4YTB - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF PORPHYROMONAS GINGIVALIS PEPTIDYLARGINI DEIMINASE (PPAD) IN COMPLEX WITH DIPEPTIDE ASP-GLN.
• Keywords: PEPTIDYLARGININE DEIMINASE, CITRULLINATION, HYDROLASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4YTB	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PEPTIDYLARGININE DEIMINASE	A	422	3330	0
2	Protein	PEPTIDYLARGININE DEIMINASE	A	14	0	71
3	Water			688	0	688
total				1124	3330	759

Proteins

Unit 1

ALA 44 PHE 45 GLN 46 GLU 47 THR 48 ASN 49 PRO 50 PRO 51 ALA 52 GLY 53 PRO 54 VAL 55 ARG 56 ALA 57 ILE 58 ALA 59 GLU 60 TYR 61 GLU 62 ARG 63 SER 64 ALA 65 ALA 66 VAL 67 LEU 68 VAL 69 ARG 70 TYR 71 PRO 72 PHE 73 GLY 74 ILE 75 PRO 76 MET 77 GLU 78 LEU 79 ILE 80 LYS 81 GLU 82 LEU 83 ALA 84 LYS 85 ASN 86 ASP 87 LYS 88 VAL 89 ILE 90 THR 91 ILE 92 VAL 93 ALA 94 SER 95 GLU 96 SER 97 GLN 98 LYS 99 ASN 100 THR 101 VAL 102 ILE 103 THR 104 GLN 105 TYR 106 THR 107 GLN 108 SER 109 GLY 110 VAL 111 ASN 112 LEU 113 SER 114 ASN 115 CYS 116 ASP 117 PHE 118 ILE 119 ILE 120 ALA 121 LYS 122 THR 123 ASP 124 SER 125 TYR 126 TRP 127 THR 128 ARG 129 ASP 130 TYR 131 THR 132 GLY 133 TRP 134 PHE 135 ALA 136 MET 137 TYR 138 ASP 139 THR 140 ASN 141 LYS 142 VAL 143 GLY 144 LEU 145 VAL 146 ASP 147 PHE 148 ILE 149 TYR 150 ASN 151 ARG 152 PRO 153 ARG 154 PRO 155 ASN 156 ASP 157 ASP 158 GLU 159 PHE 160 PRO 161 LYS 162 TYR 163 GLU 164 ALA 165 GLN 166 TYR 167 LEU 168 GLY 169 ILE 170 GLU 171 MET 172 PHE 173 GLY 174 MET 175 LYS 176 LEU 177 LYS 178 GLN 179 THR 180 GLY 181 GLY 182 ASN 183 TYR 184 MET 185 THR 186 ASP 187 GLY 188 TYR 189 GLY 190 SER 191 ALA 192 VAL 193 GLN 194 SER 195 HIS 196 ILE 197 ALA 198 TYR 199 THR 200 GLU 201 ASN 202 SER 203 SER 204 LEU 205 SER 206 GLN 207 ALA 208 GLN 209 VAL 210 ASN 211 GLN 212 LYS 213 MET 214 LYS 215 ASP 216 TYR 217 LEU 218 GLY 219 ILE 220 THR 221 HIS 222 HIS 223 ASP 224 VAL 225 VAL 226 GLN 227 ASP 228 PRO 229 ASN 230 GLY 231 GLU 232 TYR 233 ILE 234 ASN 235 HIS 236 VAL 237 ASP 238 CYS 239 TRP 240 GLY 241 LYS 242 TYR 243 LEU 244 ALA 245 PRO 246 ASN 247 LYS 248 ILE 249 LEU 250 ILE 251 ARG 252 LYS 253 VAL 254 PRO 255 ASP 256 ASN 257 HIS 258 PRO 259 GLN 260 HIS 261 GLN 262 ALA 263 LEU 264 GLU 265 ASP 266 MET 267 ALA 268 ALA 269 TYR 270 PHE 271 ALA 272 ALA 273 GLN 274 THR 275 CYS 276 ALA 277 TRP 278 GLY 279 THR 280 LYS 281 TYR 282 GLU 283 VAL 284 TYR 285 ARG 286 ALA 287 LEU 288 ALA 289 THR 290 ASN 291 GLU 292 GLN 293 PRO 294 TYR 295 THR 296 ASN 297 SER 298 LEU 299 ILE 300 LEU 301 ASN 302 ASN 303 ARG 304 VAL 305 PHE 306 VAL 307 PRO 308 VAL 309 ASN 310 GLY 311 PRO 312 ALA 313 SER 314 VAL 315 ASP 316 ASN 317 ASP 318 ALA 319 LEU 320 ASN 321 VAL 322 TYR 323 LYS 324 THR 325 ALA 326 MET 327 PRO 328 GLY 329 TYR 330 GLU 331 ILE 332 ILE 333 GLY 334 VAL 335 LYS 336 GLY 337 ALA 338 SER 339 GLY 340 THR 341 PRO 342 TRP 343 LEU 344 GLY 345 THR 346 ASP 347 ALA 348 LEU 349 HIS 350 CYS 351 ARG 352 THR 353 HIS 354 GLU 355 VAL 356 ALA 357 ASP 358 LYS 359 GLY 360 TYR 361 LEU 362 TYR 363 ILE 364 LYS 365 HIS 366 TYR 367 PRO 368 ILE 369 LEU 370 GLY 371 GLU 372 GLN 373 ALA 374 GLY 375 PRO 376 ASP 377 TYR 378 LYS 379 ILE 380 GLU 381 ALA 382 ASP 383 VAL 384 VAL 385 SER 386 CYS 387 ALA 388 ASN 389 ALA 390 THR 391 ILE 392 SER 393 PRO 394 VAL 395 GLN 396 CYS 397 TYR 398 TYR 399 ARG 400 ILE 401 ASN 402 GLY 403 SER 404 GLY 405 SER 406 PHE 407 LYS 408 ALA 409 ALA 410 ASP 411 MET 412 THR 413 MET 414 GLU 415 SER 416 THR 417 GLY 418 HIS 419 TYR 420 THR 421 TYR 422 SER 423 PHE 424 THR 425 GLY 426 LEU 427 ASN 428 LYS 429 ASN 430 ASP 431 LYS 432 VAL 433 GLU 434 TYR 435 TYR 436 ILE 437 SER 438 ALA 439 ALA 440 ASP 441 ASN 442 SER 443 GLY 444 ARG 445 LYS 446 GLU 447 THR 448 TYR 449 PRO 450 PHE 451 ILE 452 GLY 453 GLU 454 PRO 455 ASP 456 PRO 457 PHE 458 LYS 459 PHE 460 THR 461 CYS 462 MET 463 ASN 464 GLU 465

Unit 2

NA 501 ASP 502 GLN 503 GOL 504 GOL 505 GOL 506 PO4 507 PO4 508 PO4 509 PO4 510 PO4 511 IMD 512 CL 513 AZI 514