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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF TLR13-SSRNA13 COMPLEX
Keywords IMMUNE RECEPTOR, TOLL-LIKE RECEPTOR, SSRNA, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4Z0C     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   TOLL-LIKE RECEPTOR 13  A 709 5724 0
2  Protein   TOLL-LIKE RECEPTOR 13  D 709 5730 0
3  RNA    B 13 279 0
4  RNA    C 13 279 0
5  Ligand    E 2 0 28
6  Ligand    F 2 0 28
7  Ligand    G 2 0 28
8  Ligand    H 2 0 28
9  Ligand    I 2 0 28
10  Ligand    J 2 0 28
11  Ligand   TOLL-LIKE RECEPTOR 13  A 9 0 126
12  Ligand   TOLL-LIKE RECEPTOR 13  D 11 0 154
13 Water     361 0 361
total       1837 12012 809
Proteins
Unit 1 TYR69 GLY70 PHE71 ASN72 LYS73 CYS74 THR75 GLN76 TYR77 GLU78 PHE79 ASP80 ILE81 HIS82 HIS83 VAL84 LEU85 CYS86 ILE87 ARG88 LYS89 LYS90 ILE91 THR92 ASN93 LEU94 THR95 GLU96 ALA97 ILE98 SER99 ASP100 ILE101 PRO102 ARG103 TYR104 THR105 THR106 HIS107 LEU108 ASN109 LEU110 THR111 HIS112 ASN113 GLU114 ILE115 GLN116 VAL117 LEU118 PRO119 PRO120 TRP121 SER122 PHE123 THR124 ASN125 LEU126 SER127 ALA128 LEU129 VAL130 ASP131 LEU132 ARG133 LEU134 GLU135 TRP136 ASN137 SER138 ILE139 TRP140 LYS141 ILE142 ASP143 GLU144 GLY145 ALA146 PHE147 ARG148 GLY149 LEU150 GLU151 ASN152 LEU153 THR154 LEU155 LEU156 ASN157 LEU158 VAL159 GLU160 ASN161 LYS162 ILE163 GLN164 SER165 VAL166 ASN167 ASN168 SER169 PHE170 GLU171 GLY172 LEU173 SER174 SER175 LEU176 LYS177 THR178 LEU179 LEU180 LEU181 SER182 HIS183 ASN184 GLN185 ILE186 THR187 HIS188 ILE189 HIS190 LYS191 ASP192 ALA193 PHE194 THR195 PRO196 LEU197 ILE198 LYS199 LEU200 LYS201 TYR202 LEU203 SER204 LEU205 SER206 ARG207 ASN208 ASN209 ILE210 SER211 ASP212 PHE213 SER214 GLY215 ILE216 LEU217 GLU218 ALA219 VAL220 GLN221 HIS222 LEU223 PRO224 CYS225 LEU226 GLU227 ARG228 LEU229 ASP230 LEU231 THR232 ASN233 ASN234 SER235 ILE236 MET237 TYR238 LEU239 ASP240 HIS241 SER242 PRO243 ARG244 SER245 LEU246 VAL247 SER248 LEU249 THR250 HIS251 LEU252 SER253 PHE254 GLU255 GLY256 ASN257 LYS258 LEU259 ARG260 GLU261 LEU262 ASN263 PHE264 SER265 ALA266 LEU267 SER268 LEU269 PRO270 ASN271 LEU272 THR273 ASN274 LEU275 SER276 ALA277 SER278 ARG279 ASN280 GLY281 ASN282 LYS283 VAL284 ILE285 GLN286 ASN287 VAL288 TYR289 LEU290 LYS291 THR292 LEU293 PRO294 GLN295 LEU296 LYS297 SER298 LEU299 ASN300 LEU301 SER302 GLY303 THR304 VAL305 ILE306 LYS307 LEU308 GLU309 ASN310 LEU311 SER312 ALA313 LYS314 HIS315 LEU316 GLN317 ASN318 LEU319 ARG320 ALA321 MET322 ASP323 LEU324 SER325 ASN326 TRP327 GLU328 LEU329 ARG330 HIS331 GLY332 HIS333 LEU334 ASP335 MET336 LYS337 THR338 VAL339 CYS340 HIS341 LEU342 LEU343 GLY344 ASN345 LEU346 PRO347 LYS348 LEU349 GLU350 THR351 LEU352 VAL353 PHE354 GLN355 LYS356 ASN357 VAL358 THR359 ASN360 ALA361 GLU362 GLY363 ILE364 LYS365 GLN366 LEU367 ALA368 LYS369 CYS370 THR371 ARG372 LEU373 LEU374 PHE375 LEU376 ASP377 LEU378 GLY379 GLN380 ASN381 SER382 ASP383 LEU384 ILE385 TYR386 LEU387 ASN388 ASP389 SER390 GLU391 PHE392 ASN393 ALA394 LEU395 PRO396 SER397 LEU398 GLN399 LYS400 LEU401 ASN402 LEU403 ASN404 LYS405 CYS406 GLN407 LEU408 SER409 PHE410 ILE411 ASN412 ASN413 ARG414 THR415 TRP416 SER417 SER418 LEU419 GLN420 ASN421 LEU422 THR423 SER424 LEU425 ASP426 LEU427 SER428 HIS429 ASN430 LYS431 PHE432 LYS433 SER434 PHE435 PRO436 ASP437 PHE438 ALA439 PHE440 SER441 PRO442 LEU443 LYS444 HIS445 LEU446 GLU447 PHE448 LEU449 SER450 LEU451 SER452 ARG453 ASN454 PRO455 ILE456 THR457 GLU458 LEU459 ASN460 ASN461 LEU462 ALA463 PHE464 SER465 GLY466 LEU467 PHE468 ALA469 LEU470 LYS471 GLU472 LEU473 ASN474 LEU475 ALA476 ALA477 CYS478 TRP479 ILE480 VAL481 THR482 ILE483 ASP484 ARG485 TYR486 SER487 PHE488 THR489 GLN490 PHE491 PRO492 ASN493 LEU494 GLU495 VAL496 LEU497 ASP498 LEU499 GLY500 ASP501 ASN502 ASN503 ILE504 ARG505 THR506 LEU507 ASN508 HIS509 GLY510 THR511 PHE512 ARG513 PRO514 LEU515 LYS516 LYS517 LEU518 GLN519 SER520 LEU521 ILE522 LEU523 SER524 HIS525 ASN526 CYS527 LEU528 LYS529 ILE530 LEU531 GLU532 PRO533 ASN534 SER535 PHE536 SER537 GLY538 LEU539 THR540 ASN541 LEU542 ARG543 SER544 LEU545 ASP546 LEU547 MET548 TYR549 ASN550 SER551 LEU552 SER553 TYR554 PHE555 HIS556 GLU557 HIS558 LEU559 PHE560 SER561 GLY562 LEU563 GLU564 LYS565 LEU566 LEU567 ILE568 LEU569 LYS570 LEU571 GLY572 PHE573 ASN574 LYS575 ILE576 THR577 TYR578 GLU579 THR580 THR581 ARG582 THR583 LEU584 GLN585 TYR586 PRO587 PRO588 PHE589 ILE590 LYS591 LEU592 LYS593 SER594 LEU595 LYS596 GLN597 LEU598 ASN599 LEU600 GLU601 GLY602 GLN603 ARG604 HIS605 GLY606 ILE607 GLN608 VAL609 VAL610 PRO611 SER612 ASN613 PHE614 PHE615 GLN616 GLY617 LEU618 GLY619 SER620 LEU621 GLN622 GLU623 LEU624 LEU625 LEU626 GLY627 LYS628 ASN629 PRO630 SER631 VAL632 PHE633 LEU634 ASP635 HIS636 HIS637 GLN638 PHE639 ASP640 PRO641 LEU642 ILE643 ASN644 LEU645 THR646 LYS647 LEU648 ASP649 ILE650 SER651 GLY652 THR653 LYS654 ASP655 GLY656 ASP657 ARG658 SER659 LEU660 TYR661 LEU662 ASN663 ALA664 SER665 LEU666 PHE667 GLN668 ASN669 LEU670 LYS671 ARG672 LEU673 LYS674 ILE675 LEU676 ARG677 LEU678 GLU679 ASN680 ASN681 ASN682 LEU683 GLU684 SER685 LEU686 VAL687 PRO688 ASP689 MET690 PHE691 SER692 SER693 LEU694 GLN695 SER696 LEU697 GLN698 VAL699 PHE700 SER701 LEU702 ARG703 PHE704 ASN705 ASN706 LEU707 LYS708 VAL709 ILE710 ASN711 GLN712 SER713 HIS714 LEU715 LYS716 ASN717 LEU718 LYS719 SER720 LEU721 MET722 PHE723 PHE724 ASP725 VAL726 TYR727 GLY728 ASN729 LYS730 LEU731 GLN732 CYS733 THR734 CYS735 ASP736 ASN737 LEU738 TRP739 PHE740 LYS741 ASN742 TRP743 SER744 MET745 ASN746 THR747 GLU748 GLU749 VAL750 HIS751 ILE752 PRO753 PHE754 LEU755 ARG756 SER757 TYR758 PRO759 CYS760 GLN761 GLN762 PRO763 GLY764 SER765 GLN766 SER767 LEU768 LEU769 ILE770 ASP771 PHE772 ASP773 ASP774 ALA775 MET776 CYS777
Unit 2 TYR69 GLY70 PHE71 ASN72 LYS73 CYS74 THR75 GLN76 TYR77 GLU78 PHE79 ASP80 ILE81 HIS82 HIS83 VAL84 LEU85 CYS86 ILE87 ARG88 LYS89 LYS90 ILE91 THR92 ASN93 LEU94 THR95 GLU96 ALA97 ILE98 SER99 ASP100 ILE101 PRO102 ARG103 TYR104 THR105 THR106 HIS107 LEU108 ASN109 LEU110 THR111 HIS112 ASN113 GLU114 ILE115 GLN116 VAL117 LEU118 PRO119 PRO120 TRP121 SER122 PHE123 THR124 ASN125 LEU126 SER127 ALA128 LEU129 VAL130 ASP131 LEU132 ARG133 LEU134 GLU135 TRP136 ASN137 SER138 ILE139 TRP140 LYS141 ILE142 ASP143 GLU144 GLY145 ALA146 PHE147 ARG148 GLY149 LEU150 GLU151 ASN152 LEU153 THR154 LEU155 LEU156 ASN157 LEU158 VAL159 GLU160 ASN161 LYS162 ILE163 GLN164 SER165 VAL166 ASN167 ASN168 SER169 PHE170 GLU171 GLY172 LEU173 SER174 SER175 LEU176 LYS177 THR178 LEU179 LEU180 LEU181 SER182 HIS183 ASN184 GLN185 ILE186 THR187 HIS188 ILE189 HIS190 LYS191 ASP192 ALA193 PHE194 THR195 PRO196 LEU197 ILE198 LYS199 LEU200 LYS201 TYR202 LEU203 SER204 LEU205 SER206 ARG207 ASN208 ASN209 ILE210 SER211 ASP212 PHE213 SER214 GLY215 ILE216 LEU217 GLU218 ALA219 VAL220 GLN221 HIS222 LEU223 PRO224 CYS225 LEU226 GLU227 ARG228 LEU229 ASP230 LEU231 THR232 ASN233 ASN234 SER235 ILE236 MET237 TYR238 LEU239 ASP240 HIS241 SER242 PRO243 ARG244 SER245 LEU246 VAL247 SER248 LEU249 THR250 HIS251 LEU252 SER253 PHE254 GLU255 GLY256 ASN257 LYS258 LEU259 ARG260 GLU261 LEU262 ASN263 PHE264 SER265 ALA266 LEU267 SER268 LEU269 PRO270 ASN271 LEU272 THR273 ASN274 LEU275 SER276 ALA277 SER278 ARG279 ASN280 GLY281 ASN282 LYS283 VAL284 ILE285 GLN286 ASN287 VAL288 TYR289 LEU290 LYS291 THR292 LEU293 PRO294 GLN295 LEU296 LYS297 SER298 LEU299 ASN300 LEU301 SER302 GLY303 THR304 VAL305 ILE306 LYS307 LEU308 GLU309 ASN310 LEU311 SER312 ALA313 LYS314 HIS315 LEU316 GLN317 ASN318 LEU319 ARG320 ALA321 MET322 ASP323 LEU324 SER325 ASN326 TRP327 GLU328 LEU329 ARG330 HIS331 GLY332 HIS333 LEU334 ASP335 MET336 LYS337 THR338 VAL339 CYS340 HIS341 LEU342 LEU343 GLY344 ASN345 LEU346 PRO347 LYS348 LEU349 GLU350 THR351 LEU352 VAL353 PHE354 GLN355 LYS356 ASN357 VAL358 THR359 ASN360 ALA361 GLU362 GLY363 ILE364 LYS365 GLN366 LEU367 ALA368 LYS369 CYS370 THR371 ARG372 LEU373 LEU374 PHE375 LEU376 ASP377 LEU378 GLY379 GLN380 ASN381 SER382 ASP383 LEU384 ILE385 TYR386 LEU387 ASN388 ASP389 SER390 GLU391 PHE392 ASN393 ALA394 LEU395 PRO396 SER397 LEU398 GLN399 LYS400 LEU401 ASN402 LEU403 ASN404 LYS405 CYS406 GLN407 LEU408 SER409 PHE410 ILE411 ASN412 ASN413 ARG414 THR415 TRP416 SER417 SER418 LEU419 GLN420 ASN421 LEU422 THR423 SER424 LEU425 ASP426 LEU427 SER428 HIS429 ASN430 LYS431 PHE432 LYS433 SER434 PHE435 PRO436 ASP437 PHE438 ALA439 PHE440 SER441 PRO442 LEU443 LYS444 HIS445 LEU446 GLU447 PHE448 LEU449 SER450 LEU451 SER452 ARG453 ASN454 PRO455 ILE456 THR457 GLU458 LEU459 ASN460 ASN461 LEU462 ALA463 PHE464 SER465 GLY466 LEU467 PHE468 ALA469 LEU470 LYS471 GLU472 LEU473 ASN474 LEU475 ALA476 ALA477 CYS478 TRP479 ILE480 VAL481 THR482 ILE483 ASP484 ARG485 TYR486 SER487 PHE488 THR489 GLN490 PHE491 PRO492 ASN493 LEU494 GLU495 VAL496 LEU497 ASP498 LEU499 GLY500 ASP501 ASN502 ASN503 ILE504 ARG505 THR506 LEU507 ASN508 HIS509 GLY510 THR511 PHE512 ARG513 PRO514 LEU515 LYS516 LYS517 LEU518 GLN519 SER520 LEU521 ILE522 LEU523 SER524 HIS525 ASN526 CYS527 LEU528 LYS529 ILE530 LEU531 GLU532 PRO533 ASN534 SER535 PHE536 SER537 GLY538 LEU539 THR540 ASN541 LEU542 ARG543 SER544 LEU545 ASP546 LEU547 MET548 TYR549 ASN550 SER551 LEU552 SER553 TYR554 PHE555 HIS556 GLU557 HIS558 LEU559 PHE560 SER561 GLY562 LEU563 GLU564 LYS565 LEU566 LEU567 ILE568 LEU569 LYS570 LEU571 GLY572 PHE573 ASN574 LYS575 ILE576 THR577 TYR578 GLU579 THR580 THR581 ARG582 THR583 LEU584 GLN585 TYR586 PRO587 PRO588 PHE589 ILE590 LYS591 LEU592 LYS593 SER594 LEU595 LYS596 GLN597 LEU598 ASN599 LEU600 GLU601 GLY602 GLN603 ARG604 HIS605 GLY606 ILE607 GLN608 VAL609 VAL610 PRO611 SER612 ASN613 PHE614 PHE615 GLN616 GLY617 LEU618 GLY619 SER620 LEU621 GLN622 GLU623 LEU624 LEU625 LEU626 GLY627 LYS628 ASN629 PRO630 SER631 VAL632 PHE633 LEU634 ASP635 HIS636 HIS637 GLN638 PHE639 ASP640 PRO641 LEU642 ILE643 ASN644 LEU645 THR646 LYS647 LEU648 ASP649 ILE650 SER651 GLY652 THR653 LYS654 ASP655 GLY656 ASP657 ARG658 SER659 LEU660 TYR661 LEU662 ASN663 ALA664 SER665 LEU666 PHE667 GLN668 ASN669 LEU670 LYS671 ARG672 LEU673 LYS674 ILE675 LEU676 ARG677 LEU678 GLU679 ASN680 ASN681 ASN682 LEU683 GLU684 SER685 LEU686 VAL687 PRO688 ASP689 MET690 PHE691 SER692 SER693 LEU694 GLN695 SER696 LEU697 GLN698 VAL699 PHE700 SER701 LEU702 ARG703 PHE704 ASN705 ASN706 LEU707 LYS708 VAL709 ILE710 ASN711 GLN712 SER713 HIS714 LEU715 LYS716 ASN717 LEU718 LYS719 SER720 LEU721 MET722 PHE723 PHE724 ASP725 VAL726 TYR727 GLY728 ASN729 LYS730 LEU731 GLN732 CYS733 THR734 CYS735 ASP736 ASN737 LEU738 TRP739 PHE740 LYS741 ASN742 TRP743 SER744 MET745 ASN746 THR747 GLU748 GLU749 VAL750 HIS751 ILE752 PRO753 PHE754 LEU755 ARG756 SER757 TYR758 PRO759 CYS760 GLN761 GLN762 PRO763 GLY764 SER765 GLN766 SER767 LEU768 LEU769 ILE770 ASP771 PHE772 ASP773 ASP774 ALA775 MET776 CYS777
Nucleic acids
Unit 3 A1 C2 G3 G4 A5 A6 A7 G8 A9 C10 C11 C12 C13
Unit 4 A1 C2 G3 G4 A5 A6 A7 G8 A9 C10 C11 C12 C13
Ligands
Unit 5 NAG1 NAG2
Unit 6 NAG1 NAG2
Unit 7 NAG1 NAG2
Unit 8 NAG1 NAG2
Unit 9 NAG1 NAG2
Unit 10 NAG1 NAG2
Unit 11 NAG903 NAG904 NAG905 NAG906 NAG909 NAG910 NAG911 NAG914 NAG915
Unit 12 NAG903 NAG904 NAG905 NAG908 NAG909 NAG912 NAG913 NAG914 NAG915 NAG916 NAG917
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany