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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF STREPTOCOCCUS PNEUMONIAE NANC, IN COMPL SIALYLLACTOSE
Keywords SIALIDASE, NEURAMINIDASE, BETA-PROPELLER, CBM40, HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4YZ5     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PUTATIVE NEURAMINIDASE  A 656 5198 0
2  Protein   PUTATIVE NEURAMINIDASE  B 654 5180 0
3  Ligand    C 3 0 32
4  Ligand    D 3 0 32
5  Ligand   PUTATIVE NEURAMINIDASE  A 6 0 45
6  Ligand   PUTATIVE NEURAMINIDASE  B 6 0 45
7 Water     721 0 721
total       2049 10378 875
Proteins
Unit 1 THR84 PRO85 VAL86 LEU87 GLU88 LYS89 ASN90 ASN91 VAL92 THR93 LEU94 THR95 GLY96 GLY97 GLY98 GLU99 ASN100 VAL101 THR102 LYS103 GLU104 LEU105 LYS106 ASP107 LYS108 PHE109 THR110 SER111 GLY112 ASP113 PHE114 THR115 VAL116 VAL117 ILE118 LYS119 TYR120 ASN121 GLN122 SER123 SER124 GLU125 LYS126 GLY127 LEU128 GLN129 ALA130 LEU131 PHE132 GLY133 ILE134 SER135 ASN136 SER137 LYS138 PRO139 GLY140 GLN141 GLN142 ASN143 SER144 TYR145 VAL146 ASP147 VAL148 PHE149 LEU150 ARG151 ASP152 ASN153 GLY154 GLU155 LEU156 GLY157 MET158 GLU159 ALA160 ARG161 ASP162 THR163 SER164 SER165 ASN166 LYS167 ASN168 ASN169 LEU170 VAL171 SER172 ARG173 PRO174 ALA175 SER176 VAL177 TRP178 GLY179 LYS180 TYR181 LYS182 GLN183 GLU184 ALA185 VAL186 THR187 ASN188 THR189 VAL190 ALA191 VAL192 VAL193 ALA194 ASP195 SER196 VAL197 LYS198 LYS199 THR200 TYR201 SER202 LEU203 TYR204 ALA205 ASN206 GLY207 THR208 LYS209 VAL210 VAL211 GLU212 LYS213 LYS214 VAL215 ASP216 ASN217 PHE218 LEU219 ASN220 ILE221 LYS222 ASP223 ILE224 LYS225 GLY226 ILE227 ASP228 TYR229 TYR230 MET231 LEU232 GLY233 GLY234 VAL235 LYS236 ARG237 ALA238 GLY239 LYS240 THR241 ALA242 PHE243 GLY244 PHE245 ASN246 GLY247 THR248 LEU249 GLU250 ASN251 ILE252 LYS253 PHE254 PHE255 ASN256 SER257 ALA258 LEU259 ASP260 GLU261 GLU262 THR263 VAL264 LYS265 LYS266 MET267 THR268 THR269 ASN270 ALA271 VAL272 THR273 GLY274 HIS275 LEU276 ILE277 TYR278 THR279 ALA280 ASN281 ASP282 THR283 THR284 GLY285 SER286 ASN287 TYR288 PHE289 ARG290 ILE291 PRO292 VAL293 LEU294 TYR295 THR296 PHE297 SER298 ASN299 GLY300 ARG301 VAL302 PHE303 SER304 SER305 ILE306 ASP307 ALA308 ARG309 TYR310 GLY311 GLY312 THR313 HIS314 ASP315 PHE316 LEU317 ASN318 LYS319 ILE320 ASN321 ILE322 ALA323 THR324 SER325 TYR326 SER327 ASP328 ASP329 ASN330 GLY331 LYS332 THR333 TRP334 THR335 LYS336 PRO337 LYS338 LEU339 THR340 LEU341 ALA342 PHE343 ASP344 ASP345 PHE346 ALA347 PRO348 VAL349 PRO350 LEU351 GLU352 TRP353 PRO354 ARG355 GLU356 VAL357 GLY358 GLY359 ARG360 ASP361 LEU362 GLN363 ILE364 SER365 GLY366 GLY367 ALA368 THR369 TYR370 ILE371 ASP372 SER373 VAL374 ILE375 VAL376 GLU377 LYS378 LYS379 ASN380 LYS381 GLN382 VAL383 LEU384 MET385 PHE386 ALA387 ASP388 VAL389 MET390 PRO391 ALA392 GLY393 VAL394 SER395 PHE396 ARG397 GLU398 ALA399 THR400 ARG401 LYS402 ASP403 SER404 GLY405 TYR406 LYS407 GLN408 ILE409 ASP410 GLY411 ASN412 TYR413 TYR414 LEU415 LYS416 LEU417 ARG418 LYS419 GLN420 GLY421 ASP422 THR423 ASP424 TYR425 ASN426 TYR427 THR428 ILE429 ARG430 GLU431 ASN432 GLY433 THR434 VAL435 TYR436 ASP437 ASP438 ARG439 THR440 ASN441 ARG442 PRO443 THR444 GLU445 PHE446 SER447 VAL448 ASP449 LYS450 ASN451 PHE452 GLY453 ILE454 LYS455 GLN456 ASN457 GLY458 ASN459 TYR460 LEU461 THR462 VAL463 GLU464 GLN465 TYR466 SER467 VAL468 SER469 PHE470 GLU471 ASN473 LYS474 LYS475 THR476 GLU477 TYR478 ARG479 ASN480 GLY481 THR482 LYS483 VAL484 HIS485 MET486 ASN487 ILE488 PHE489 TYR490 LYS491 ASP492 ALA493 LEU494 PHE495 LYS496 VAL497 VAL498 PRO499 THR500 ASN501 TYR502 ILE503 ALA504 TYR505 ILE506 SER507 SER508 ASN509 ASP510 HIS511 GLY512 GLU513 SER514 TRP515 SER516 ALA517 PRO518 THR519 LEU520 LEU521 PRO522 PRO523 ILE524 MET525 GLY526 LEU527 ASN528 ARG529 ASN530 ALA531 PRO532 TYR533 LEU534 GLY535 PRO536 GLY537 ARG538 GLY539 ILE540 ILE541 GLU542 SER543 SER544 THR545 GLY546 ARG547 ILE548 LEU549 ILE550 PRO551 SER552 TYR553 THR554 GLY555 LYS556 GLU557 SER558 ALA559 PHE560 ILE561 TYR562 SER563 ASP564 ASP565 ASN566 GLY567 ALA568 SER569 TRP570 LYS571 VAL572 LYS573 VAL574 VAL575 PRO576 LEU577 PRO578 SER579 SER580 TRP581 SER582 ALA583 GLU584 ALA585 GLN586 PHE587 VAL588 GLU589 LEU590 SER591 PRO592 GLY593 VAL594 ILE595 GLN596 ALA597 TYR598 MET599 ARG600 THR601 ASN602 ASN603 GLY604 LYS605 ILE606 ALA607 TYR608 LEU609 THR610 SER611 LYS612 ASP613 ALA614 GLY615 THR616 THR617 TRP618 SER619 ALA620 PRO621 GLU622 TYR623 LEU624 LYS625 PHE626 VAL627 SER628 ASN629 PRO630 SER631 TYR632 GLY633 THR634 GLN635 LEU636 SER637 ILE638 ILE639 ASN640 TYR641 SER642 GLN643 LEU644 ILE645 ASP646 GLY647 LYS648 LYS649 ALA650 VAL651 ILE652 LEU653 SER654 THR655 PRO656 ASN657 SER658 THR659 ASN660 GLY661 ARG662 LYS663 HIS664 GLY665 GLN666 ILE667 TRP668 ILE669 GLY670 LEU671 ILE672 ASN673 ASP674 ASP675 ASN676 THR677 ILE678 ASP679 TRP680 ARG681 TYR682 HIS683 HIS684 ASP685 VAL686 ASP687 TYR688 SER689 ASN690 TYR691 GLY692 TYR693 SER694 TYR695 SER696 THR697 LEU698 THR699 GLU700 LEU701 PRO702 ASN703 HIS704 GLU705 ILE706 GLY707 LEU708 MET709 PHE710 GLU711 LYS712 PHE713 ASP714 SER715 TRP716 SER717 ARG718 ASN719 GLU720 LEU721 HIS722 MET723 LYS724 ASN725 VAL726 VAL727 PRO728 TYR729 ILE730 THR731 PHE732 LYS733 ILE734 GLU735 ASP736 LEU737 LYS738 LYS739 ASN740
Unit 2 ASN83 THR84 PRO85 VAL86 LEU87 GLU88 LYS89 ASN90 ASN91 VAL92 THR93 LEU94 THR95 GLY96 GLY97 GLY98 GLU99 ASN100 VAL101 THR102 LYS103 GLU104 LEU105 LYS106 ASP107 LYS108 PHE109 THR110 SER111 GLY112 ASP113 PHE114 THR115 VAL116 VAL117 ILE118 LYS119 TYR120 ASN121 GLN122 SER123 SER124 GLU125 LYS126 GLY127 LEU128 GLN129 ALA130 LEU131 PHE132 GLY133 ILE134 SER135 ASN136 SER137 LYS138 PRO139 GLY140 GLN141 GLN142 ASN143 SER144 TYR145 VAL146 ASP147 VAL148 PHE149 LEU150 ARG151 ASP152 ASN153 GLY154 GLU155 LEU156 GLY157 MET158 GLU159 ALA160 ARG161 ASP162 THR163 SER164 SER165 ASN166 LYS167 ASN168 ASN169 LEU170 VAL171 SER172 ARG173 PRO174 ALA175 SER176 VAL177 TRP178 GLY179 LYS180 TYR181 LYS182 GLN183 GLU184 ALA185 VAL186 THR187 ASN188 THR189 VAL190 ALA191 VAL192 VAL193 ALA194 ASP195 SER196 VAL197 LYS198 LYS199 THR200 TYR201 SER202 LEU203 TYR204 ALA205 ASN206 GLY207 THR208 LYS209 VAL210 VAL211 GLU212 LYS213 LYS214 VAL215 ASP216 ASN217 PHE218 LEU219 ASN220 ILE221 LYS222 ASP223 ILE224 LYS225 GLY226 ILE227 ASP228 TYR229 TYR230 MET231 LEU232 GLY233 GLY234 VAL235 LYS236 ARG237 ALA238 GLY239 LYS240 THR241 ALA242 PHE243 GLY244 PHE245 ASN246 GLY247 THR248 LEU249 GLU250 ASN251 ILE252 LYS253 PHE254 PHE255 ASN256 SER257 ALA258 LEU259 ASP260 GLU261 GLU262 THR263 VAL264 LYS265 LYS266 MET267 THR268 THR269 ASN270 ALA271 VAL272 THR273 GLY274 HIS275 LEU276 ILE277 TYR278 THR279 ALA280 ASN281 ASP282 THR283 THR284 GLY285 SER286 ASN287 TYR288 PHE289 ARG290 ILE291 PRO292 VAL293 LEU294 TYR295 THR296 PHE297 SER298 ASN299 GLY300 ARG301 VAL302 PHE303 SER304 SER305 ILE306 ASP307 ALA308 ARG309 TYR310 GLY311 GLY312 THR313 HIS314 ASP315 PHE316 LEU317 ASN318 LYS319 ILE320 ASN321 ILE322 ALA323 THR324 SER325 TYR326 SER327 ASP328 ASP329 ASN330 GLY331 LYS332 THR333 TRP334 THR335 LYS336 PRO337 LYS338 LEU339 THR340 LEU341 ALA342 PHE343 ASP344 ASP345 PHE346 ALA347 PRO348 VAL349 PRO350 LEU351 GLU352 TRP353 PRO354 ARG355 GLU356 VAL357 GLY358 GLY359 ARG360 ASP361 LEU362 GLN363 ILE364 SER365 GLY366 GLY367 ALA368 THR369 TYR370 ILE371 ASP372 SER373 VAL374 ILE375 VAL376 GLU377 LYS378 LYS379 ASN380 LYS381 GLN382 VAL383 LEU384 MET385 PHE386 ALA387 ASP388 VAL389 MET390 PRO391 ALA392 GLY393 VAL394 SER395 PHE396 ARG397 GLU398 ALA399 THR400 ARG401 LYS402 ASP403 SER404 GLY405 TYR406 LYS407 GLN408 ILE409 ASP410 GLY411 ASN412 TYR413 TYR414 LEU415 LYS416 LEU417 ARG418 LYS419 GLN420 GLY421 ASP422 THR423 ASP424 TYR425 ASN426 TYR427 THR428 ILE429 ARG430 GLU431 ASN432 GLY433 THR434 VAL435 TYR436 ASP437 ASP438 ARG439 THR440 ASN441 ARG442 PRO443 THR444 GLU445 PHE446 SER447 VAL448 ASP449 LYS450 ASN451 PHE452 GLY453 ILE454 LYS455 GLN456 ASN457 GLY458 ASN459 TYR460 LEU461 THR462 VAL463 GLU464 GLN465 TYR466 SER467 VAL468 SER469 PHE470 LYS475 THR476 GLU477 TYR478 ARG479 ASN480 GLY481 THR482 LYS483 VAL484 HIS485 MET486 ASN487 ILE488 PHE489 TYR490 LYS491 ASP492 ALA493 LEU494 PHE495 LYS496 VAL497 VAL498 PRO499 THR500 ASN501 TYR502 ILE503 ALA504 TYR505 ILE506 SER507 SER508 ASN509 ASP510 HIS511 GLY512 GLU513 SER514 TRP515 SER516 ALA517 PRO518 THR519 LEU520 LEU521 PRO522 PRO523 ILE524 MET525 GLY526 LEU527 ASN528 ARG529 ASN530 ALA531 PRO532 TYR533 LEU534 GLY535 PRO536 GLY537 ARG538 GLY539 ILE540 ILE541 GLU542 SER543 SER544 THR545 GLY546 ARG547 ILE548 LEU549 ILE550 PRO551 SER552 TYR553 THR554 GLY555 LYS556 GLU557 SER558 ALA559 PHE560 ILE561 TYR562 SER563 ASP564 ASP565 ASN566 GLY567 ALA568 SER569 TRP570 LYS571 VAL572 LYS573 VAL574 VAL575 PRO576 LEU577 PRO578 SER579 SER580 TRP581 SER582 ALA583 GLU584 ALA585 GLN586 PHE587 VAL588 GLU589 LEU590 SER591 PRO592 GLY593 VAL594 ILE595 GLN596 ALA597 TYR598 MET599 ARG600 THR601 ASN602 ASN603 GLY604 LYS605 ILE606 ALA607 TYR608 LEU609 THR610 SER611 LYS612 ASP613 ALA614 GLY615 THR616 THR617 TRP618 SER619 ALA620 PRO621 GLU622 TYR623 LEU624 LYS625 PHE626 VAL627 SER628 ASN629 PRO630 SER631 TYR632 GLY633 THR634 GLN635 LEU636 SER637 ILE638 ILE639 ASN640 TYR641 SER642 GLN643 LEU644 ILE645 ASP646 GLY647 LYS648 LYS649 ALA650 VAL651 ILE652 LEU653 SER654 THR655 PRO656 ASN657 SER658 THR659 ASN660 GLY661 ARG662 LYS663 HIS664 GLY665 GLN666 ILE667 TRP668 ILE669 GLY670 LEU671 ILE672 ASN673 ASP674 ASP675 ASN676 THR677 ILE678 ASP679 TRP680 ARG681 TYR682 HIS683 HIS684 ASP685 VAL686 ASP687 TYR688 SER689 ASN690 TYR691 GLY692 TYR693 SER694 TYR695 SER696 THR697 LEU698 THR699 GLU700 LEU701 PRO702 ASN703 HIS704 GLU705 ILE706 GLY707 LEU708 MET709 PHE710 GLU711 LYS712 PHE713 ASP714 SER715 TRP716 SER717 ARG718 ASN719 GLU720 LEU721 HIS722 MET723 LYS724 ASN725 VAL726 VAL727 PRO728 TYR729 ILE730 THR731 PHE732 LYS733 ILE734 GLU735 ASP736 LEU737 LYS738 LYS739 ASN740
Ligands
Unit 3 GLC1 GAL2 SIA3
Unit 4 GLC1 GAL2 SIA3
Unit 5 DAN1002 SO41003 SO41004 SO41005 SO41006 SO41007
Unit 6 DAN802 SO4803 SO4804 SO4805 SO4806 SO4807
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany