4YM5 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE HUMAN NUCLEOSOME CONTAINING 6-4PP (
• Keywords: (6-4) PHOTOPRODUCT, NUCLEOSOME, HISTONE, DNA BINDING, STRUCT PROTEIN-DNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4YM5	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	HISTONE H3.1	A	98	807	0
2	Protein	HISTONE H4	B	79	627	0
3	Protein	HISTONE H2A TYPE 1-B/E	C	105	810	0
4	Protein	HISTONE H2B TYPE 1-J	D	93	725	0
5	Protein	HISTONE H3.1	E	97	801	0
6	Protein	HISTONE H4	F	87	703	0
7	Protein	HISTONE H2A TYPE 1-B/E	G	103	796	0
8	Protein	HISTONE H2B TYPE 1-J	H	97	766	0
9	Other macromolecule	144 MER-DNA	I	144	2929	40
10	Other macromolecule	144-MER DNA	J	144	2930	40
total				1047	11894	80

Proteins

Unit 1	PRO 38 HIS 39 ARG 40 TYR 41 ARG 42 PRO 43 GLY 44 THR 45 VAL 46 ALA 47 LEU 48 ARG 49 GLU 50 ILE 51 ARG 52 ARG 53 TYR 54 GLN 55 LYS 56 SER 57 THR 58 GLU 59 LEU 60 LEU 61 ILE 62 ARG 63 LYS 64 LEU 65 PRO 66 PHE 67 GLN 68 ARG 69 LEU 70 VAL 71 ARG 72 GLU 73 ILE 74 ALA 75 GLN 76 ASP 77 PHE 78 LYS 79 THR 80 ASP 81 LEU 82 ARG 83 PHE 84 GLN 85 SER 86 SER 87 ALA 88 VAL 89 MET 90 ALA 91 LEU 92 GLN 93 GLU 94 ALA 95 CYS 96 GLU 97 ALA 98 TYR 99 LEU 100 VAL 101 GLY 102 LEU 103 PHE 104 GLU 105 ASP 106 THR 107 ASN 108 LEU 109 CYS 110 ALA 111 ILE 112 HIS 113 ALA 114 LYS 115 ARG 116 VAL 117 THR 118 ILE 119 MET 120 PRO 121 LYS 122 ASP 123 ILE 124 GLN 125 LEU 126 ALA 127 ARG 128 ARG 129 ILE 130 ARG 131 GLY 132 GLU 133 ARG 134 ALA 135
Unit 2	ASP 24 ASN 25 ILE 26 GLN 27 GLY 28 ILE 29 THR 30 LYS 31 PRO 32 ALA 33 ILE 34 ARG 35 ARG 36 LEU 37 ALA 38 ARG 39 ARG 40 GLY 41 GLY 42 VAL 43 LYS 44 ARG 45 ILE 46 SER 47 GLY 48 LEU 49 ILE 50 TYR 51 GLU 52 GLU 53 THR 54 ARG 55 GLY 56 VAL 57 LEU 58 LYS 59 VAL 60 PHE 61 LEU 62 GLU 63 ASN 64 VAL 65 ILE 66 ARG 67 ASP 68 ALA 69 VAL 70 THR 71 TYR 72 THR 73 GLU 74 HIS 75 ALA 76 LYS 77 ARG 78 LYS 79 THR 80 VAL 81 THR 82 ALA 83 MET 84 ASP 85 VAL 86 VAL 87 TYR 88 ALA 89 LEU 90 LYS 91 ARG 92 GLN 93 GLY 94 ARG 95 THR 96 LEU 97 TYR 98 GLY 99 PHE 100 GLY 101 GLY 102
Unit 3	ALA 14 LYS 15 THR 16 ARG 17 SER 18 SER 19 ARG 20 ALA 21 GLY 22 LEU 23 GLN 24 PHE 25 PRO 26 VAL 27 GLY 28 ARG 29 VAL 30 HIS 31 ARG 32 LEU 33 LEU 34 ARG 35 LYS 36 GLY 37 ASN 38 TYR 39 SER 40 GLU 41 ARG 42 VAL 43 GLY 44 ALA 45 GLY 46 ALA 47 PRO 48 VAL 49 TYR 50 LEU 51 ALA 52 ALA 53 VAL 54 LEU 55 GLU 56 TYR 57 LEU 58 THR 59 ALA 60 GLU 61 ILE 62 LEU 63 GLU 64 LEU 65 ALA 66 GLY 67 ASN 68 ALA 69 ALA 70 ARG 71 ASP 72 ASN 73 LYS 74 LYS 75 THR 76 ARG 77 ILE 78 ILE 79 PRO 80 ARG 81 HIS 82 LEU 83 GLN 84 LEU 85 ALA 86 ILE 87 ARG 88 ASN 89 ASP 90 GLU 91 GLU 92 LEU 93 ASN 94 LYS 95 LEU 96 LEU 97 GLY 98 ARG 99 VAL 100 THR 101 ILE 102 ALA 103 GLN 104 GLY 105 GLY 106 VAL 107 LEU 108 PRO 109 ASN 110 ILE 111 GLN 112 ALA 113 VAL 114 LEU 115 LEU 116 PRO 117 LYS 118
Unit 4	SER 32 ARG 33 LYS 34 GLU 35 SER 36 TYR 37 SER 38 ILE 39 TYR 40 VAL 41 TYR 42 LYS 43 VAL 44 LEU 45 LYS 46 GLN 47 VAL 48 HIS 49 PRO 50 ASP 51 THR 52 GLY 53 ILE 54 SER 55 SER 56 LYS 57 ALA 58 MET 59 GLY 60 ILE 61 MET 62 ASN 63 SER 64 PHE 65 VAL 66 ASN 67 ASP 68 ILE 69 PHE 70 GLU 71 ARG 72 ILE 73 ALA 74 GLY 75 GLU 76 ALA 77 SER 78 ARG 79 LEU 80 ALA 81 HIS 82 TYR 83 ASN 84 LYS 85 ARG 86 SER 87 THR 88 ILE 89 THR 90 SER 91 ARG 92 GLU 93 ILE 94 GLN 95 THR 96 ALA 97 VAL 98 ARG 99 LEU 100 LEU 101 LEU 102 PRO 103 GLY 104 GLU 105 LEU 106 ALA 107 LYS 108 HIS 109 ALA 110 VAL 111 SER 112 GLU 113 GLY 114 THR 115 LYS 116 ALA 117 VAL 118 THR 119 LYS 120 TYR 121 THR 122 SER 123 ALA 124
Unit 5	PRO 38 HIS 39 ARG 40 TYR 41 ARG 42 PRO 43 GLY 44 THR 45 VAL 46 ALA 47 LEU 48 ARG 49 GLU 50 ILE 51 ARG 52 ARG 53 TYR 54 GLN 55 LYS 56 SER 57 THR 58 GLU 59 LEU 60 LEU 61 ILE 62 ARG 63 LYS 64 LEU 65 PRO 66 PHE 67 GLN 68 ARG 69 LEU 70 VAL 71 ARG 72 GLU 73 ILE 74 ALA 75 GLN 76 ASP 77 PHE 78 LYS 79 THR 80 ASP 81 LEU 82 ARG 83 PHE 84 GLN 85 SER 86 SER 87 ALA 88 VAL 89 MET 90 ALA 91 LEU 92 GLN 93 GLU 94 ALA 95 CYS 96 GLU 97 ALA 98 TYR 99 LEU 100 VAL 101 GLY 102 LEU 103 PHE 104 GLU 105 ASP 106 THR 107 ASN 108 LEU 109 CYS 110 ALA 111 ILE 112 HIS 113 ALA 114 LYS 115 ARG 116 VAL 117 THR 118 ILE 119 MET 120 PRO 121 LYS 122 ASP 123 ILE 124 GLN 125 LEU 126 ALA 127 ARG 128 ARG 129 ILE 130 ARG 131 GLY 132 GLU 133 ARG 134
Unit 6	LYS 16 ARG 17 HIS 18 ARG 19 LYS 20 VAL 21 LEU 22 ARG 23 ASP 24 ASN 25 ILE 26 GLN 27 GLY 28 ILE 29 THR 30 LYS 31 PRO 32 ALA 33 ILE 34 ARG 35 ARG 36 LEU 37 ALA 38 ARG 39 ARG 40 GLY 41 GLY 42 VAL 43 LYS 44 ARG 45 ILE 46 SER 47 GLY 48 LEU 49 ILE 50 TYR 51 GLU 52 GLU 53 THR 54 ARG 55 GLY 56 VAL 57 LEU 58 LYS 59 VAL 60 PHE 61 LEU 62 GLU 63 ASN 64 VAL 65 ILE 66 ARG 67 ASP 68 ALA 69 VAL 70 THR 71 TYR 72 THR 73 GLU 74 HIS 75 ALA 76 LYS 77 ARG 78 LYS 79 THR 80 VAL 81 THR 82 ALA 83 MET 84 ASP 85 VAL 86 VAL 87 TYR 88 ALA 89 LEU 90 LYS 91 ARG 92 GLN 93 GLY 94 ARG 95 THR 96 LEU 97 TYR 98 GLY 99 PHE 100 GLY 101 GLY 102
Unit 7	THR 16 ARG 17 SER 18 SER 19 ARG 20 ALA 21 GLY 22 LEU 23 GLN 24 PHE 25 PRO 26 VAL 27 GLY 28 ARG 29 VAL 30 HIS 31 ARG 32 LEU 33 LEU 34 ARG 35 LYS 36 GLY 37 ASN 38 TYR 39 SER 40 GLU 41 ARG 42 VAL 43 GLY 44 ALA 45 GLY 46 ALA 47 PRO 48 VAL 49 TYR 50 LEU 51 ALA 52 ALA 53 VAL 54 LEU 55 GLU 56 TYR 57 LEU 58 THR 59 ALA 60 GLU 61 ILE 62 LEU 63 GLU 64 LEU 65 ALA 66 GLY 67 ASN 68 ALA 69 ALA 70 ARG 71 ASP 72 ASN 73 LYS 74 LYS 75 THR 76 ARG 77 ILE 78 ILE 79 PRO 80 ARG 81 HIS 82 LEU 83 GLN 84 LEU 85 ALA 86 ILE 87 ARG 88 ASN 89 ASP 90 GLU 91 GLU 92 LEU 93 ASN 94 LYS 95 LEU 96 LEU 97 GLY 98 ARG 99 VAL 100 THR 101 ILE 102 ALA 103 GLN 104 GLY 105 GLY 106 VAL 107 LEU 108 PRO 109 ASN 110 ILE 111 GLN 112 ALA 113 VAL 114 LEU 115 LEU 116 PRO 117 LYS 118
Unit 8	ARG 29 LYS 30 ARG 31 SER 32 ARG 33 LYS 34 GLU 35 SER 36 TYR 37 SER 38 ILE 39 TYR 40 VAL 41 TYR 42 LYS 43 VAL 44 LEU 45 LYS 46 GLN 47 VAL 48 HIS 49 PRO 50 ASP 51 THR 52 GLY 53 ILE 54 SER 55 SER 56 LYS 57 ALA 58 MET 59 GLY 60 ILE 61 MET 62 ASN 63 SER 64 PHE 65 VAL 66 ASN 67 ASP 68 ILE 69 PHE 70 GLU 71 ARG 72 ILE 73 ALA 74 GLY 75 GLU 76 ALA 77 SER 78 ARG 79 LEU 80 ALA 81 HIS 82 TYR 83 ASN 84 LYS 85 ARG 86 SER 87 THR 88 ILE 89 THR 90 SER 91 ARG 92 GLU 93 ILE 94 GLN 95 THR 96 ALA 97 VAL 98 ARG 99 LEU 100 LEU 101 LEU 102 PRO 103 GLY 104 GLU 105 LEU 106 ALA 107 LYS 108 HIS 109 ALA 110 VAL 111 SER 112 GLU 113 GLY 114 THR 115 LYS 116 ALA 117 VAL 118 THR 119 LYS 120 TYR 121 THR 122 SER 123 ALA 124 LYS 125

Other macromolecules

Unit 9

DA 1 DT 2 DC 3 DA 4 DA 5 DT 6 DA 7 DT 8 DC 9 DC 10 DA 11 DC 12 DC 13 DT 14 DG 15 DC 16 DA 17 DG 18 DA 19 DT 20 DT 21 DC 22 DT 23 DA 24 DC 25 DC 26 DA 27 DA 28 T64 29 DG 30 DT 31 DG 32 DT 33 DA 34 DT 35 DT 36 DT 37 DG 38 DG 39 DA 40 DA 41 DA 42 DC 43 DT 44 DG 45 DC 46 DT 47 DC 48 DC 49 DA 50 DT 51 DC 52 DA 53 DA 54 DA 55 DA 56 DG 57 DG 58 DC 59 DA 60 DT 61 DG 62 DT 63 DT 64 DC 65 DA 66 DG 67 DC 68 DT 69 DG 70 DA 71 DA 72 DC 73 DC 74 DA 75 DG 76 DC 77 DT 78 DG 79 DA 80 DA 81 DC 82 DA 83 DT 84 DG 85 DC 86 DC 87 DT 88 DT 89 DT 90 DT 91 DG 92 DA 93 DT 94 DG 95 DG 96 DA 97 DG 98 DC 99 DA 100 DG 101 DT 102 DT 103 DT 104 DC 105 DC 106 DA 107 DA 108 DA 109 DT 110 DA 111 DC 112 DA 113 DC 114 DA 115 DA 116 DT 117 DT 118 DG 119 DG 120 DT 121 DA 122 DG 123 DA 124 DA 125 DT 126 DC 127 DT 128 DG 129 DC 130 DA 131 DG 132 DG 133 DT 134 DG 135 DG 136 DA 137 DT 138 DA 139 DT 140 DT 141 DG 142 DA 143 DT 144

Unit 10

DA 1 DT 2 DC 3 DA 4 DA 5 DT 6 DA 7 DT 8 DC 9 DC 10 DA 11 DC 12 DC 13 DT 14 DG 15 DC 16 DA 17 DG 18 DA 19 DT 20 DT 21 DC 22 DT 23 DA 24 DC 25 DC 26 DA 27 DA 28 T64 29 DG 30 DT 31 DG 32 DT 33 DA 34 DT 35 DT 36 DT 37 DG 38 DG 39 DA 40 DA 41 DA 42 DC 43 DT 44 DG 45 DC 46 DT 47 DC 48 DC 49 DA 50 DT 51 DC 52 DA 53 DA 54 DA 55 DA 56 DG 57 DG 58 DC 59 DA 60 DT 61 DG 62 DT 63 DT 64 DC 65 DA 66 DG 67 DC 68 DT 69 DG 70 DG 71 DT 72 DT 73 DC 74 DA 75 DG 76 DC 77 DT 78 DG 79 DA 80 DA 81 DC 82 DA 83 DT 84 DG 85 DC 86 DC 87 DT 88 DT 89 DT 90 DT 91 DG 92 DA 93 DT 94 DG 95 DG 96 DA 97 DG 98 DC 99 DA 100 DG 101 DT 102 DT 103 DT 104 DC 105 DC 106 DA 107 DA 108 DA 109 DT 110 DA 111 DC 112 DA 113 DC 114 DA 115 DA 116 DT 117 DT 118 DG 119 DG 120 DT 121 DA 122 DG 123 DA 124 DA 125 DT 126 DC 127 DT 128 DG 129 DC 130 DA 131 DG 132 DG 133 DT 134 DG 135 DG 136 DA 137 DT 138 DA 139 DT 140 DT 141 DG 142 DA 143 DT 144