4YO0 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF MONOCLONAL ANTI-HUMAN PODOPLANIN ANTIBO WITH BOUND PA PEPTIDE
• Keywords: ANTIBODIES, MONOCLONAL, ANTIBODY AFFINITY, CHROMATOGRAPHY, A EPITOPES, RATS, IMMUNOGLOBULIN FAB FRAGMENTS, KINETICS, PEP PROTEIN BINDING, PROTEINS, RECOMBINANT FUSION PROTEINS, HUM PODOPLANIN, IMMUNE SYSTEM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4YO0	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	HEAVY CHAIN OF ANTIGEN BINDING FRAGMENT, FAB	A	209	1570	0
2	Protein	LIGHT CHAIN OF ANTIGEN BINDING FRAGMENT, FAB	B	210	1605	8
3	Protein	HEAVY CHAIN OF ANTIGEN BINDING FRAGMENT, FAB	C	198	1491	0
4	Protein	LIGHT CHAIN OF ANTIGEN BINDING FRAGMENT, FAB	D	210	1605	8
5	Protein	PA14 PEPTIDE	E	12	79	0
6	Protein	PA14 PEPTIDE	F	11	75	0
7	Ligand	LIGHT CHAIN OF ANTIGEN BINDING FRAGMENT, FAB	D	1	0	4
8	Water			499	0	499
total				1350	6425	519

Proteins

Unit 1	GLU 20 VAL 21 GLN 22 LEU 23 VAL 24 GLU 25 SER 26 GLY 27 GLY 28 GLY 29 LEU 30 VAL 31 GLN 32 PRO 33 GLY 34 ARG 35 SER 36 LEU 37 LYS 38 LEU 39 SER 40 CYS 41 ALA 42 ALA 43 SER 44 GLY 45 PHE 46 THR 47 PHE 48 SER 49 ASN 50 TYR 51 GLY 52 MET 53 ALA 54 TRP 55 VAL 56 ARG 57 GLN 58 THR 59 PRO 60 THR 61 LYS 62 GLY 63 LEU 64 GLU 65 TRP 66 ILE 67 ALA 68 SER 69 ILE 70 SER 71 ALA 72 GLY 73 GLY 74 ASP 75 LYS 76 THR 77 TYR 78 TYR 79 GLY 80 ASP 81 SER 82 VAL 83 LYS 84 GLY 85 ARG 86 PHE 87 SER 88 ILE 89 SER 90 ARG 91 ASP 92 ASN 93 ALA 94 LYS 95 THR 96 THR 97 HIS 98 TYR 99 LEU 100 GLN 101 MET 102 ASP 103 SER 104 LEU 105 ARG 106 SER 107 GLU 108 ASP 109 THR 110 ALA 111 THR 112 TYR 113 TYR 114 CYS 115 ALA 116 LYS 117 THR 118 SER 119 ARG 120 VAL 121 TYR 122 PHE 123 ASP 124 TYR 125 TRP 126 GLY 127 GLN 128 GLY 129 VAL 130 MET 131 VAL 132 THR 133 VAL 134 SER 135 SER 136 ALA 137 GLU 138 THR 139 THR 140 ALA 141 PRO 142 SER 143 VAL 144 TYR 145 PRO 146 LEU 147 ALA 148 PRO 149 SER 157 MET 158 VAL 159 THR 160 LEU 161 GLY 162 CYS 163 LEU 164 VAL 165 LYS 166 GLY 167 TYR 168 PHE 169 PRO 170 GLU 171 PRO 172 VAL 173 THR 174 VAL 175 THR 176 TRP 177 ASN 178 SER 179 GLY 180 ALA 181 LEU 182 SER 183 SER 184 GLY 185 VAL 186 HIS 187 THR 188 PHE 189 PRO 190 ALA 191 VAL 192 LEU 193 GLN 194 SER 195 GLY 196 LEU 197 TYR 198 THR 199 LEU 200 THR 201 SER 202 SER 203 VAL 204 THR 205 VAL 206 PRO 207 SER 208 SER 209 THR 210 TRP 211 SER 212 SER 213 GLN 214 ALA 215 VAL 216 THR 217 CYS 218 ASN 219 VAL 220 ALA 221 HIS 222 PRO 223 ALA 224 SER 225 SER 226 THR 227 LYS 228 VAL 229 ASP 230 LYS 231 LYS 232 ILE 233 VAL 234 PRO 235
Unit 2	PCA 20 PHE 21 VAL 22 LEU 23 THR 24 GLN 25 PRO 26 ASN 27 SER 28 VAL 29 SER 30 THR 31 ASN 32 LEU 33 GLY 34 SER 35 THR 36 VAL 37 LYS 38 LEU 39 SER 40 CYS 41 LYS 42 ARG 43 SER 44 THR 45 GLY 46 ASN 47 ILE 48 GLY 49 SER 50 ASN 51 TYR 52 VAL 53 ASN 54 TRP 55 TYR 56 GLN 57 GLN 58 HIS 59 GLU 60 GLY 61 ARG 62 SER 63 PRO 64 THR 65 THR 66 MET 67 ILE 68 TYR 69 ARG 70 ASP 71 ASP 72 LYS 73 ARG 74 PRO 75 ASP 76 GLY 77 VAL 78 PRO 79 ASP 80 ARG 81 PHE 82 SER 83 GLY 84 SER 85 ILE 86 ASP 87 ARG 88 SER 89 SER 90 ASN 91 SER 92 ALA 93 LEU 94 LEU 95 THR 96 ILE 97 ASN 98 ASN 99 VAL 100 GLN 101 THR 102 GLU 103 ASP 104 GLU 105 ALA 106 ASP 107 TYR 108 PHE 109 CYS 110 HIS 111 SER 112 TYR 113 SER 114 SER 115 GLY 116 ILE 117 VAL 118 PHE 119 GLY 120 GLY 121 GLY 122 THR 123 LYS 124 LEU 125 THR 126 VAL 127 LEU 128 GLY 129 GLN 130 PRO 131 LYS 132 SER 133 THR 134 PRO 135 THR 136 LEU 137 THR 138 VAL 139 PHE 140 PRO 141 PRO 142 SER 143 THR 144 GLU 145 GLU 146 LEU 147 GLN 148 GLY 149 ASN 150 LYS 151 ALA 152 THR 153 LEU 154 VAL 155 CYS 156 LEU 157 ILE 158 SER 159 ASP 160 PHE 161 TYR 162 PRO 163 SER 164 ASP 165 VAL 166 GLU 167 VAL 168 ALA 169 TRP 170 LYS 171 ALA 172 ASN 173 GLY 174 ALA 175 PRO 176 ILE 177 SER 178 GLN 179 GLY 180 VAL 181 ASP 182 THR 183 ALA 184 ASN 185 PRO 186 THR 187 LYS 188 GLN 189 GLY 190 ASN 191 LYS 192 TYR 193 ILE 194 ALA 195 SER 196 SER 197 PHE 198 LEU 199 ARG 200 LEU 201 THR 202 ALA 203 GLU 204 GLN 205 TRP 206 ARG 207 SER 208 ARG 209 ASN 210 SER 211 PHE 212 THR 213 CYS 214 GLN 215 VAL 216 THR 217 HIS 218 GLU 219 GLY 220 ASN 221 THR 222 VAL 223 GLU 224 LYS 225 SER 226 LEU 227 SER 228 PRO 229
Unit 3	GLU 20 VAL 21 GLN 22 LEU 23 VAL 24 GLU 25 SER 26 GLY 27 GLY 28 GLY 29 LEU 30 VAL 31 GLN 32 PRO 33 GLY 34 ARG 35 SER 36 LEU 37 LYS 38 LEU 39 SER 40 CYS 41 ALA 42 ALA 43 SER 44 GLY 45 PHE 46 THR 47 PHE 48 SER 49 ASN 50 TYR 51 GLY 52 MET 53 ALA 54 TRP 55 VAL 56 ARG 57 GLN 58 THR 59 PRO 60 THR 61 LYS 62 GLY 63 LEU 64 GLU 65 TRP 66 ILE 67 ALA 68 SER 69 ILE 70 SER 71 ALA 72 GLY 73 GLY 74 ASP 75 LYS 76 THR 77 TYR 78 TYR 79 GLY 80 ASP 81 SER 82 VAL 83 LYS 84 GLY 85 ARG 86 PHE 87 SER 88 ILE 89 SER 90 ARG 91 ASP 92 ASN 93 ALA 94 LYS 95 THR 96 THR 97 HIS 98 TYR 99 LEU 100 GLN 101 MET 102 ASP 103 SER 104 LEU 105 ARG 106 SER 107 GLU 108 ASP 109 THR 110 ALA 111 THR 112 TYR 113 TYR 114 CYS 115 ALA 116 LYS 117 THR 118 SER 119 ARG 120 VAL 121 TYR 122 PHE 123 ASP 124 TYR 125 TRP 126 GLY 127 GLN 128 GLY 129 VAL 130 MET 131 VAL 132 THR 133 VAL 134 SER 135 SER 136 ALA 137 GLU 138 THR 139 THR 140 ALA 141 PRO 142 SER 143 VAL 144 TYR 145 PRO 146 LEU 147 ALA 148 PRO 149 MET 158 VAL 159 THR 160 LEU 161 GLY 162 CYS 163 LEU 164 VAL 165 LYS 166 GLY 167 TYR 168 PHE 169 PRO 170 GLU 171 PRO 172 VAL 173 THR 174 VAL 175 THR 176 TRP 177 ASN 178 SER 179 GLY 180 ALA 181 LEU 182 SER 183 SER 184 GLY 185 VAL 186 HIS 187 THR 188 PHE 189 PRO 190 ALA 191 VAL 192 LEU 193 GLN 194 SER 195 GLY 196 LEU 197 TYR 198 THR 199 LEU 200 THR 201 SER 202 SER 203 VAL 204 THR 205 VAL 216 THR 217 CYS 218 ASN 219 VAL 220 ALA 221 HIS 222 PRO 223 ALA 224 SER 225 SER 226 THR 227 LYS 228 VAL 229 ASP 230 LYS 231 LYS 232 ILE 233 VAL 234 PRO 235
Unit 4	PCA 20 PHE 21 VAL 22 LEU 23 THR 24 GLN 25 PRO 26 ASN 27 SER 28 VAL 29 SER 30 THR 31 ASN 32 LEU 33 GLY 34 SER 35 THR 36 VAL 37 LYS 38 LEU 39 SER 40 CYS 41 LYS 42 ARG 43 SER 44 THR 45 GLY 46 ASN 47 ILE 48 GLY 49 SER 50 ASN 51 TYR 52 VAL 53 ASN 54 TRP 55 TYR 56 GLN 57 GLN 58 HIS 59 GLU 60 GLY 61 ARG 62 SER 63 PRO 64 THR 65 THR 66 MET 67 ILE 68 TYR 69 ARG 70 ASP 71 ASP 72 LYS 73 ARG 74 PRO 75 ASP 76 GLY 77 VAL 78 PRO 79 ASP 80 ARG 81 PHE 82 SER 83 GLY 84 SER 85 ILE 86 ASP 87 ARG 88 SER 89 SER 90 ASN 91 SER 92 ALA 93 LEU 94 LEU 95 THR 96 ILE 97 ASN 98 ASN 99 VAL 100 GLN 101 THR 102 GLU 103 ASP 104 GLU 105 ALA 106 ASP 107 TYR 108 PHE 109 CYS 110 HIS 111 SER 112 TYR 113 SER 114 SER 115 GLY 116 ILE 117 VAL 118 PHE 119 GLY 120 GLY 121 GLY 122 THR 123 LYS 124 LEU 125 THR 126 VAL 127 LEU 128 GLY 129 GLN 130 PRO 131 LYS 132 SER 133 THR 134 PRO 135 THR 136 LEU 137 THR 138 VAL 139 PHE 140 PRO 141 PRO 142 SER 143 THR 144 GLU 145 GLU 146 LEU 147 GLN 148 GLY 149 ASN 150 LYS 151 ALA 152 THR 153 LEU 154 VAL 155 CYS 156 LEU 157 ILE 158 SER 159 ASP 160 PHE 161 TYR 162 PRO 163 SER 164 ASP 165 VAL 166 GLU 167 VAL 168 ALA 169 TRP 170 LYS 171 ALA 172 ASN 173 GLY 174 ALA 175 PRO 176 ILE 177 SER 178 GLN 179 GLY 180 VAL 181 ASP 182 THR 183 ALA 184 ASN 185 PRO 186 THR 187 LYS 188 GLN 189 GLY 190 ASN 191 LYS 192 TYR 193 ILE 194 ALA 195 SER 196 SER 197 PHE 198 LEU 199 ARG 200 LEU 201 THR 202 ALA 203 GLU 204 GLN 205 TRP 206 ARG 207 SER 208 ARG 209 ASN 210 SER 211 PHE 212 THR 213 CYS 214 GLN 215 VAL 216 THR 217 HIS 218 GLU 219 GLY 220 ASN 221 THR 222 VAL 223 GLU 224 LYS 225 SER 226 LEU 227 SER 228 PRO 229
Unit 5	GLY 3 VAL 4 ALA 5 MET 6 PRO 7 GLY 8 ALA 9 GLU 10 ASP 11 ASP 12 VAL 13 VAL 14
Unit 6	VAL 4 ALA 5 MET 6 PRO 7 GLY 8 ALA 9 GLU 10 ASP 11 ASP 12 VAL 13 VAL 14

Ligands

Unit 7

EDO 301