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Sequence, Chains, Asymmetric and Biological Units

Title QUINOLONE(MOXIFLOXACIN)-DNA CLEAVAGE COMPLEX OF TOPOISOMERAS S. PNEUMONIAE
Keywords TOPO IV, CLEAVAGE COMPLEX, DNA, QUINOLONE, ISOMERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4Z3O     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DNA TOPOISOMERASE 4 SUBUNIT B,PARE30-PARC55 FUSED FROM S. PNEUMONIAE  A 689 5136 0
2  Protein   DNA TOPOISOMERASE 4 SUBUNIT B,PARE30-PARC55 FUSED FROM S. PNEUMONIAE  B 689 5111 0
3  Other macromolecule   E-SITE DNA  E 7 140 0
4  Other macromolecule   E-SITE DNA  F 11 225 0
5  Other macromolecule   E-SITE DNA  G 7 139 0
6  Other macromolecule   E-SITE DNA  H 11 226 0
7  Ligand   DNA TOPOISOMERASE 4 SUBUNIT B,PARE30-PARC55 FUSED FROM S. PNEUMONIAE  A 2 0 2
8  Ligand   DNA TOPOISOMERASE 4 SUBUNIT B,PARE30-PARC55 FUSED FROM S. PNEUMONIAE  B 2 0 2
9  Ligand   E-SITE DNA  F 1 0 29
10  Ligand   E-SITE DNA  H 1 0 29
11 Water     14 0 14
total       1434 10977 76
Proteins
Unit 1 LYS415 LEU416 THR417 PRO418 ALA419 GLN420 SER421 LYS422 ASN423 PRO424 ALA425 LYS426 ASN427 GLU428 LEU429 TYR430 LEU431 VAL432 GLU433 GLY434 ASP435 SER436 ALA437 GLY438 GLY439 SER440 ALA441 LYS442 GLN443 GLY444 ARG445 ASP446 ARG447 LYS448 PHE449 GLN450 ALA451 ILE452 LEU453 PRO454 LEU455 ARG456 GLY457 LYS458 VAL459 ILE460 ASN461 THR462 ALA463 LYS464 ALA465 LYS466 MET467 ALA468 ASP469 ILE470 LEU471 LYS472 ASN473 GLU474 GLU475 ILE476 ASN477 THR478 MET479 ILE480 TYR481 THR482 ILE483 GLY484 ALA485 GLY486 VAL487 GLY488 ALA489 ASP490 PHE491 SER492 ILE493 GLU494 ASP495 ALA496 ASN497 TYR498 ASP499 LYS500 ILE501 ILE502 ILE503 MET504 THR505 ASP506 ALA507 ASP508 THR509 ASP510 GLY511 ALA512 HIS513 ILE514 GLN515 THR516 LEU517 LEU518 LEU519 THR520 PHE521 PHE522 TYR523 ARG524 TYR525 MET526 ARG527 PRO528 LEU529 VAL530 GLU531 ALA532 GLY533 HIS534 VAL535 TYR536 ILE537 ALA538 LEU539 PRO540 PRO541 LEU542 TYR543 LYS544 TYR557 ALA558 TRP559 THR560 ASP561 GLY562 GLU563 LEU564 GLU565 GLU566 LEU567 ARG568 LYS569 LEU577 GLN578 ARG579 TYR580 LYS581 GLY582 LEU583 GLY584 GLU585 MET586 ASN587 ALA588 ASP589 GLN590 LEU591 TRP592 GLU593 THR594 THR595 MET596 ASN597 PRO598 GLU599 THR600 ARG601 THR602 LEU603 ILE604 ARG605 VAL606 THR607 ILE608 GLU609 ASP610 LEU611 ALA612 ARG613 ALA614 GLU615 ARG616 ARG617 VAL618 ASN619 VAL620 LEU621 MET622 GLY623 ASP624 LYS625 VAL626 GLU627 PRO628 ARG629 ARG630 LYS631 TRP632 ILE633 GLU634 ASP635 ASN636 VAL637 LYS638 PHE639 THR640 ASN1003 ILE1004 GLN1005 ASN1006 MET1007 SER1008 LEU1009 GLU1010 ASP1011 ILE1012 MET1013 GLY1014 GLU1015 ARG1016 PHE1017 GLY1018 ARG1019 TYR1020 SER1021 LYS1022 TYR1023 ILE1024 ILE1025 GLN1026 ASP1027 ARG1028 ALA1029 LEU1030 PRO1031 ASP1032 ILE1033 ARG1034 ASP1035 GLY1036 LEU1037 LYS1038 PRO1039 VAL1040 GLN1041 ARG1042 ARG1043 ILE1044 LEU1045 TYR1046 SER1047 MET1048 ASN1049 LYS1050 ASP1051 SER1052 ASN1053 THR1054 PHE1055 ASP1056 LYS1057 SER1058 TYR1059 ARG1060 LYS1061 SER1062 ALA1063 LYS1064 SER1065 VAL1066 GLY1067 ASN1068 ILE1069 MET1070 GLY1071 ASN1072 PHE1073 HIS1074 PRO1075 HIS1076 GLY1077 ASP1078 SER1079 SER1080 ILE1081 TYR1082 ASP1083 ALA1084 MET1085 VAL1086 ARG1087 MET1088 SER1089 GLN1090 ASN1091 TRP1092 LYS1093 ASN1094 ARG1095 GLU1096 ILE1097 LEU1098 VAL1099 GLU1100 MET1101 HIS1102 GLY1103 ASN1104 ASN1105 GLY1106 SER1107 MET1108 ASP1109 GLY1110 ASP1111 PRO1112 PRO1113 ALA1114 ALA1115 MET1116 ARG1117 TYR1118 THR1119 GLU1120 ALA1121 ARG1122 LEU1123 SER1124 GLU1125 ILE1126 ALA1127 GLY1128 TYR1129 LEU1130 LEU1131 GLN1132 ASP1133 ILE1134 GLU1135 LYS1136 LYS1137 THR1138 VAL1139 PRO1140 PHE1141 ALA1142 TRP1143 ASN1144 PHE1145 ASP1146 ASP1147 THR1148 GLU1149 LYS1150 GLU1151 PRO1152 THR1153 VAL1154 LEU1155 PRO1156 ALA1157 ALA1158 PHE1159 PRO1160 ASN1161 LEU1162 LEU1163 VAL1164 ASN1165 GLY1166 SER1167 THR1168 GLY1169 ILE1170 SER1171 ALA1172 GLY1173 TYR1174 ALA1175 THR1176 ASP1177 ILE1178 PRO1179 PRO1180 HIS1181 ASN1182 LEU1183 ALA1184 GLU1185 VAL1186 ILE1187 ASP1188 ALA1189 ALA1190 VAL1191 TYR1192 MET1193 ILE1194 ASP1195 HIS1196 PRO1197 THR1198 ALA1199 LYS1200 ILE1201 ASP1202 LYS1203 LEU1204 MET1205 GLU1206 PHE1207 LEU1208 PRO1209 GLY1210 PRO1211 ASP1212 PHE1213 PRO1214 THR1215 GLY1216 ALA1217 ILE1218 ILE1219 GLN1220 GLY1221 ARG1222 ASP1223 GLU1224 ILE1225 LYS1226 LYS1227 ALA1228 TYR1229 GLU1230 THR1231 GLY1232 LYS1233 GLY1234 ARG1235 VAL1236 VAL1237 VAL1238 ARG1239 SER1240 LYS1241 THR1242 GLU1243 ILE1244 GLU1245 LYS1246 LEU1247 LYS1248 GLY1249 GLY1250 LYS1251 GLU1252 GLN1253 ILE1254 VAL1255 ILE1256 THR1257 GLU1258 ILE1259 PRO1260 TYR1261 GLU1262 ILE1263 ASN1264 LYS1265 ALA1266 ASN1267 LEU1268 VAL1269 LYS1270 LYS1271 ILE1272 ASP1273 ASP1274 VAL1275 ARG1276 VAL1277 ASN1278 ASN1279 LYS1280 VAL1281 ALA1282 GLY1283 ILE1284 ALA1285 GLU1286 VAL1287 ARG1288 ASP1289 GLU1290 SER1291 ASP1292 ARG1293 ASP1294 GLY1295 LEU1296 ARG1297 ILE1298 ALA1299 ILE1300 GLU1301 LEU1302 LYS1303 LYS1304 ASP1305 ALA1306 ASN1307 THR1308 GLU1309 LEU1310 VAL1311 LEU1312 ASN1313 TYR1314 LEU1315 PHE1316 LYS1317 TYR1318 THR1319 ASP1320 LEU1321 GLN1322 ILE1323 ASN1324 TYR1325 ASN1326 PHE1327 ASN1328 MET1329 VAL1330 ALA1331 ILE1332 ASP1333 ASN1334 PHE1335 THR1336 PRO1337 ARG1338 GLN1339 VAL1340 GLY1341 ILE1342 VAL1343 PRO1344 ILE1345 LEU1346 SER1347 SER1348 TYR1349 ILE1350 ALA1351 HIS1352 ARG1353 ARG1354 GLU1355 VAL1356 ILE1357 LEU1358 ALA1359 ARG1360 SER1361 ARG1362 PHE1363 ASP1364 LYS1365 GLU1366 LYS1367 ALA1368 GLU1369 LYS1370 ARG1371 LEU1372 HIS1373 ILE1374 VAL1375 GLU1376 GLY1377 LEU1378 ILE1379 ARG1380 VAL1381 ILE1382 SER1383 ILE1384 LEU1385 ASP1386 GLU1387 VAL1388 ILE1389 ALA1390 LEU1391 ILE1392 ARG1393 ALA1394 SER1395 GLU1396 ASN1397 LYS1398 ALA1399 ASP1400 ALA1401 LYS1402 GLU1403 ASN1404 LEU1405 LYS1406 VAL1407 SER1408 TYR1409 ASP1410 PHE1411 THR1412 GLU1413 GLU1414 GLN1415 ALA1416 GLU1417 ALA1418 ILE1419 VAL1420 THR1421 LEU1422 GLN1423 LEU1424 TYR1425 ARG1426 LEU1427 THR1428 ASN1429 THR1430 ASP1431 VAL1432 VAL1433 VAL1434 LEU1435 GLN1436 GLU1437 GLU1438 GLU1439 ALA1440 GLU1441 LEU1442 ARG1443 GLU1444 LYS1445 ILE1446 ALA1447 MET1448 LEU1449 ALA1450 ALA1451 ILE1452 ILE1453 GLY1454 ASP1455 GLU1456 ARG1457 THR1458 MET1459 TYR1460 ASN1461 LEU1462 MET1463 LYS1464 LYS1465 GLU1466 LEU1467 ARG1468 GLU1469 VAL1470 LYS1471 LYS1472 LYS1473 PHE1474 ALA1475 THR1476 PRO1477 ARG1478 LEU1479 SER1480 SER1481 LEU1482 GLU1483 ASP1484
Unit 2 LYS415 LEU416 THR417 PRO418 ALA419 GLN420 SER421 LYS422 ASN423 PRO424 ALA425 LYS426 ASN427 GLU428 LEU429 TYR430 LEU431 VAL432 GLU433 GLY434 ASP435 SER436 ALA437 GLY438 GLY439 SER440 ALA441 LYS442 GLN443 GLY444 ARG445 ASP446 ARG447 LYS448 PHE449 GLN450 ALA451 ILE452 LEU453 PRO454 LEU455 ARG456 GLY457 LYS458 VAL459 ILE460 ASN461 THR462 ALA463 LYS464 ALA465 LYS466 MET467 ALA468 ASP469 ILE470 LEU471 LYS472 ASN473 GLU474 GLU475 ILE476 ASN477 THR478 MET479 ILE480 TYR481 THR482 ILE483 GLY484 ALA485 GLY486 VAL487 GLY488 ALA489 ASP490 PHE491 SER492 ILE493 GLU494 ASP495 ALA496 ASN497 TYR498 ASP499 LYS500 ILE501 ILE502 ILE503 MET504 THR505 ASP506 ALA507 ASP508 THR509 ASP510 GLY511 ALA512 HIS513 ILE514 GLN515 THR516 LEU517 LEU518 LEU519 THR520 PHE521 PHE522 TYR523 ARG524 TYR525 MET526 ARG527 PRO528 LEU529 VAL530 GLU531 ALA532 GLY533 HIS534 VAL535 TYR536 ILE537 ALA538 LEU539 PRO540 PRO541 LEU542 TYR543 LYS544 MET545 ALA556 TYR557 ALA558 TRP559 THR560 ASP561 GLY562 GLU563 LEU564 GLU565 GLU566 LEU567 ARG568 LYS569 GLN578 ARG579 TYR580 LYS581 GLY582 LEU583 GLY584 GLU585 MET586 ASN587 ALA588 ASP589 GLN590 LEU591 TRP592 GLU593 THR594 THR595 MET596 ASN597 PRO598 GLU599 THR600 ARG601 THR602 LEU603 ILE604 ARG605 VAL606 THR607 ILE608 GLU609 ASP610 LEU611 ALA612 ARG613 ALA614 GLU615 ARG616 ARG617 VAL618 ASN619 VAL620 LEU621 MET622 GLY623 ASP624 LYS625 VAL626 GLU627 PRO628 ARG629 ARG630 LYS631 TRP632 ILE633 GLU634 ASP635 ASN636 VAL637 LYS638 PHE639 THR640 ILE1004 GLN1005 ASN1006 MET1007 SER1008 LEU1009 GLU1010 ASP1011 ILE1012 MET1013 GLY1014 GLU1015 ARG1016 PHE1017 GLY1018 ARG1019 TYR1020 SER1021 LYS1022 TYR1023 ILE1024 ILE1025 GLN1026 ASP1027 ARG1028 ALA1029 LEU1030 PRO1031 ASP1032 ILE1033 ARG1034 ASP1035 GLY1036 LEU1037 LYS1038 PRO1039 VAL1040 GLN1041 ARG1042 ARG1043 ILE1044 LEU1045 TYR1046 SER1047 MET1048 ASN1049 LYS1050 ASP1051 SER1052 ASN1053 THR1054 PHE1055 ASP1056 LYS1057 SER1058 TYR1059 ARG1060 LYS1061 SER1062 ALA1063 LYS1064 SER1065 VAL1066 GLY1067 ASN1068 ILE1069 MET1070 GLY1071 ASN1072 PHE1073 HIS1074 PRO1075 HIS1076 GLY1077 ASP1078 SER1079 SER1080 ILE1081 TYR1082 ASP1083 ALA1084 MET1085 VAL1086 ARG1087 MET1088 SER1089 GLN1090 ASN1091 TRP1092 LYS1093 ASN1094 ARG1095 GLU1096 ILE1097 LEU1098 VAL1099 GLU1100 MET1101 HIS1102 GLY1103 ASN1104 ASN1105 GLY1106 SER1107 MET1108 ASP1109 GLY1110 ASP1111 PRO1112 PRO1113 ALA1114 ALA1115 MET1116 ARG1117 TYR1118 THR1119 GLU1120 ALA1121 ARG1122 LEU1123 SER1124 GLU1125 ILE1126 ALA1127 GLY1128 TYR1129 LEU1130 LEU1131 GLN1132 ASP1133 ILE1134 GLU1135 LYS1136 LYS1137 THR1138 VAL1139 PRO1140 PHE1141 ALA1142 TRP1143 ASN1144 PHE1145 ASP1146 ASP1147 THR1148 GLU1149 LYS1150 GLU1151 PRO1152 THR1153 VAL1154 LEU1155 PRO1156 ALA1157 ALA1158 PHE1159 PRO1160 ASN1161 LEU1162 LEU1163 VAL1164 ASN1165 GLY1166 SER1167 THR1168 GLY1169 ILE1170 SER1171 ALA1172 GLY1173 TYR1174 ALA1175 THR1176 ASP1177 ILE1178 PRO1179 PRO1180 HIS1181 ASN1182 LEU1183 ALA1184 GLU1185 VAL1186 ILE1187 ASP1188 ALA1189 ALA1190 VAL1191 TYR1192 MET1193 ILE1194 ASP1195 HIS1196 PRO1197 THR1198 ALA1199 LYS1200 ILE1201 ASP1202 LYS1203 LEU1204 MET1205 GLU1206 PHE1207 LEU1208 PRO1209 GLY1210 PRO1211 ASP1212 PHE1213 PRO1214 THR1215 GLY1216 ALA1217 ILE1218 ILE1219 GLN1220 GLY1221 ARG1222 ASP1223 GLU1224 ILE1225 LYS1226 LYS1227 ALA1228 TYR1229 GLU1230 THR1231 GLY1232 LYS1233 GLY1234 ARG1235 VAL1236 VAL1237 VAL1238 ARG1239 SER1240 LYS1241 THR1242 GLU1243 ILE1244 GLU1245 LYS1246 LEU1247 LYS1248 GLY1249 GLY1250 LYS1251 GLU1252 GLN1253 ILE1254 VAL1255 ILE1256 THR1257 GLU1258 ILE1259 PRO1260 TYR1261 GLU1262 ILE1263 ASN1264 LYS1265 ALA1266 ASN1267 LEU1268 VAL1269 LYS1270 LYS1271 ILE1272 ASP1273 ASP1274 VAL1275 ARG1276 VAL1277 ASN1278 ASN1279 LYS1280 VAL1281 ALA1282 GLY1283 ILE1284 ALA1285 GLU1286 VAL1287 ARG1288 ASP1289 GLU1290 SER1291 ASP1292 ARG1293 ASP1294 GLY1295 LEU1296 ARG1297 ILE1298 ALA1299 ILE1300 GLU1301 LEU1302 LYS1303 LYS1304 ASP1305 ALA1306 ASN1307 THR1308 GLU1309 LEU1310 VAL1311 LEU1312 ASN1313 TYR1314 LEU1315 PHE1316 LYS1317 TYR1318 THR1319 ASP1320 LEU1321 GLN1322 ILE1323 ASN1324 TYR1325 ASN1326 PHE1327 ASN1328 MET1329 VAL1330 ALA1331 ILE1332 ASP1333 ASN1334 PHE1335 THR1336 PRO1337 ARG1338 GLN1339 VAL1340 GLY1341 ILE1342 VAL1343 PRO1344 ILE1345 LEU1346 SER1347 SER1348 TYR1349 ILE1350 ALA1351 HIS1352 ARG1353 ARG1354 GLU1355 VAL1356 ILE1357 LEU1358 ALA1359 ARG1360 SER1361 ARG1362 PHE1363 ASP1364 LYS1365 GLU1366 LYS1367 ALA1368 GLU1369 LYS1370 ARG1371 LEU1372 HIS1373 ILE1374 VAL1375 GLU1376 GLY1377 LEU1378 ILE1379 ARG1380 VAL1381 ILE1382 SER1383 ILE1384 LEU1385 ASP1386 GLU1387 VAL1388 ILE1389 ALA1390 LEU1391 ILE1392 ARG1393 ALA1394 SER1395 GLU1396 ASN1397 LYS1398 ALA1399 ASP1400 ALA1401 LYS1402 GLU1403 ASN1404 LEU1405 LYS1406 VAL1407 SER1408 TYR1409 ASP1410 PHE1411 THR1412 GLU1413 GLU1414 GLN1415 ALA1416 GLU1417 ALA1418 ILE1419 VAL1420 THR1421 LEU1422 GLN1423 LEU1424 TYR1425 ARG1426 LEU1427 THR1428 ASN1429 THR1430 ASP1431 VAL1432 VAL1433 VAL1434 LEU1435 GLN1436 GLU1437 GLU1438 GLU1439 ALA1440 GLU1441 LEU1442 ARG1443 GLU1444 LYS1445 ILE1446 ALA1447 MET1448 LEU1449 ALA1450 ALA1451 ILE1452 ILE1453 GLY1454 ASP1455 GLU1456 ARG1457 THR1458 MET1459 TYR1460 ASN1461 LEU1462 MET1463 LYS1464 LYS1465 GLU1466 LEU1467 ARG1468 GLU1469 VAL1470 LYS1471 LYS1472 LYS1473 PHE1474 ALA1475 THR1476 PRO1477 ARG1478 LEU1479 SER1480 SER1481 LEU1482 GLU1483 ASP1484
Other macromolecules
Unit 3 DC9 DA10 DT11 DG12 DA13 DA14 DT15
Unit 4 DA1 DG2 DT3 DC4 DA5 DT6 DT7 DC8 DA9 DT10 DG11
Unit 5 DC9 DG10 DT11 DG12 DC13 DA14 DT15
Unit 6 DG1 DA2 DC3 DT4 DA5 DT6 DG7 DC8 DA9 DC10 DG11
Ligands
Unit 7 MG1501 MG1502
Unit 8 MG1501 MG1502
Unit 9 MFX101
Unit 10 MFX101
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany