4YNQ - Sequence, Chains, Asymmetric and Biological Units

• Title: TREX1-DSDNA COMPLEX
• Keywords: PROTEIN-DNA COMPLEX, EXONUCLEASE, TREX1, HYDROLASE-DNA COMPL
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4YNQ	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	THREE-PRIME REPAIR EXONUCLEASE 1	A	227	1752	0
2	Protein	THREE-PRIME REPAIR EXONUCLEASE 1	B	225	1734	0
3	Protein	THREE-PRIME REPAIR EXONUCLEASE 1	C	227	1744	0
4	Protein	THREE-PRIME REPAIR EXONUCLEASE 1	D	224	1734	0
5	Other macromolecule	DNA (24-MER)	E	21	431	0
6	Other macromolecule		F	20	412	0
7	Other macromolecule	DNA (24-MER)	G	21	431	0
8	Other macromolecule		H	20	412	0
9	Ligand	THREE-PRIME REPAIR EXONUCLEASE 1	A	1	0	1
10	Ligand	THREE-PRIME REPAIR EXONUCLEASE 1	B	1	0	1
11	Ligand	THREE-PRIME REPAIR EXONUCLEASE 1	C	1	0	1
12	Ligand	THREE-PRIME REPAIR EXONUCLEASE 1	D	1	0	1
13	Ligand		H	1	0	17
14	Water			39	0	39
total				1029	8650	60

Proteins

Unit 1	THR 5 LEU 6 PRO 7 HIS 8 GLY 9 HIS 10 MET 11 GLN 12 THR 13 LEU 14 ILE 15 PHE 16 LEU 17 ASN 18 LEU 19 GLU 20 ALA 21 THR 22 GLY 23 LEU 24 PRO 25 SER 26 SER 27 ARG 28 PRO 29 GLU 30 VAL 31 THR 32 GLU 33 LEU 34 CYS 35 LEU 36 LEU 37 ALA 38 VAL 39 HIS 40 ARG 41 ARG 42 ALA 43 LEU 44 GLU 45 ASN 46 THR 47 SER 48 ILE 49 SER 50 GLN 51 GLY 52 HIS 53 PRO 54 PRO 55 PRO 56 VAL 57 PRO 58 ARG 59 PRO 60 PRO 61 ARG 62 VAL 63 VAL 64 ASP 65 LYS 66 LEU 67 SER 68 LEU 69 CYS 70 ILE 71 ALA 72 PRO 73 GLY 74 LYS 75 ALA 76 CYS 77 SER 78 PRO 79 GLY 80 ALA 81 SER 82 GLU 83 ILE 84 THR 85 GLY 86 LEU 87 SER 88 LYS 89 ALA 90 GLU 91 LEU 92 GLU 93 VAL 94 GLN 95 GLY 96 ARG 97 GLN 98 ARG 99 PHE 100 ASP 101 ASP 102 ASN 103 LEU 104 ALA 105 ILE 106 LEU 107 LEU 108 ARG 109 ALA 110 PHE 111 LEU 112 GLN 113 ARG 114 GLN 115 PRO 116 GLN 117 PRO 118 CYS 119 CYS 120 LEU 121 VAL 122 ALA 123 HIS 124 ASN 125 GLY 126 ASP 127 ARG 128 TYR 129 ASP 130 PHE 131 PRO 132 LEU 133 LEU 134 GLN 135 THR 136 GLU 137 LEU 138 ALA 139 ARG 140 LEU 141 SER 142 THR 143 PRO 144 SER 145 PRO 146 LEU 147 ASP 148 GLY 149 THR 150 PHE 151 CYS 152 VAL 153 ASP 154 SER 155 ILE 156 ALA 157 ALA 158 LEU 159 LYS 160 ALA 161 LEU 162 GLU 163 GLN 164 ALA 165 SER 166 ASN 171 GLY 172 SER 173 ARG 174 LYS 175 SER 176 TYR 177 SER 178 LEU 179 GLY 180 SER 181 ILE 182 TYR 183 THR 184 ARG 185 LEU 186 TYR 187 TRP 188 GLN 189 ALA 190 PRO 191 THR 192 ASP 193 SER 194 HIS 195 THR 196 ALA 197 GLU 198 GLY 199 ASP 200 VAL 201 LEU 202 THR 203 LEU 204 LEU 205 SER 206 ILE 207 CYS 208 GLN 209 TRP 210 LYS 211 PRO 212 GLN 213 ALA 214 LEU 215 LEU 216 GLN 217 TRP 218 VAL 219 ASP 220 GLU 221 HIS 222 ALA 223 ARG 224 PRO 225 PHE 226 SER 227 THR 228 VAL 229 LYS 230 PRO 231 MET 232 TYR 233 GLY 234 THR 235
Unit 2	THR 5 LEU 6 PRO 7 HIS 8 GLY 9 HIS 10 MET 11 GLN 12 THR 13 LEU 14 ILE 15 PHE 16 LEU 17 ASN 18 LEU 19 GLU 20 ALA 21 THR 22 GLY 23 LEU 24 PRO 25 SER 26 SER 27 ARG 28 PRO 29 GLU 30 VAL 31 THR 32 GLU 33 LEU 34 CYS 35 LEU 36 LEU 37 ALA 38 VAL 39 HIS 40 ARG 41 ARG 42 ALA 43 LEU 44 GLU 45 ASN 46 THR 47 SER 48 ILE 49 SER 50 GLN 51 GLY 52 HIS 53 PRO 54 PRO 55 PRO 56 VAL 57 PRO 58 ARG 59 PRO 60 PRO 61 ARG 62 VAL 63 VAL 64 ASP 65 LYS 66 LEU 67 SER 68 LEU 69 CYS 70 ILE 71 ALA 72 PRO 73 GLY 74 LYS 75 ALA 76 CYS 77 SER 78 PRO 79 GLY 80 ALA 81 SER 82 GLU 83 ILE 84 THR 85 GLY 86 LEU 87 SER 88 LYS 89 ALA 90 GLU 91 LEU 92 GLU 93 VAL 94 GLN 95 GLY 96 ARG 97 GLN 98 ARG 99 PHE 100 ASP 101 ASP 102 ASN 103 LEU 104 ALA 105 ILE 106 LEU 107 LEU 108 ARG 109 ALA 110 PHE 111 LEU 112 GLN 113 ARG 114 GLN 115 PRO 116 GLN 117 PRO 118 CYS 119 CYS 120 LEU 121 VAL 122 ALA 123 HIS 124 ASN 125 GLY 126 ASP 127 ARG 128 TYR 129 ASP 130 PHE 131 PRO 132 LEU 133 LEU 134 GLN 135 THR 136 GLU 137 LEU 138 ALA 139 ARG 140 LEU 141 SER 142 THR 143 PRO 144 SER 145 PRO 146 LEU 147 ASP 148 GLY 149 THR 150 PHE 151 CYS 152 VAL 153 ASP 154 SER 155 ILE 156 ALA 157 ALA 158 LEU 159 LYS 160 ALA 161 LEU 162 GLU 163 GLN 164 ALA 165 SER 166 SER 167 PRO 168 ARG 174 LYS 175 SER 176 TYR 177 SER 178 LEU 179 GLY 180 SER 181 ILE 182 TYR 183 THR 184 ARG 185 LEU 186 TYR 187 TRP 188 GLN 189 ALA 190 PRO 191 THR 192 ASP 193 SER 194 HIS 195 THR 196 ALA 197 GLU 198 GLY 199 ASP 200 VAL 201 LEU 202 THR 203 LEU 204 LEU 205 SER 206 ILE 207 CYS 208 GLN 209 TRP 210 LYS 211 PRO 212 GLN 213 ALA 214 LEU 215 LEU 216 GLN 217 TRP 218 VAL 219 ASP 220 GLU 221 HIS 222 ALA 223 ARG 224 PRO 225 PHE 226 SER 227 THR 228 VAL 229 LYS 230 PRO 231 MET 232 TYR 233 GLY 234
Unit 3	THR 5 LEU 6 PRO 7 HIS 8 GLY 9 HIS 10 MET 11 GLN 12 THR 13 LEU 14 ILE 15 PHE 16 LEU 17 ASN 18 LEU 19 GLU 20 ALA 21 THR 22 GLY 23 LEU 24 PRO 25 SER 26 SER 27 ARG 28 PRO 29 GLU 30 VAL 31 THR 32 GLU 33 LEU 34 CYS 35 LEU 36 LEU 37 ALA 38 VAL 39 HIS 40 ARG 41 ARG 42 ALA 43 LEU 44 GLU 45 ASN 46 THR 47 SER 48 ILE 49 SER 50 GLN 51 GLY 52 HIS 53 PRO 54 PRO 55 PRO 56 VAL 57 PRO 58 ARG 59 PRO 60 PRO 61 ARG 62 VAL 63 VAL 64 ASP 65 LYS 66 LEU 67 SER 68 LEU 69 CYS 70 ILE 71 ALA 72 PRO 73 GLY 74 LYS 75 ALA 76 CYS 77 SER 78 PRO 79 GLY 80 ALA 81 SER 82 GLU 83 ILE 84 THR 85 GLY 86 LEU 87 SER 88 LYS 89 ALA 90 GLU 91 LEU 92 GLU 93 VAL 94 GLN 95 GLY 96 ARG 97 GLN 98 ARG 99 PHE 100 ASP 101 ASP 102 ASN 103 LEU 104 ALA 105 ILE 106 LEU 107 LEU 108 ARG 109 ALA 110 PHE 111 LEU 112 GLN 113 ARG 114 GLN 115 PRO 116 GLN 117 PRO 118 CYS 119 CYS 120 LEU 121 VAL 122 ALA 123 HIS 124 ASN 125 GLY 126 ASP 127 ARG 128 TYR 129 ASP 130 PHE 131 PRO 132 LEU 133 LEU 134 GLN 135 THR 136 GLU 137 LEU 138 ALA 139 ARG 140 LEU 141 SER 142 THR 143 PRO 144 SER 145 PRO 146 LEU 147 ASP 148 GLY 149 THR 150 PHE 151 CYS 152 VAL 153 ASP 154 SER 155 ILE 156 ALA 157 ALA 158 LEU 159 LYS 160 ALA 161 LEU 162 GLU 163 GLN 164 ALA 165 SER 166 SER 167 GLY 172 SER 173 ARG 174 LYS 175 SER 176 TYR 177 SER 178 LEU 179 GLY 180 SER 181 ILE 182 TYR 183 THR 184 ARG 185 LEU 186 TYR 187 TRP 188 GLN 189 ALA 190 PRO 191 THR 192 ASP 193 SER 194 HIS 195 THR 196 ALA 197 GLU 198 GLY 199 ASP 200 VAL 201 LEU 202 THR 203 LEU 204 LEU 205 SER 206 ILE 207 CYS 208 GLN 209 TRP 210 LYS 211 PRO 212 GLN 213 ALA 214 LEU 215 LEU 216 GLN 217 TRP 218 VAL 219 ASP 220 GLU 221 HIS 222 ALA 223 ARG 224 PRO 225 PHE 226 SER 227 THR 228 VAL 229 LYS 230 PRO 231 MET 232 TYR 233 GLY 234 THR 235
Unit 4	THR 5 LEU 6 PRO 7 HIS 8 GLY 9 HIS 10 MET 11 GLN 12 THR 13 LEU 14 ILE 15 PHE 16 LEU 17 ASN 18 LEU 19 GLU 20 ALA 21 THR 22 GLY 23 LEU 24 PRO 25 SER 26 SER 27 ARG 28 PRO 29 GLU 30 VAL 31 THR 32 GLU 33 LEU 34 CYS 35 LEU 36 LEU 37 ALA 38 VAL 39 HIS 40 ARG 41 ARG 42 ALA 43 LEU 44 GLU 45 ASN 46 THR 47 SER 48 ILE 49 SER 50 GLN 51 GLY 52 HIS 53 PRO 54 PRO 55 PRO 56 VAL 57 PRO 58 ARG 59 PRO 60 PRO 61 ARG 62 VAL 63 VAL 64 ASP 65 LYS 66 LEU 67 SER 68 LEU 69 CYS 70 ILE 71 ALA 72 PRO 73 GLY 74 LYS 75 ALA 76 CYS 77 SER 78 PRO 79 GLY 80 ALA 81 SER 82 GLU 83 ILE 84 THR 85 GLY 86 LEU 87 SER 88 LYS 89 ALA 90 GLU 91 LEU 92 GLU 93 VAL 94 GLN 95 GLY 96 ARG 97 GLN 98 ARG 99 PHE 100 ASP 101 ASP 102 ASN 103 LEU 104 ALA 105 ILE 106 LEU 107 LEU 108 ARG 109 ALA 110 PHE 111 LEU 112 GLN 113 ARG 114 GLN 115 PRO 116 GLN 117 PRO 118 CYS 119 CYS 120 LEU 121 VAL 122 ALA 123 HIS 124 ASN 125 GLY 126 ASP 127 ARG 128 TYR 129 ASP 130 PHE 131 PRO 132 LEU 133 LEU 134 GLN 135 THR 136 GLU 137 LEU 138 ALA 139 ARG 140 LEU 141 SER 142 THR 143 PRO 144 SER 145 PRO 146 LEU 147 ASP 148 GLY 149 THR 150 PHE 151 CYS 152 VAL 153 ASP 154 SER 155 ILE 156 ALA 157 ALA 158 LEU 159 LYS 160 ALA 161 LEU 162 GLU 163 GLN 164 ALA 165 SER 173 ARG 174 LYS 175 SER 176 TYR 177 SER 178 LEU 179 GLY 180 SER 181 ILE 182 TYR 183 THR 184 ARG 185 LEU 186 TYR 187 TRP 188 GLN 189 ALA 190 PRO 191 THR 192 ASP 193 SER 194 HIS 195 THR 196 ALA 197 GLU 198 GLY 199 ASP 200 VAL 201 LEU 202 THR 203 LEU 204 LEU 205 SER 206 ILE 207 CYS 208 GLN 209 TRP 210 LYS 211 PRO 212 GLN 213 ALA 214 LEU 215 LEU 216 GLN 217 TRP 218 VAL 219 ASP 220 GLU 221 HIS 222 ALA 223 ARG 224 PRO 225 PHE 226 SER 227 THR 228 VAL 229 LYS 230 PRO 231 MET 232 TYR 233 GLY 234 THR 235

Other macromolecules

Unit 5	DC 4 DG 5 DT 6 DG 7 DC 8 DT 9 DG 10 DA 11 DC 12 DG 13 DT 14 DC 15 DA 16 DG 17 DC 18 DA 19 DC 20 DG 21 DA 22 DC 23 DG 24
Unit 6	DG 5 DT 6 DG 7 DC 8 DT 9 DG 10 DA 11 DC 12 DG 13 DT 14 DC 15 DA 16 DG 17 DC 18 DA 19 DC 20 DG 21 DA 22 DC 23 DG 24
Unit 7	DC 4 DG 5 DT 6 DG 7 DC 8 DT 9 DG 10 DA 11 DC 12 DG 13 DT 14 DC 15 DA 16 DG 17 DC 18 DA 19 DC 20 DG 21 DA 22 DC 23 DG 24
Unit 8	DG 5 DT 6 DG 7 DC 8 DT 9 DG 10 DA 11 DC 12 DG 13 DT 14 DC 15 DA 16 DG 17 DC 18 DA 19 DC 20 DG 21 DA 22 DC 23 DG 24

Ligands

Unit 9	MG 301
Unit 10	MG 301
Unit 11	MG 301
Unit 12	MG 301
Unit 13	DT 101