAL117 ASN118 ILE119 THR120 TRP121 LEU122 SER123 ASN124 GLY125 HIS126 SER127 VAL128 THR129 GLU130 GLY131 VAL132 SER133 GLU134 THR135 SER136 PHE137 LEU138 SER139 LYS140 SER141 ASP142 HIS143 SER144 PHE145 PHE146 LYS147 ILE148 SER149 TYR150 LEU151 THR152 PHE153 LEU154 PRO155 SER156 ALA157 ASP158 GLU159 ILE160 TYR161 ASP162 CYS163 LYS164 VAL165 GLU166 HIS167 TRP168 GLY169 LEU170 ASP171 GLU172 PRO173 LEU174 LEU175 LYS176 HIS177 TRP178 GLU179 PRO180
Unit 4 ASP2 SER3 PRO4 GLU5 ASP6 PHE7 VAL8 TYR9 GLN10 PHE11 LYS12 GLY13 MET14 CYS15 TYR16 PHE17 THR18 ASN19 GLY20 THR21 GLU22 ARG23 VAL24 ARG25 LEU26 VAL27 THR28 ARG29 TYR30 ILE31 TYR32 ASN33 ARG34 GLU35 GLU36 TYR37 ALA38 ARG39 PHE40 ASP41 SER42 ASP43 VAL44 GLY45 VAL46 TYR47 ARG48 ALA49 VAL50 THR51 PRO52 LEU53 GLY54 PRO55 PRO56 ALA57 ALA58 GLU59 TYR60 TRP61 ASN62 SER63 GLN64 LYS65 GLU66 VAL67 LEU68 GLU69 ARG70 THR71 ARG72 ALA73 GLU74 LEU75 ASP76 THR77 VAL78 CYS79 ARG80 HIS81 ASN82 TYR83 GLN84 LEU85 GLU86 LEU87 ARG88 THR89 THR90 LEU91 GLN92 ARG93 ARG94 VAL95 GLU96 PRO97 THR98 VAL99 THR100 ILE101 SER102 PRO103 SER104 LEU114 LEU115 VAL116 CYS117 SER118 VAL119 THR120 ASP121 PHE122 TYR123 PRO124 ALA125 GLN126 ILE127 LYS128 VAL129 ARG130 TRP131 GLN136 GLU137 GLU138 THR139 THR140 GLY141 VAL142 VAL143 SER144 THR145 PRO146 LEU147 ILE148 ARG149 ASN150 GLY151 ASP152 TRP153 THR154 PHE155 GLN156 ILE157 LEU158 VAL159 MET160 LEU161 GLU162 MET163 ARG167 GLY168 ASP169 VAL170 TYR171 THR172 CYS173 HIS174 VAL175 GLU176 HIS177 PRO178 SER179 LEU180 GLN181 ASN182 PRO183 ILE184 ILE185 VAL186 GLU187 TRP188 ARG189
Unit 5 ASP1 ALA2 LYS3 THR4 THR5 GLN6 PRO8 ASN9 SER10 MET11 GLU12 SER13 ASN14 GLU15 GLU16 GLU17 PRO18 VAL19 HIS20 LEU21 PRO22 CYS23 ASN24 HIS25 SER26 THR27 ILE28 SER29 GLY30 THR36 ASP37 TYR38 ILE39 HIS40 TRP41 TYR42 ARG43 GLN44 LEU45 PRO46 SER47 GLN48 GLY49 PRO50 GLU51 TYR52 VAL53 ILE54 HIS55 GLY56 LEU57 THR58 SER64 ASN65 VAL66 ASN67 ASN68 ARG74 MET75 ALA76 SER77 LEU78 ALA79 ILE80 ALA81 GLU82 ASP83 ARG84 LYS85 SER86 SER87 THR88 LEU89 ILE90 LEU91 HIS92 ARG93 ALA94 THR95 LEU96 ARG97 ASP98 ALA99 ALA100 VAL101 TYR102 TYR103 CYS104 ILE105 LEU106 ARG107 ASP108 ARG109 SER113 ASN114 GLN115 PHE116 TYR117 PHE118 GLY119 THR120 GLY121 THR122 SER123 LEU124 THR125 VAL126 ILE127 PRO128 ASN129 ILE130 GLN131 ASN132 PRO133 ASP134 PRO135 ALA136 VAL137 TYR138 GLN139 LEU140 ARG141 ASP142 SER143 LYS144 SER145 SER146 ASP147 LYS148 SER149 VAL150 CYS151 LEU152 PHE153 THR154 ASP155 PHE156 ASP157 SER158 GLN159 THR160 ASN161 VAL162 SER163 GLN164 SER165 LYS166 ASP167 SER168 ASP169 VAL170 TYR171 ILE172 THR173 ASP174 LYS175 CYS176 VAL177 LEU178 ASP179 MET180 ARG181 SER182 MET183 ASP184 PHE185 LYS186 SER187 ASN188 SER189 ALA190 VAL191 ALA192 TRP193 SER194 ASN195 LYS196 SER197 ASP198 PHE199 ALA200 CYS201 ALA202 ASN203 ALA204 PHE205 ASN206 ASN207 SER208 ILE209 ILE210 PRO211 GLU212 ASP213 THR214 PHE215 PHE216 PRO217
Unit 6 ASP1 SER2 GLY3 VAL4 THR5 GLN6 THR7 PRO8 LYS9 HIS10 LEU11 ILE12 THR13 ALA14 THR15 GLY16 GLN17 ARG18 VAL19 THR20 LEU21 ARG22 CYS23 SER24 PRO25 ARG26 SER27 GLY28 ASP29 LEU37 SER38 VAL39 TYR40 TRP41 TYR42 GLN43 GLN44 SER45 LEU46 ASP47 GLN48 GLY49 LEU50 GLN51 PHE52 LEU53 ILE54 GLN55 TYR56 TYR57 ASN58 GLY63 GLU64 GLU65 ARG66 ALA67 LYS68 GLY69 ASN70 ILE71 LEU72 GLU74 ARG75 PHE76 SER77 ALA78 GLN79 GLN80 PHE81 PRO83 ASP84 LEU85 HIS86 SER87 GLU88 LEU89 ASN90 LEU91 SER92 SER93 LEU94 GLU95 LEU96 GLY97 ASP98 SER99 ALA100 LEU101 TYR102 PHE103 CYS104 ALA105 SER106 SER107 THR108 THR109 PRO110 GLY111 GLY112 THR112A THR113 GLU114 THR115 GLN116 TYR117 PHE118 GLY119 PRO120 GLY121 THR122 ARG123 LEU124 LEU125 VAL126 LEU127 GLU128 ASP129 LEU130 LYS131 ASN132 VAL133 PHE134 PRO135 PRO136 GLU137 VAL138 ALA139 VAL140 PHE141 GLU142 PRO143 SER144 GLU145 ALA146 GLU147 ILE148 SER149 HIS150 THR151 GLN152 LYS153 ALA154 THR155 LEU156 VAL157 CYS158 LEU159 ALA160 THR161 GLY162 PHE163 TYR164 PRO165 ASP166 HIS167 VAL168 GLU169 LEU170 SER171 TRP172 TRP173 VAL174 ASN175 GLY176 LYS177 GLU178 VAL179 HIS180 SER181 GLY182 VAL183 CYS184 THR185 ASP186 PRO187 GLN188 PRO189 LEU190 LYS191 GLU192 GLN193 PRO194 ALA195 LEU196 ASN197 ASP198 SER199 ARG200 TYR201 ALA202 LEU203 SER204 SER205 ARG206 LEU207 ARG208 VAL209 SER210 ALA211 THR212 PHE213 TRP214 GLN215 ASN216 PRO217 ARG218 ASN219 HIS220 PHE221 ARG222 CYS223 GLN224 VAL225 GLN226 PHE227 TYR228 GLY229 LEU230 SER231 GLU232 ASN233 ASP234 GLU235 TRP236 THR237 GLN238 ASP239 ARG240 ALA241 LYS242 PRO243 VAL244 THR245 GLN246 ILE247 VAL248 SER249 ALA250 GLU251 ALA252 TRP253 GLY254 ARG255 ALA256
Unit 7 ASP1 ALA2 LYS3 THR4 THR5 GLN6 PRO8 ASN9 SER10 MET11 GLU12 SER13 ASN14 GLU15 GLU16 GLU17 PRO18 VAL19 HIS20 LEU21 PRO22 CYS23 ASN24 HIS25 SER26 THR27 ILE28 SER29 GLY30 THR36 ASP37 TYR38 ILE39 HIS40 TRP41 TYR42 ARG43 GLN44 LEU45 PRO46 SER47 GLN48 GLY49 PRO50 GLU51 TYR52 VAL53 ILE54 HIS55 GLY56 LEU57 THR58 SER64 ASN65 VAL66 ASN67 ASN68 ARG74 MET75 ALA76 SER77 LEU78 ALA79 ILE80 ALA81 GLU82 ASP83 ARG84 LYS85 SER86 SER87 THR88 LEU89 ILE90 LEU91 HIS92 ARG93 ALA94 THR95 LEU96 ARG97 ASP98 ALA99 ALA100 VAL101 TYR102 TYR103 CYS104 ILE105 LEU106 ARG107 ASP108 ARG109 SER113 ASN114 GLN115 PHE116 TYR117 PHE118 GLY119 THR120 GLY121 THR122 SER123 LEU124 THR125 VAL126 ILE127 PRO128 ASN129 ILE130 GLN131 ASN132 PRO133 ASP134 PRO135 ALA136 VAL137 TYR138 GLN139 LEU140 ARG141 ASP142 SER143 LYS144 SER145 SER146 ASP147 LYS148 SER149 VAL150 CYS151 LEU152 PHE153 THR154 ASP155 PHE156 ASP157 SER158 GLN159 THR160 ASN161 VAL162 SER163 GLN164 SER165 LYS166 ASP167 SER168 ASP169 VAL170 TYR171 ILE172 THR173 ASP174 LYS175 CYS176 VAL177 LEU178 ASP179 MET180 ARG181 SER182 MET183 ASP184 PHE185 LYS186 SER187 ASN188 SER189 ALA190 VAL191 ALA192 TRP193 SER194 ASN195 LYS196 SER197 ASP198 PHE199 ALA200 CYS201 ALA202 ASN203 ALA204 PHE205 ASN206 ASN207 SER208 ILE209 ILE210 PRO211 GLU212 ASP213 THR214 PHE215 PHE216 PRO217
Unit 8 ASP1 SER2 GLY3 VAL4 THR5 GLN6 THR7 PRO8 LYS9 HIS10 LEU11 ILE12 THR13 ALA14 THR15 GLY16 GLN17 ARG18 VAL19 THR20 LEU21 ARG22 CYS23 SER24 PRO25 ARG26 SER27 GLY28 ASP29 LEU37 SER38 VAL39 TYR40 TRP41 TYR42 GLN43 GLN44 SER45 LEU46 ASP47 GLN48 GLY49 LEU50 GLN51 PHE52 LEU53 ILE54 GLN55 TYR56 TYR57 ASN58 GLY63 GLU64 GLU65 ARG66 ALA67 LYS68 GLY69 ASN70 ILE71 LEU72 GLU74 ARG75 PHE76 SER77 ALA78 GLN79 GLN80 PHE81 PRO83 ASP84 LEU85 HIS86 SER87 GLU88 LEU89 ASN90 LEU91 SER92 SER93 LEU94 GLU95 LEU96 GLY97 ASP98 SER99 ALA100 LEU101 TYR102 PHE103 CYS104 ALA105 SER106 SER107 THR108 THR109 PRO110 GLY111 GLY112 THR112A THR113 GLU114 THR115 GLN116 TYR117 PHE118 GLY119 PRO120 GLY121 THR122 ARG123 LEU124 LEU125 VAL126 LEU127 GLU128 ASP129 LEU130 LYS131 ASN132 VAL133 PHE134 PRO135 PRO136 GLU137 VAL138 ALA139 VAL140 PHE141 GLU142 PRO143 SER144 GLU145 ALA146 GLU147 ILE148 SER149 HIS150 THR151 GLN152 LYS153 ALA154 THR155 LEU156 VAL157 CYS158 LEU159 ALA160 THR161 GLY162 PHE163 TYR164 PRO165 ASP166 HIS167 VAL168 GLU169 LEU170 SER171 TRP172 TRP173 VAL174 ASN175 GLY176 LYS177 GLU178 VAL179 HIS180 SER181 GLY182 VAL183 CYS184 THR185 ASP186 PRO187 GLN188 PRO189 LEU190 LYS191 GLU192 GLN193 PRO194 ALA195 LEU196 ASN197 ASP198 SER199 ARG200 TYR201 ALA202 LEU203 SER204 SER205 ARG206 LEU207 ARG208 VAL209 SER210 ALA211 THR212 PHE213 TRP214 GLN215 ASN216 PRO217 ARG218 ASN219 HIS220 PHE221 ARG222 CYS223 GLN224 VAL225 GLN226 PHE227 TYR228 GLY229 LEU230 SER231 GLU232 ASN233 ASP234 GLU235 TRP236 THR237 GLN238 ASP239 ARG240 ALA241 LYS242 PRO243 VAL244 THR245 GLN246 ILE247 VAL248 SER249 ALA250 GLU251 ALA252 TRP253 GLY254 ARG255 ALA256
Unit 9 PRO0 SER1 GLY2 GLU3 GLY4 SER5 PHE6 GLN7 PRO8 SER9 GLN10 GLU11 ASN12 PRO13 GLN14
Unit 10 ALA-1 PRO0 SER1 GLY2 GLU3 GLY4 SER5 PHE6 GLN7 PRO8 SER9 GLN10 GLU11 ASN12 PRO13 GLN14
Ligands
Unit 11 NAG1 FUC2 NAG3 FUC4
Unit 12 NAG1 FUC2 NAG3 FUC4
Unit 13 NAG1000
Unit 14 NAG1000
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany