4YJF - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF DAAO(Y228L/R283G) VARIANT (S-METHYLBENZ BINDING FORM)
• Keywords: AMINE OXIDASE, VARIANT OF D-AMINO ACID OXIDASE, S-METHYLBENZ BINDING FORM, OXIDOREDUCTASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4YJF	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	D-AMINO-ACID OXIDASE	A	341	2724	0
2	Protein	D-AMINO-ACID OXIDASE	B	339	2709	0
3	Ligand	D-AMINO-ACID OXIDASE	A	4	0	72
4	Ligand	D-AMINO-ACID OXIDASE	B	4	0	72
5	Water			54	0	54
total				742	5433	198

Proteins

Unit 1

MET 1 ARG 2 VAL 3 VAL 4 VAL 5 ILE 6 GLY 7 ALA 8 GLY 9 VAL 10 ILE 11 GLY 12 LEU 13 SER 14 THR 15 ALA 16 LEU 17 CYS 18 ILE 19 HIS 20 GLU 21 ARG 22 TYR 23 HIS 24 SER 25 VAL 26 LEU 27 GLN 28 PRO 29 LEU 30 ASP 31 VAL 32 LYS 33 VAL 34 TYR 35 ALA 36 ASP 37 ARG 38 PHE 39 THR 40 PRO 41 PHE 42 THR 43 THR 44 THR 45 ASP 46 VAL 47 ALA 48 ALA 49 GLY 50 LEU 51 TRP 52 GLN 53 PRO 54 TYR 55 THR 56 SER 57 GLU 58 PRO 59 SER 60 ASN 61 PRO 62 GLN 63 GLU 64 ALA 65 ASN 66 TRP 67 ASN 68 GLN 69 GLN 70 THR 71 PHE 72 ASN 73 TYR 74 LEU 75 LEU 76 SER 77 HIS 78 ILE 79 GLY 80 SER 81 PRO 82 ASN 83 ALA 84 ALA 85 ASN 86 MET 87 GLY 88 LEU 89 THR 90 PRO 91 VAL 92 SER 93 GLY 94 TYR 95 ASN 96 LEU 97 PHE 98 ARG 99 GLU 100 ALA 101 VAL 102 PRO 103 ASP 104 PRO 105 TYR 106 TRP 107 LYS 108 ASP 109 MET 110 VAL 111 LEU 112 GLY 113 PHE 114 ARG 115 LYS 116 LEU 117 THR 118 PRO 119 ARG 120 GLU 121 LEU 122 ASP 123 MET 124 PHE 125 PRO 126 ASP 127 TYR 128 ARG 129 TYR 130 GLY 131 TRP 132 PHE 133 ASN 134 THR 135 SER 136 LEU 137 ILE 138 LEU 139 GLU 140 GLY 141 ARG 142 LYS 143 TYR 144 LEU 145 GLN 146 TRP 147 LEU 148 THR 149 GLU 150 ARG 151 LEU 152 THR 153 GLU 154 ARG 155 GLY 156 VAL 157 LYS 158 PHE 159 PHE 160 LEU 161 ARG 162 LYS 163 VAL 164 GLU 165 SER 166 PHE 167 GLU 168 GLU 169 VAL 170 ALA 171 ARG 172 GLY 173 GLY 174 ALA 175 ASP 176 VAL 177 ILE 178 ILE 179 ASN 180 CYS 181 THR 182 GLY 183 VAL 184 TRP 185 ALA 186 GLY 187 VAL 188 LEU 189 GLN 190 PRO 191 ASP 192 PRO 193 LEU 194 LEU 195 GLN 196 PRO 197 GLY 198 ARG 199 GLY 200 GLN 201 ILE 202 ILE 203 LYS 204 VAL 205 ASP 206 ALA 207 PRO 208 TRP 209 LEU 210 LYS 211 ASN 212 PHE 213 ILE 214 ILE 215 THR 216 HIS 217 ASP 218 LEU 219 GLU 220 ARG 221 GLY 222 ILE 223 TYR 224 ASN 225 SER 226 PRO 227 LEU 228 ILE 229 ILE 230 PRO 231 GLY 232 LEU 233 GLN 234 ALA 235 VAL 236 THR 237 LEU 238 GLY 239 GLY 240 THR 241 PHE 242 GLN 243 VAL 244 GLY 245 ASN 246 TRP 247 ASN 248 GLU 249 ILE 250 ASN 251 ASN 252 ILE 253 GLN 254 ASP 255 HIS 256 ASN 257 THR 258 ILE 259 TRP 260 GLU 261 GLY 262 CYS 263 CYS 264 ARG 265 LEU 266 GLU 267 PRO 268 THR 269 LEU 270 LYS 271 ASP 272 ALA 273 LYS 274 ILE 275 VAL 276 GLY 277 GLU 278 TYR 279 THR 280 GLY 281 PHE 282 GLY 283 PRO 284 VAL 285 ARG 286 PRO 287 GLN 288 VAL 289 ARG 290 LEU 291 GLU 292 ARG 293 GLU 294 GLN 295 LEU 296 ARG 297 PHE 298 GLY 299 SER 300 SER 301 ASN 302 THR 303 GLU 304 VAL 305 ILE 306 HIS 307 ASN 308 TYR 309 GLY 310 HIS 311 GLY 312 GLY 313 TYR 314 GLY 315 LEU 316 THR 317 ILE 318 HIS 319 TRP 320 GLY 321 CYS 322 ALA 323 LEU 324 GLU 325 VAL 326 ALA 327 LYS 328 LEU 329 PHE 330 GLY 331 LYS 332 VAL 333 LEU 334 GLU 335 GLU 336 ARG 337 ASN 338 LEU 339 LEU 340 THR 341

Unit 2

MET 1 ARG 2 VAL 3 VAL 4 VAL 5 ILE 6 GLY 7 ALA 8 GLY 9 VAL 10 ILE 11 GLY 12 LEU 13 SER 14 THR 15 ALA 16 LEU 17 CYS 18 ILE 19 HIS 20 GLU 21 ARG 22 TYR 23 HIS 24 SER 25 VAL 26 LEU 27 GLN 28 PRO 29 LEU 30 ASP 31 VAL 32 LYS 33 VAL 34 TYR 35 ALA 36 ASP 37 ARG 38 PHE 39 THR 40 PRO 41 PHE 42 THR 43 THR 44 THR 45 ASP 46 VAL 47 ALA 48 ALA 49 GLY 50 LEU 51 TRP 52 GLN 53 PRO 54 TYR 55 THR 56 SER 57 GLU 58 PRO 59 SER 60 ASN 61 PRO 62 GLN 63 GLU 64 ALA 65 ASN 66 TRP 67 ASN 68 GLN 69 GLN 70 THR 71 PHE 72 ASN 73 TYR 74 LEU 75 LEU 76 SER 77 HIS 78 ILE 79 GLY 80 SER 81 PRO 82 ASN 83 ALA 84 ALA 85 ASN 86 MET 87 GLY 88 LEU 89 THR 90 PRO 91 VAL 92 SER 93 GLY 94 TYR 95 ASN 96 LEU 97 PHE 98 ARG 99 GLU 100 ALA 101 VAL 102 PRO 103 ASP 104 PRO 105 TYR 106 TRP 107 LYS 108 ASP 109 MET 110 VAL 111 LEU 112 GLY 113 PHE 114 ARG 115 LYS 116 LEU 117 THR 118 PRO 119 ARG 120 GLU 121 LEU 122 ASP 123 MET 124 PHE 125 PRO 126 ASP 127 TYR 128 ARG 129 TYR 130 GLY 131 TRP 132 PHE 133 ASN 134 THR 135 SER 136 LEU 137 ILE 138 LEU 139 GLU 140 GLY 141 ARG 142 LYS 143 TYR 144 LEU 145 GLN 146 TRP 147 LEU 148 THR 149 GLU 150 ARG 151 LEU 152 THR 153 GLU 154 ARG 155 GLY 156 VAL 157 LYS 158 PHE 159 PHE 160 LEU 161 ARG 162 LYS 163 VAL 164 GLU 165 SER 166 PHE 167 GLU 168 GLU 169 VAL 170 ALA 171 ARG 172 GLY 173 GLY 174 ALA 175 ASP 176 VAL 177 ILE 178 ILE 179 ASN 180 CYS 181 THR 182 GLY 183 VAL 184 TRP 185 ALA 186 GLY 187 VAL 188 LEU 189 GLN 190 PRO 191 ASP 192 PRO 193 LEU 194 LEU 195 GLN 196 PRO 197 GLY 198 ARG 199 GLY 200 GLN 201 ILE 202 ILE 203 LYS 204 VAL 205 ASP 206 ALA 207 PRO 208 TRP 209 LEU 210 LYS 211 ASN 212 PHE 213 ILE 214 ILE 215 THR 216 HIS 217 ASP 218 LEU 219 GLU 220 ARG 221 GLY 222 ILE 223 TYR 224 ASN 225 SER 226 PRO 227 LEU 228 ILE 229 ILE 230 PRO 231 GLY 232 LEU 233 GLN 234 ALA 235 VAL 236 THR 237 LEU 238 GLY 239 GLY 240 THR 241 PHE 242 GLN 243 VAL 244 GLY 245 ASN 246 TRP 247 ASN 248 GLU 249 ILE 250 ASN 251 ASN 252 ILE 253 GLN 254 ASP 255 HIS 256 ASN 257 THR 258 ILE 259 TRP 260 GLU 261 GLY 262 CYS 263 CYS 264 ARG 265 LEU 266 GLU 267 PRO 268 THR 269 LEU 270 LYS 271 ASP 272 ALA 273 LYS 274 ILE 275 VAL 276 GLY 277 GLU 278 TYR 279 THR 280 GLY 281 PHE 282 GLY 283 PRO 284 VAL 285 ARG 286 PRO 287 GLN 288 VAL 289 ARG 290 LEU 291 GLU 292 ARG 293 GLU 294 GLN 295 LEU 296 ARG 297 PHE 298 GLY 299 SER 300 SER 301 ASN 302 THR 303 GLU 304 VAL 305 ILE 306 HIS 307 ASN 308 TYR 309 GLY 310 HIS 311 GLY 312 GLY 313 TYR 314 GLY 315 LEU 316 THR 317 ILE 318 HIS 319 TRP 320 GLY 321 CYS 322 ALA 323 LEU 324 GLU 325 VAL 326 ALA 327 LYS 328 LEU 329 PHE 330 GLY 331 LYS 332 VAL 333 LEU 334 GLU 335 GLU 336 ARG 337 ASN 338 LEU 339

Ligands

Unit 3	FAD 401 SO4 402 SO4 403 98B 404
Unit 4	FAD 401 SO4 402 SO4 403 98B 404