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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF A TRIMERIC EXONUCLEASE PHOEXO I FROM PY HORIKOSHII OT3 IN COMPLEX WITH POLY-DA
Keywords EXONUCLEASE, HYDROLASE-DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4YOV     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   3-5 EXONUCLEASE PHOEXO I  A 226 1781 0
2  Other macromolecule   5'-D(*AP*AP*AP*AP*AP*AP*A)-3'  B 4 84 0
3  Protein   3-5 EXONUCLEASE PHOEXO I  C 226 1781 0
4  Other macromolecule   5'-D(*AP*AP*AP*AP*AP*AP*A)-3'  D 4 84 0
5  Protein   3-5 EXONUCLEASE PHOEXO I  E 224 1766 0
6  Other macromolecule   5'-D(*AP*AP*AP*AP*AP*AP*A)-3'  F 4 84 0
7 Water     129 0 129
total       817 5580 129
Proteins
Unit 1 MET1 ARG2 ILE3 VAL4 ALA5 ALA6 ASP7 THR8 GLY9 GLY10 ALA11 VAL12 LEU13 ASP14 GLU15 SER16 PHE17 GLN18 PRO19 VAL20 GLY21 LEU22 ILE23 ALA24 THR25 VAL26 ALA27 VAL28 LEU29 VAL30 GLU31 LYS32 PRO33 TYR34 LYS35 THR36 SER37 LYS38 ARG39 PHE40 LEU41 VAL42 LYS43 TYR44 ALA45 ASP46 PRO47 TYR48 ASN49 TYR50 ASP51 LEU52 SER53 GLY54 ARG55 GLN56 ALA57 ILE58 ARG59 ASP60 GLU61 ILE62 GLU63 LEU64 ALA65 ILE66 GLU67 LEU68 ALA69 ARG70 GLU71 VAL72 SER73 PRO74 ASP75 VAL76 ILE77 HIS78 LEU79 ASN80 SER81 THR82 LEU83 GLY84 GLY85 ILE86 GLU87 VAL88 ARG89 LYS90 LEU91 ASP92 GLU93 SER94 THR95 ILE96 ASP97 ALA98 LEU99 GLN100 ILE101 SER102 ASP103 ARG104 GLY105 LYS106 GLU107 ILE108 TRP109 LYS110 GLU111 LEU112 SER113 LYS114 ASP115 LEU116 GLN117 PRO118 LEU119 ALA120 LYS121 LYS122 PHE123 TRP124 GLU125 GLU126 THR127 GLY128 ILE129 GLU130 ILE131 ILE132 ALA133 ILE134 GLY135 LYS136 SER137 SER138 VAL139 PRO140 VAL141 ARG142 ILE143 ALA144 GLU145 ILE146 TYR147 ALA148 GLY149 ILE150 PHE151 SER152 VAL153 LYS154 TRP155 ALA156 LEU157 ASP158 ASN159 VAL160 GLY164 GLY165 LEU166 LEU167 VAL168 GLY169 LEU170 PRO171 ARG172 TYR173 MET174 GLU175 VAL176 GLU177 ILE178 LYS179 LYS180 ASP181 LYS182 ILE183 ILE184 GLY185 LYS186 SER187 LEU188 ASP189 PRO190 ARG191 GLU192 GLY193 GLY194 LEU195 TYR196 GLY197 GLU198 VAL199 LYS200 THR201 GLU202 VAL203 PRO204 GLN205 GLY206 ILE207 LYS208 TRP209 GLU210 LEU211 TYR212 PRO213 ASN214 PRO215 LEU216 VAL217 ARG218 ARG219 PHE220 MET221 VAL222 PHE223 GLU224 ILE225 THR226 SER227 LYS228 SER229
Unit 3 MET1 ARG2 ILE3 VAL4 ALA5 ALA6 ASP7 THR8 GLY9 GLY10 ALA11 VAL12 LEU13 ASP14 GLU15 SER16 PHE17 GLN18 PRO19 VAL20 GLY21 LEU22 ILE23 ALA24 THR25 VAL26 ALA27 VAL28 LEU29 VAL30 GLU31 LYS32 PRO33 TYR34 LYS35 THR36 SER37 LYS38 ARG39 PHE40 LEU41 VAL42 LYS43 TYR44 ALA45 ASP46 PRO47 TYR48 ASN49 TYR50 ASP51 LEU52 SER53 GLY54 ARG55 GLN56 ALA57 ILE58 ARG59 ASP60 GLU61 ILE62 GLU63 LEU64 ALA65 ILE66 GLU67 LEU68 ALA69 ARG70 GLU71 VAL72 SER73 PRO74 ASP75 VAL76 ILE77 HIS78 LEU79 ASN80 SER81 THR82 LEU83 GLY84 GLY85 ILE86 GLU87 VAL88 ARG89 LYS90 LEU91 ASP92 GLU93 SER94 THR95 ILE96 ASP97 ALA98 LEU99 GLN100 ILE101 SER102 ASP103 ARG104 GLY105 LYS106 GLU107 ILE108 TRP109 LYS110 GLU111 LEU112 SER113 LYS114 ASP115 LEU116 GLN117 PRO118 LEU119 ALA120 LYS121 LYS122 PHE123 TRP124 GLU125 GLU126 THR127 GLY128 ILE129 GLU130 ILE131 ILE132 ALA133 ILE134 GLY135 LYS136 SER137 SER138 VAL139 PRO140 VAL141 ARG142 ILE143 ALA144 GLU145 ILE146 TYR147 ALA148 GLY149 ILE150 PHE151 SER152 VAL153 LYS154 TRP155 ALA156 LEU157 ASP158 ASN159 VAL160 GLY164 GLY165 LEU166 LEU167 VAL168 GLY169 LEU170 PRO171 ARG172 TYR173 MET174 GLU175 VAL176 GLU177 ILE178 LYS179 LYS180 ASP181 LYS182 ILE183 ILE184 GLY185 LYS186 SER187 LEU188 ASP189 PRO190 ARG191 GLU192 GLY193 GLY194 LEU195 TYR196 GLY197 GLU198 VAL199 LYS200 THR201 GLU202 VAL203 PRO204 GLN205 GLY206 ILE207 LYS208 TRP209 GLU210 LEU211 TYR212 PRO213 ASN214 PRO215 LEU216 VAL217 ARG218 ARG219 PHE220 MET221 VAL222 PHE223 GLU224 ILE225 THR226 SER227 LYS228 SER229
Unit 5 MET1 ARG2 ILE3 VAL4 ALA5 ALA6 ASP7 THR8 GLY9 GLY10 ALA11 VAL12 LEU13 ASP14 GLU15 SER16 PHE17 GLN18 PRO19 VAL20 GLY21 LEU22 ILE23 ALA24 THR25 VAL26 ALA27 VAL28 LEU29 VAL30 GLU31 LYS32 PRO33 TYR34 LYS35 THR36 SER37 LYS38 ARG39 PHE40 LEU41 VAL42 LYS43 TYR44 ALA45 ASP46 PRO47 TYR48 ASN49 TYR50 ASP51 LEU52 SER53 GLY54 ARG55 GLN56 ALA57 ILE58 ARG59 ASP60 GLU61 ILE62 GLU63 LEU64 ALA65 ILE66 GLU67 LEU68 ALA69 ARG70 GLU71 VAL72 SER73 PRO74 ASP75 VAL76 ILE77 HIS78 LEU79 ASN80 SER81 THR82 LEU83 GLY84 GLY85 ILE86 GLU87 VAL88 ARG89 LYS90 LEU91 ASP92 GLU93 SER94 THR95 ILE96 ASP97 ALA98 LEU99 GLN100 ILE101 SER102 ASP103 ARG104 GLY105 LYS106 GLU107 ILE108 TRP109 LYS110 GLU111 LEU112 SER113 LYS114 ASP115 LEU116 GLN117 PRO118 LEU119 ALA120 LYS121 LYS122 PHE123 TRP124 GLU125 GLU126 THR127 GLY128 ILE129 GLU130 ILE131 ILE132 ALA133 ILE134 GLY135 LYS136 SER137 SER138 VAL139 PRO140 VAL141 ARG142 ILE143 ALA144 GLU145 ILE146 TYR147 ALA148 GLY149 ILE150 PHE151 SER152 VAL153 LYS154 TRP155 ALA156 LEU157 ASP158 ASN159 VAL160 GLY164 GLY165 LEU166 LEU167 VAL168 GLY169 LEU170 PRO171 ARG172 TYR173 MET174 GLU175 VAL176 GLU177 ILE178 LYS179 LYS180 ASP181 LYS182 ILE183 ILE184 GLY185 LYS186 SER187 LEU188 ASP189 PRO190 ARG191 GLU192 GLY193 GLY194 LEU195 TYR196 GLY197 GLU198 VAL199 LYS200 THR201 GLU202 VAL203 PRO204 GLN205 GLY206 ILE207 LYS208 TRP209 GLU210 LEU211 TYR212 PRO213 ASN214 PRO215 LEU216 VAL217 ARG218 ARG219 PHE220 MET221 VAL222 PHE223 GLU224 ILE225 THR226 SER227
Other macromolecules
Unit 2 DA4 DA5 DA6 DA7
Unit 4 DA4 DA5 DA6 DA7
Unit 6 DA4 DA5 DA6 DA7
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany