4YPG - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURAL INSIGHTS INTO THE NEUTRALIZATION PROPERTIES OF A ANTI-INTERFERON MONOCLONAL ANTIBODY
• Keywords: THERAPEUTIC MAB, IFN-ALPHA2A, IMMUNE SYSTEM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4YPG	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	SIFALIMUMAB LIGHT CHAIN	A	215	1647	0
2	Protein	SIFALIMUMAB HEAVY CHAIN	B	219	1631	0
3	Protein	INTERFERON ALPHA-2	C	159	1296	0
4	Protein	INTERFERON ALPHA-2	D	161	1314	0
5	Protein	SIFALIMUMAB HEAVY CHAIN	H	219	1631	0
6	Protein	SIFALIMUMAB LIGHT CHAIN	L	215	1647	0
7	Ligand	SIFALIMUMAB LIGHT CHAIN	A	1	0	1
8	Ligand	SIFALIMUMAB HEAVY CHAIN	B	1	0	1
9	Ligand	INTERFERON ALPHA-2	C	1	0	1
10	Ligand	INTERFERON ALPHA-2	D	1	0	1
11	Ligand	SIFALIMUMAB HEAVY CHAIN	H	1	0	1
12	Ligand	SIFALIMUMAB LIGHT CHAIN	L	1	0	1
13	Water			47	0	47
total				1241	9166	53

Proteins

Unit 1	GLU 1 ILE 2 VAL 3 LEU 4 THR 5 GLN 6 SER 7 PRO 8 GLY 9 THR 10 LEU 11 SER 12 LEU 13 SER 14 PRO 15 GLY 16 GLU 17 ARG 18 ALA 19 THR 20 LEU 21 SER 22 CYS 23 ARG 24 ALA 25 SER 26 GLN 27 SER 28 VAL 29 SER 30 SER 31 THR 32 TYR 33 LEU 34 ALA 35 TRP 36 TYR 37 GLN 38 GLN 39 LYS 40 PRO 41 GLY 42 GLN 43 ALA 44 PRO 45 ARG 46 LEU 47 LEU 48 ILE 49 TYR 50 GLY 51 ALA 52 SER 53 SER 54 ARG 55 ALA 56 THR 57 GLY 58 ILE 59 PRO 60 ASP 61 ARG 62 PHE 63 SER 64 GLY 65 SER 66 GLY 67 SER 68 GLY 69 THR 70 ASP 71 PHE 72 THR 73 LEU 74 THR 75 ILE 76 SER 77 ARG 78 LEU 79 GLU 80 PRO 81 GLU 82 ASP 83 PHE 84 ALA 85 VAL 86 TYR 87 TYR 88 CYS 89 GLN 90 GLN 91 TYR 92 GLY 93 SER 94 SER 95 PRO 96 ARG 97 THR 98 PHE 99 GLY 100 GLN 101 GLY 102 THR 103 LYS 104 VAL 105 GLU 106 ILE 107 LYS 108 ARG 109 THR 110 VAL 111 ALA 112 ALA 113 PRO 114 SER 115 VAL 116 PHE 117 ILE 118 PHE 119 PRO 120 PRO 121 SER 122 ASP 123 GLU 124 GLN 125 LEU 126 LYS 127 SER 128 GLY 129 THR 130 ALA 131 SER 132 VAL 133 VAL 134 CYS 135 LEU 136 LEU 137 ASN 138 ASN 139 PHE 140 TYR 141 PRO 142 ARG 143 GLU 144 ALA 145 LYS 146 VAL 147 GLN 148 TRP 149 LYS 150 VAL 151 ASP 152 ASN 153 ALA 154 LEU 155 GLN 156 SER 157 GLY 158 ASN 159 SER 160 GLN 161 GLU 162 SER 163 VAL 164 THR 165 GLU 166 GLN 167 ASP 168 SER 169 LYS 170 ASP 171 SER 172 THR 173 TYR 174 SER 175 LEU 176 SER 177 SER 178 THR 179 LEU 180 THR 181 LEU 182 SER 183 LYS 184 ALA 185 ASP 186 TYR 187 GLU 188 LYS 189 HIS 190 LYS 191 VAL 192 TYR 193 ALA 194 CYS 195 GLU 196 VAL 197 THR 198 HIS 199 GLN 200 GLY 201 LEU 202 SER 203 SER 204 PRO 205 VAL 206 THR 207 LYS 208 SER 209 PHE 210 ASN 211 ARG 212 GLY 213 GLU 214 CYS 215
Unit 2	GLN 1 VAL 2 GLN 3 LEU 4 VAL 5 GLN 6 SER 7 GLY 8 ALA 9 GLU 10 VAL 11 LYS 12 LYS 13 PRO 14 GLY 15 ALA 16 SER 17 VAL 18 LYS 19 VAL 20 SER 21 CYS 22 LYS 23 ALA 24 SER 25 GLY 26 TYR 27 THR 28 PHE 29 THR 30 SER 31 TYR 32 SER 33 ILE 34 SER 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 GLN 43 GLY 44 LEU 45 GLU 46 TRP 47 MET 48 GLY 49 TRP 50 ILE 51 SER 52 VAL 53 TYR 54 ASN 55 GLY 56 ASN 57 THR 58 ASN 59 TYR 60 ALA 61 GLN 62 LYS 63 PHE 64 GLN 65 GLY 66 ARG 67 VAL 68 THR 69 MET 70 THR 71 THR 72 ASP 73 THR 74 SER 75 THR 76 SER 77 THR 78 ALA 79 TYR 80 LEU 81 GLU 82 LEU 83 ARG 84 SER 85 LEU 86 ARG 87 SER 88 ASP 89 ASP 90 THR 91 ALA 92 VAL 93 TYR 94 TYR 95 CYS 96 ALA 97 ARG 98 ASP 99 PRO 100 ILE 101 ALA 102 ALA 103 GLY 104 TYR 105 TRP 106 GLY 107 GLN 108 GLY 109 THR 110 LEU 111 VAL 112 THR 113 VAL 114 SER 115 SER 116 ALA 117 SER 118 THR 119 LYS 120 GLY 121 PRO 122 SER 123 VAL 124 PHE 125 PRO 126 LEU 127 ALA 128 PRO 129 SER 130 SER 131 LYS 132 SER 133 THR 134 SER 135 GLY 136 GLY 137 THR 138 ALA 139 ALA 140 LEU 141 GLY 142 CYS 143 LEU 144 VAL 145 LYS 146 ASP 147 TYR 148 PHE 149 PRO 150 GLU 151 PRO 152 VAL 153 THR 154 VAL 155 SER 156 TRP 157 ASN 158 SER 159 GLY 160 ALA 161 LEU 162 THR 163 SER 164 GLY 165 VAL 166 HIS 167 THR 168 PHE 169 PRO 170 ALA 171 VAL 172 LEU 173 GLN 174 SER 175 SER 176 GLY 177 LEU 178 TYR 179 SER 180 LEU 181 SER 182 SER 183 VAL 184 VAL 185 THR 186 VAL 187 PRO 188 SER 189 SER 190 SER 191 LEU 192 GLY 193 THR 194 GLN 195 THR 196 TYR 197 ILE 198 CYS 199 ASN 200 VAL 201 ASN 202 HIS 203 LYS 204 PRO 205 SER 206 ASN 207 THR 208 LYS 209 VAL 210 ASP 211 LYS 212 LYS 213 VAL 214 GLU 215 PRO 216 LYS 217 SER 218 CYS 219
Unit 3	THR -1 SER 0 CYS 1 ASP 2 LEU 3 PRO 4 GLN 5 THR 6 HIS 7 SER 8 LEU 9 GLY 10 SER 11 ARG 12 ARG 13 THR 14 LEU 15 MET 16 LEU 17 LEU 18 ALA 19 GLN 20 MET 21 ARG 22 LYS 23 ILE 24 SER 25 LEU 26 PHE 27 SER 28 CYS 29 LEU 30 LYS 31 ASP 32 ARG 33 HIS 34 ASP 35 PHE 36 GLY 37 PHE 38 PRO 39 GLN 40 GLU 41 GLU 42 PHE 43 GLY 44 ASN 45 GLN 46 PHE 47 GLN 48 LYS 49 ALA 50 GLU 51 THR 52 ILE 53 PRO 54 VAL 55 LEU 56 HIS 57 GLU 58 MET 59 ILE 60 GLN 61 GLN 62 ILE 63 PHE 64 ASN 65 LEU 66 PHE 67 SER 68 THR 69 LYS 70 ASP 71 SER 72 SER 73 ALA 74 ALA 75 TRP 76 ASP 77 GLU 78 THR 79 LEU 80 LEU 81 ASP 82 LYS 83 PHE 84 TYR 85 THR 86 GLU 87 LEU 88 TYR 89 GLN 90 GLN 91 LEU 92 ASN 93 ASP 94 LEU 95 GLU 96 ALA 97 CYS 98 VAL 99 ILE 100 GLN 101 GLY 102 VAL 103 GLY 104 VAL 105 THR 106 GLU 107 THR 108 PRO 109 LEU 110 MET 111 LYS 112 GLU 113 ASP 114 SER 115 ILE 116 LEU 117 ALA 118 VAL 119 ARG 120 LYS 121 TYR 122 PHE 123 GLN 124 ARG 125 ILE 126 THR 127 LEU 128 TYR 129 LEU 130 LYS 131 GLU 132 LYS 133 LYS 134 TYR 135 SER 136 PRO 137 CYS 138 ALA 139 TRP 140 GLU 141 VAL 142 VAL 143 ARG 144 ALA 145 GLU 146 ILE 147 MET 148 ARG 149 SER 150 PHE 151 SER 152 LEU 153 SER 154 THR 155 ASN 156 LEU 157
Unit 4	THR -1 SER 0 CYS 1 ASP 2 LEU 3 PRO 4 GLN 5 THR 6 HIS 7 SER 8 LEU 9 GLY 10 SER 11 ARG 12 ARG 13 THR 14 LEU 15 MET 16 LEU 17 LEU 18 ALA 19 GLN 20 MET 21 ARG 22 LYS 23 ILE 24 SER 25 LEU 26 PHE 27 SER 28 CYS 29 LEU 30 LYS 31 ASP 32 ARG 33 HIS 34 ASP 35 PHE 36 GLY 37 PHE 38 PRO 39 GLN 40 GLU 41 GLU 42 PHE 43 GLY 44 ASN 45 GLN 46 PHE 47 GLN 48 LYS 49 ALA 50 GLU 51 THR 52 ILE 53 PRO 54 VAL 55 LEU 56 HIS 57 GLU 58 MET 59 ILE 60 GLN 61 GLN 62 ILE 63 PHE 64 ASN 65 LEU 66 PHE 67 SER 68 THR 69 LYS 70 ASP 71 SER 72 SER 73 ALA 74 ALA 75 TRP 76 ASP 77 GLU 78 THR 79 LEU 80 LEU 81 ASP 82 LYS 83 PHE 84 TYR 85 THR 86 GLU 87 LEU 88 TYR 89 GLN 90 GLN 91 LEU 92 ASN 93 ASP 94 LEU 95 GLU 96 ALA 97 CYS 98 VAL 99 ILE 100 GLN 101 GLY 102 VAL 103 GLY 104 VAL 105 THR 106 GLU 107 THR 108 PRO 109 LEU 110 MET 111 LYS 112 GLU 113 ASP 114 SER 115 ILE 116 LEU 117 ALA 118 VAL 119 ARG 120 LYS 121 TYR 122 PHE 123 GLN 124 ARG 125 ILE 126 THR 127 LEU 128 TYR 129 LEU 130 LYS 131 GLU 132 LYS 133 LYS 134 TYR 135 SER 136 PRO 137 CYS 138 ALA 139 TRP 140 GLU 141 VAL 142 VAL 143 ARG 144 ALA 145 GLU 146 ILE 147 MET 148 ARG 149 SER 150 PHE 151 SER 152 LEU 153 SER 154 THR 155 ASN 156 LEU 157 GLN 158 GLU 159
Unit 5	GLN 1 VAL 2 GLN 3 LEU 4 VAL 5 GLN 6 SER 7 GLY 8 ALA 9 GLU 10 VAL 11 LYS 12 LYS 13 PRO 14 GLY 15 ALA 16 SER 17 VAL 18 LYS 19 VAL 20 SER 21 CYS 22 LYS 23 ALA 24 SER 25 GLY 26 TYR 27 THR 28 PHE 29 THR 30 SER 31 TYR 32 SER 33 ILE 34 SER 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 GLN 43 GLY 44 LEU 45 GLU 46 TRP 47 MET 48 GLY 49 TRP 50 ILE 51 SER 52 VAL 53 TYR 54 ASN 55 GLY 56 ASN 57 THR 58 ASN 59 TYR 60 ALA 61 GLN 62 LYS 63 PHE 64 GLN 65 GLY 66 ARG 67 VAL 68 THR 69 MET 70 THR 71 THR 72 ASP 73 THR 74 SER 75 THR 76 SER 77 THR 78 ALA 79 TYR 80 LEU 81 GLU 82 LEU 83 ARG 84 SER 85 LEU 86 ARG 87 SER 88 ASP 89 ASP 90 THR 91 ALA 92 VAL 93 TYR 94 TYR 95 CYS 96 ALA 97 ARG 98 ASP 99 PRO 100 ILE 101 ALA 102 ALA 103 GLY 104 TYR 105 TRP 106 GLY 107 GLN 108 GLY 109 THR 110 LEU 111 VAL 112 THR 113 VAL 114 SER 115 SER 116 ALA 117 SER 118 THR 119 LYS 120 GLY 121 PRO 122 SER 123 VAL 124 PHE 125 PRO 126 LEU 127 ALA 128 PRO 129 SER 130 SER 131 LYS 132 SER 133 THR 134 SER 135 GLY 136 GLY 137 THR 138 ALA 139 ALA 140 LEU 141 GLY 142 CYS 143 LEU 144 VAL 145 LYS 146 ASP 147 TYR 148 PHE 149 PRO 150 GLU 151 PRO 152 VAL 153 THR 154 VAL 155 SER 156 TRP 157 ASN 158 SER 159 GLY 160 ALA 161 LEU 162 THR 163 SER 164 GLY 165 VAL 166 HIS 167 THR 168 PHE 169 PRO 170 ALA 171 VAL 172 LEU 173 GLN 174 SER 175 SER 176 GLY 177 LEU 178 TYR 179 SER 180 LEU 181 SER 182 SER 183 VAL 184 VAL 185 THR 186 VAL 187 PRO 188 SER 189 SER 190 SER 191 LEU 192 GLY 193 THR 194 GLN 195 THR 196 TYR 197 ILE 198 CYS 199 ASN 200 VAL 201 ASN 202 HIS 203 LYS 204 PRO 205 SER 206 ASN 207 THR 208 LYS 209 VAL 210 ASP 211 LYS 212 LYS 213 VAL 214 GLU 215 PRO 216 LYS 217 SER 218 CYS 219
Unit 6	GLU 1 ILE 2 VAL 3 LEU 4 THR 5 GLN 6 SER 7 PRO 8 GLY 9 THR 10 LEU 11 SER 12 LEU 13 SER 14 PRO 15 GLY 16 GLU 17 ARG 18 ALA 19 THR 20 LEU 21 SER 22 CYS 23 ARG 24 ALA 25 SER 26 GLN 27 SER 28 VAL 29 SER 30 SER 31 THR 32 TYR 33 LEU 34 ALA 35 TRP 36 TYR 37 GLN 38 GLN 39 LYS 40 PRO 41 GLY 42 GLN 43 ALA 44 PRO 45 ARG 46 LEU 47 LEU 48 ILE 49 TYR 50 GLY 51 ALA 52 SER 53 SER 54 ARG 55 ALA 56 THR 57 GLY 58 ILE 59 PRO 60 ASP 61 ARG 62 PHE 63 SER 64 GLY 65 SER 66 GLY 67 SER 68 GLY 69 THR 70 ASP 71 PHE 72 THR 73 LEU 74 THR 75 ILE 76 SER 77 ARG 78 LEU 79 GLU 80 PRO 81 GLU 82 ASP 83 PHE 84 ALA 85 VAL 86 TYR 87 TYR 88 CYS 89 GLN 90 GLN 91 TYR 92 GLY 93 SER 94 SER 95 PRO 96 ARG 97 THR 98 PHE 99 GLY 100 GLN 101 GLY 102 THR 103 LYS 104 VAL 105 GLU 106 ILE 107 LYS 108 ARG 109 THR 110 VAL 111 ALA 112 ALA 113 PRO 114 SER 115 VAL 116 PHE 117 ILE 118 PHE 119 PRO 120 PRO 121 SER 122 ASP 123 GLU 124 GLN 125 LEU 126 LYS 127 SER 128 GLY 129 THR 130 ALA 131 SER 132 VAL 133 VAL 134 CYS 135 LEU 136 LEU 137 ASN 138 ASN 139 PHE 140 TYR 141 PRO 142 ARG 143 GLU 144 ALA 145 LYS 146 VAL 147 GLN 148 TRP 149 LYS 150 VAL 151 ASP 152 ASN 153 ALA 154 LEU 155 GLN 156 SER 157 GLY 158 ASN 159 SER 160 GLN 161 GLU 162 SER 163 VAL 164 THR 165 GLU 166 GLN 167 ASP 168 SER 169 LYS 170 ASP 171 SER 172 THR 173 TYR 174 SER 175 LEU 176 SER 177 SER 178 THR 179 LEU 180 THR 181 LEU 182 SER 183 LYS 184 ALA 185 ASP 186 TYR 187 GLU 188 LYS 189 HIS 190 LYS 191 VAL 192 TYR 193 ALA 194 CYS 195 GLU 196 VAL 197 THR 198 HIS 199 GLN 200 GLY 201 LEU 202 SER 203 SER 204 PRO 205 VAL 206 THR 207 LYS 208 SER 209 PHE 210 ASN 211 ARG 212 GLY 213 GLU 214 CYS 215

Ligands

Unit 7	NI 301
Unit 8	NI 301
Unit 9	NI 201
Unit 10	NI 201
Unit 11	NI 301
Unit 12	NI 301