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Title | CRYSTAL STRUCTURE OF MONOCLONAL ANTI-HUMAN PODOPLANIN ANTIBO WITH BOUND PA PEPTIDE | |
Keywords | ANTIBODIES, MONOCLONAL, ANTIBODY AFFINITY, CHROMATOGRAPHY, A EPITOPES, RATS, IMMUNOGLOBULIN FAB FRAGMENTS, KINETICS, PEP PROTEIN BINDING, PROTEINS, RECOMBINANT FUSION PROTEINS, HUM PODOPLANIN, IMMUNE SYSTEM | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 4YO0 | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | HEAVY CHAIN OF ANTIGEN BINDING FRAGMENT, FAB | A | 209 | 1570 | 0 |
2 | Protein | LIGHT CHAIN OF ANTIGEN BINDING FRAGMENT, FAB | B | 210 | 1605 | 8 |
3 | Protein | HEAVY CHAIN OF ANTIGEN BINDING FRAGMENT, FAB | C | 198 | 1491 | 0 |
4 | Protein | LIGHT CHAIN OF ANTIGEN BINDING FRAGMENT, FAB | D | 210 | 1605 | 8 |
5 | Protein | PA14 PEPTIDE | E | 12 | 79 | 0 |
6 | Protein | PA14 PEPTIDE | F | 11 | 75 | 0 |
7 | Ligand | LIGHT CHAIN OF ANTIGEN BINDING FRAGMENT, FAB | D | 1 | 0 | 4 |
8 | Water | 499 | 0 | 499 | ||
total | 1350 | 6425 | 519 |
Unit 1 | GLU20 VAL21 GLN22 LEU23 VAL24 GLU25 SER26 GLY27 GLY28 GLY29 LEU30 VAL31 GLN32 PRO33 GLY34 ARG35 SER36 LEU37 LYS38 LEU39 SER40 CYS41 ALA42 ALA43 SER44 GLY45 PHE46 THR47 PHE48 SER49 ASN50 TYR51 GLY52 MET53 ALA54 TRP55 VAL56 ARG57 GLN58 THR59 PRO60 THR61 LYS62 GLY63 LEU64 GLU65 TRP66 ILE67 ALA68 SER69 ILE70 SER71 ALA72 GLY73 GLY74 ASP75 LYS76 THR77 TYR78 TYR79 GLY80 ASP81 SER82 VAL83 LYS84 GLY85 ARG86 PHE87 SER88 ILE89 SER90 ARG91 ASP92 ASN93 ALA94 LYS95 THR96 THR97 HIS98 TYR99 LEU100 GLN101 MET102 ASP103 SER104 LEU105 ARG106 SER107 GLU108 ASP109 THR110 ALA111 THR112 TYR113 TYR114 CYS115 ALA116 LYS117 THR118 SER119 ARG120 VAL121 TYR122 PHE123 ASP124 TYR125 TRP126 GLY127 GLN128 GLY129 VAL130 MET131 VAL132 THR133 VAL134 SER135 SER136 ALA137 GLU138 THR139 THR140 ALA141 PRO142 SER143 VAL144 TYR145 PRO146 LEU147 ALA148 PRO149 SER157 MET158 VAL159 THR160 LEU161 GLY162 CYS163 LEU164 VAL165 LYS166 GLY167 TYR168 PHE169 PRO170 GLU171 PRO172 VAL173 THR174 VAL175 THR176 TRP177 ASN178 SER179 GLY180 ALA181 LEU182 SER183 SER184 GLY185 VAL186 HIS187 THR188 PHE189 PRO190 ALA191 VAL192 LEU193 GLN194 SER195 GLY196 LEU197 TYR198 THR199 LEU200 THR201 SER202 SER203 VAL204 THR205 VAL206 PRO207 SER208 SER209 THR210 TRP211 SER212 SER213 GLN214 ALA215 VAL216 THR217 CYS218 ASN219 VAL220 ALA221 HIS222 PRO223 ALA224 SER225 SER226 THR227 LYS228 VAL229 ASP230 LYS231 LYS232 ILE233 VAL234 PRO235 |
Unit 2 | PCA20 PHE21 VAL22 LEU23 THR24 GLN25 PRO26 ASN27 SER28 VAL29 SER30 THR31 ASN32 LEU33 GLY34 SER35 THR36 VAL37 LYS38 LEU39 SER40 CYS41 LYS42 ARG43 SER44 THR45 GLY46 ASN47 ILE48 GLY49 SER50 ASN51 TYR52 VAL53 ASN54 TRP55 TYR56 GLN57 GLN58 HIS59 GLU60 GLY61 ARG62 SER63 PRO64 THR65 THR66 MET67 ILE68 TYR69 ARG70 ASP71 ASP72 LYS73 ARG74 PRO75 ASP76 GLY77 VAL78 PRO79 ASP80 ARG81 PHE82 SER83 GLY84 SER85 ILE86 ASP87 ARG88 SER89 SER90 ASN91 SER92 ALA93 LEU94 LEU95 THR96 ILE97 ASN98 ASN99 VAL100 GLN101 THR102 GLU103 ASP104 GLU105 ALA106 ASP107 TYR108 PHE109 CYS110 HIS111 SER112 TYR113 SER114 SER115 GLY116 ILE117 VAL118 PHE119 GLY120 GLY121 GLY122 THR123 LYS124 LEU125 THR126 VAL127 LEU128 GLY129 GLN130 PRO131 LYS132 SER133 THR134 PRO135 THR136 LEU137 THR138 VAL139 PHE140 PRO141 PRO142 SER143 THR144 GLU145 GLU146 LEU147 GLN148 GLY149 ASN150 LYS151 ALA152 THR153 LEU154 VAL155 CYS156 LEU157 ILE158 SER159 ASP160 PHE161 TYR162 PRO163 SER164 ASP165 VAL166 GLU167 VAL168 ALA169 TRP170 LYS171 ALA172 ASN173 GLY174 ALA175 PRO176 ILE177 SER178 GLN179 GLY180 VAL181 ASP182 THR183 ALA184 ASN185 PRO186 THR187 LYS188 GLN189 GLY190 ASN191 LYS192 TYR193 ILE194 ALA195 SER196 SER197 PHE198 LEU199 ARG200 LEU201 THR202 ALA203 GLU204 GLN205 TRP206 ARG207 SER208 ARG209 ASN210 SER211 PHE212 THR213 CYS214 GLN215 VAL216 THR217 HIS218 GLU219 GLY220 ASN221 THR222 VAL223 GLU224 LYS225 SER226 LEU227 SER228 PRO229 |
Unit 3 | GLU20 VAL21 GLN22 LEU23 VAL24 GLU25 SER26 GLY27 GLY28 GLY29 LEU30 VAL31 GLN32 PRO33 GLY34 ARG35 SER36 LEU37 LYS38 LEU39 SER40 CYS41 ALA42 ALA43 SER44 GLY45 PHE46 THR47 PHE48 SER49 ASN50 TYR51 GLY52 MET53 ALA54 TRP55 VAL56 ARG57 GLN58 THR59 PRO60 THR61 LYS62 GLY63 LEU64 GLU65 TRP66 ILE67 ALA68 SER69 ILE70 SER71 ALA72 GLY73 GLY74 ASP75 LYS76 THR77 TYR78 TYR79 GLY80 ASP81 SER82 VAL83 LYS84 GLY85 ARG86 PHE87 SER88 ILE89 SER90 ARG91 ASP92 ASN93 ALA94 LYS95 THR96 THR97 HIS98 TYR99 LEU100 GLN101 MET102 ASP103 SER104 LEU105 ARG106 SER107 GLU108 ASP109 THR110 ALA111 THR112 TYR113 TYR114 CYS115 ALA116 LYS117 THR118 SER119 ARG120 VAL121 TYR122 PHE123 ASP124 TYR125 TRP126 GLY127 GLN128 GLY129 VAL130 MET131 VAL132 THR133 VAL134 SER135 SER136 ALA137 GLU138 THR139 THR140 ALA141 PRO142 SER143 VAL144 TYR145 PRO146 LEU147 ALA148 PRO149 MET158 VAL159 THR160 LEU161 GLY162 CYS163 LEU164 VAL165 LYS166 GLY167 TYR168 PHE169 PRO170 GLU171 PRO172 VAL173 THR174 VAL175 THR176 TRP177 ASN178 SER179 GLY180 ALA181 LEU182 SER183 SER184 GLY185 VAL186 HIS187 THR188 PHE189 PRO190 ALA191 VAL192 LEU193 GLN194 SER195 GLY196 LEU197 TYR198 THR199 LEU200 THR201 SER202 SER203 VAL204 THR205 VAL216 THR217 CYS218 ASN219 VAL220 ALA221 HIS222 PRO223 ALA224 SER225 SER226 THR227 LYS228 VAL229 ASP230 LYS231 LYS232 ILE233 VAL234 PRO235 |
Unit 4 | PCA20 PHE21 VAL22 LEU23 THR24 GLN25 PRO26 ASN27 SER28 VAL29 SER30 THR31 ASN32 LEU33 GLY34 SER35 THR36 VAL37 LYS38 LEU39 SER40 CYS41 LYS42 ARG43 SER44 THR45 GLY46 ASN47 ILE48 GLY49 SER50 ASN51 TYR52 VAL53 ASN54 TRP55 TYR56 GLN57 GLN58 HIS59 GLU60 GLY61 ARG62 SER63 PRO64 THR65 THR66 MET67 ILE68 TYR69 ARG70 ASP71 ASP72 LYS73 ARG74 PRO75 ASP76 GLY77 VAL78 PRO79 ASP80 ARG81 PHE82 SER83 GLY84 SER85 ILE86 ASP87 ARG88 SER89 SER90 ASN91 SER92 ALA93 LEU94 LEU95 THR96 ILE97 ASN98 ASN99 VAL100 GLN101 THR102 GLU103 ASP104 GLU105 ALA106 ASP107 TYR108 PHE109 CYS110 HIS111 SER112 TYR113 SER114 SER115 GLY116 ILE117 VAL118 PHE119 GLY120 GLY121 GLY122 THR123 LYS124 LEU125 THR126 VAL127 LEU128 GLY129 GLN130 PRO131 LYS132 SER133 THR134 PRO135 THR136 LEU137 THR138 VAL139 PHE140 PRO141 PRO142 SER143 THR144 GLU145 GLU146 LEU147 GLN148 GLY149 ASN150 LYS151 ALA152 THR153 LEU154 VAL155 CYS156 LEU157 ILE158 SER159 ASP160 PHE161 TYR162 PRO163 SER164 ASP165 VAL166 GLU167 VAL168 ALA169 TRP170 LYS171 ALA172 ASN173 GLY174 ALA175 PRO176 ILE177 SER178 GLN179 GLY180 VAL181 ASP182 THR183 ALA184 ASN185 PRO186 THR187 LYS188 GLN189 GLY190 ASN191 LYS192 TYR193 ILE194 ALA195 SER196 SER197 PHE198 LEU199 ARG200 LEU201 THR202 ALA203 GLU204 GLN205 TRP206 ARG207 SER208 ARG209 ASN210 SER211 PHE212 THR213 CYS214 GLN215 VAL216 THR217 HIS218 GLU219 GLY220 ASN221 THR222 VAL223 GLU224 LYS225 SER226 LEU227 SER228 PRO229 |
Unit 5 | GLY3 VAL4 ALA5 MET6 PRO7 GLY8 ALA9 GLU10 ASP11 ASP12 VAL13 VAL14 |
Unit 6 | VAL4 ALA5 MET6 PRO7 GLY8 ALA9 GLU10 ASP11 ASP12 VAL13 VAL14 |
Unit 7 | EDO301 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |