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Sequence, Chains, Asymmetric and Biological Units

Title VACCINIA VIRUS D4/A20(1-50) IN COMPLEX WITH DSDNA CONTAINING SITE AND FREE URACYL
Keywords URACYL DNA GLYCOSYLASE, DNA COMPLEX, VIRUS REPLICATION, HYDR
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4YIG     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   URACIL-DNA GLYCOSYLASE  A 220 1788 0
2  Protein   DNA POLYMERASE PROCESSIVITY FACTOR COMPONENT A20  B 50 398 0
3  Other macromolecule   DNA (5'-D(*CP*TP*GP*TP*(ORP)P*AP*TP*CP*TP*T)-3')  C 10 178 12
4  Other macromolecule   DNA (5'-D(*AP*AP*GP*AP*TP*AP*AP*CP*AP*G)-3')  D 10 206 0
5  Protein   URACIL-DNA GLYCOSYLASE  E 220 1788 0
6  Protein   DNA POLYMERASE PROCESSIVITY FACTOR COMPONENT A20  F 50 398 0
7  Other macromolecule   DNA (5'-D(*CP*TP*GP*TP*(ORP)P*AP*TP*CP*TP*T)-3')  G 10 178 12
8  Other macromolecule   DNA (5'-D(*AP*AP*GP*AP*TP*AP*AP*CP*AP*G)-3')  H 10 206 0
9  Protein   URACIL-DNA GLYCOSYLASE  I 220 1788 0
10  Protein   DNA POLYMERASE PROCESSIVITY FACTOR COMPONENT A20  J 50 398 0
11  Other macromolecule   DNA (5'-D(*CP*TP*GP*TP*(ORP)P*AP*TP*CP*TP*T)-3')  K 10 178 12
12  Other macromolecule   DNA (5'-D(*AP*AP*GP*AP*TP*AP*AP*CP*AP*G)-3')  L 10 206 0
13  Ligand   URACIL-DNA GLYCOSYLASE  A 1 0 8
14  Ligand   URACIL-DNA GLYCOSYLASE  E 1 0 8
15  Ligand   URACIL-DNA GLYCOSYLASE  I 1 0 8
16 Water     52 0 54
total       925 7710 114
Proteins
Unit 1 ASP-1 PRO0 MET1 ASN2 SER3 VAL4 THR5 VAL6 SER7 HIS8 ALA9 PRO10 TYR11 THR12 ILE13 THR14 TYR15 HIS16 ASP17 ASP18 TRP19 GLU20 PRO21 VAL22 MET23 SER24 GLN25 LEU26 VAL27 GLU28 PHE29 TYR30 ASN31 GLU32 VAL33 ALA34 SER35 TRP36 LEU37 LEU38 ARG39 ASP40 GLU41 THR42 SER43 PRO44 ILE45 PRO46 ASP47 LYS48 PHE49 PHE50 ILE51 GLN52 LEU53 LYS54 GLN55 PRO56 LEU57 ARG58 ASN59 LYS60 ARG61 VAL62 CYS63 VAL64 CYS65 GLY66 ILE67 ASP68 PRO69 TYR70 PRO71 LYS72 ASP73 GLY74 THR75 GLY76 VAL77 PRO78 PHE79 GLU80 SER81 PRO82 ASN83 PHE84 THR85 LYS86 LYS87 SER88 ILE89 LYS90 GLU91 ILE92 ALA93 SER94 SER95 ILE96 SER97 ARG98 LEU99 THR100 GLY101 VAL102 ILE103 ASP104 TYR105 LYS106 GLY107 TYR108 ASN109 LEU110 ASN111 ILE112 ILE113 ASP114 GLY115 VAL116 ILE117 PRO118 TRP119 ASN120 TYR121 TYR122 LEU123 SER124 CYS125 LYS126 LEU127 GLY128 GLU129 THR130 LYS131 SER132 HIS133 ALA134 ILE135 TYR136 TRP137 ASP138 LYS139 ILE140 SER141 LYS142 LEU143 LEU144 LEU145 GLN146 HIS147 ILE148 THR149 LYS150 HIS151 VAL152 SER153 VAL154 LEU155 TYR156 CYS157 LEU158 GLY159 LYS160 THR161 ASP162 PHE163 SER164 ASN165 ILE166 ARG167 ALA168 LYS169 LEU170 GLU171 SER172 PRO173 VAL174 THR175 THR176 ILE177 VAL178 GLY179 TYR180 HIS181 PRO182 ALA183 ALA184 ARG185 ASP186 ARG187 GLN188 PHE189 GLU190 LYS191 ASP192 ARG193 SER194 PHE195 GLU196 ILE197 ILE198 ASN199 VAL200 LEU201 LEU202 GLU203 LEU204 ASP205 ASN206 LYS207 VAL208 PRO209 ILE210 ASN211 TRP212 ALA213 GLN214 GLY215 PHE216 ILE217 TYR218
Unit 2 MET1 ALA2 SER3 SER4 ALA5 ASP6 LEU7 THR8 ASN9 LEU10 LYS11 GLU12 LEU13 LEU14 SER15 LEU16 TYR17 LYS18 SER19 LEU20 ARG21 PHE22 SER23 ASP24 SER25 ALA26 ALA27 ILE28 GLU29 LYS30 TYR31 ASN32 SER33 LEU34 VAL35 GLU36 TRP37 GLY38 THR39 SER40 THR41 TYR42 TRP43 LYS44 ILE45 GLY46 VAL47 GLN48 LYS49 VAL50
Unit 5 ASP-1 PRO0 MET1 ASN2 SER3 VAL4 THR5 VAL6 SER7 HIS8 ALA9 PRO10 TYR11 THR12 ILE13 THR14 TYR15 HIS16 ASP17 ASP18 TRP19 GLU20 PRO21 VAL22 MET23 SER24 GLN25 LEU26 VAL27 GLU28 PHE29 TYR30 ASN31 GLU32 VAL33 ALA34 SER35 TRP36 LEU37 LEU38 ARG39 ASP40 GLU41 THR42 SER43 PRO44 ILE45 PRO46 ASP47 LYS48 PHE49 PHE50 ILE51 GLN52 LEU53 LYS54 GLN55 PRO56 LEU57 ARG58 ASN59 LYS60 ARG61 VAL62 CYS63 VAL64 CYS65 GLY66 ILE67 ASP68 PRO69 TYR70 PRO71 LYS72 ASP73 GLY74 THR75 GLY76 VAL77 PRO78 PHE79 GLU80 SER81 PRO82 ASN83 PHE84 THR85 LYS86 LYS87 SER88 ILE89 LYS90 GLU91 ILE92 ALA93 SER94 SER95 ILE96 SER97 ARG98 LEU99 THR100 GLY101 VAL102 ILE103 ASP104 TYR105 LYS106 GLY107 TYR108 ASN109 LEU110 ASN111 ILE112 ILE113 ASP114 GLY115 VAL116 ILE117 PRO118 TRP119 ASN120 TYR121 TYR122 LEU123 SER124 CYS125 LYS126 LEU127 GLY128 GLU129 THR130 LYS131 SER132 HIS133 ALA134 ILE135 TYR136 TRP137 ASP138 LYS139 ILE140 SER141 LYS142 LEU143 LEU144 LEU145 GLN146 HIS147 ILE148 THR149 LYS150 HIS151 VAL152 SER153 VAL154 LEU155 TYR156 CYS157 LEU158 GLY159 LYS160 THR161 ASP162 PHE163 SER164 ASN165 ILE166 ARG167 ALA168 LYS169 LEU170 GLU171 SER172 PRO173 VAL174 THR175 THR176 ILE177 VAL178 GLY179 TYR180 HIS181 PRO182 ALA183 ALA184 ARG185 ASP186 ARG187 GLN188 PHE189 GLU190 LYS191 ASP192 ARG193 SER194 PHE195 GLU196 ILE197 ILE198 ASN199 VAL200 LEU201 LEU202 GLU203 LEU204 ASP205 ASN206 LYS207 VAL208 PRO209 ILE210 ASN211 TRP212 ALA213 GLN214 GLY215 PHE216 ILE217 TYR218
Unit 6 MET1 ALA2 SER3 SER4 ALA5 ASP6 LEU7 THR8 ASN9 LEU10 LYS11 GLU12 LEU13 LEU14 SER15 LEU16 TYR17 LYS18 SER19 LEU20 ARG21 PHE22 SER23 ASP24 SER25 ALA26 ALA27 ILE28 GLU29 LYS30 TYR31 ASN32 SER33 LEU34 VAL35 GLU36 TRP37 GLY38 THR39 SER40 THR41 TYR42 TRP43 LYS44 ILE45 GLY46 VAL47 GLN48 LYS49 VAL50
Unit 9 ASP-1 PRO0 MET1 ASN2 SER3 VAL4 THR5 VAL6 SER7 HIS8 ALA9 PRO10 TYR11 THR12 ILE13 THR14 TYR15 HIS16 ASP17 ASP18 TRP19 GLU20 PRO21 VAL22 MET23 SER24 GLN25 LEU26 VAL27 GLU28 PHE29 TYR30 ASN31 GLU32 VAL33 ALA34 SER35 TRP36 LEU37 LEU38 ARG39 ASP40 GLU41 THR42 SER43 PRO44 ILE45 PRO46 ASP47 LYS48 PHE49 PHE50 ILE51 GLN52 LEU53 LYS54 GLN55 PRO56 LEU57 ARG58 ASN59 LYS60 ARG61 VAL62 CYS63 VAL64 CYS65 GLY66 ILE67 ASP68 PRO69 TYR70 PRO71 LYS72 ASP73 GLY74 THR75 GLY76 VAL77 PRO78 PHE79 GLU80 SER81 PRO82 ASN83 PHE84 THR85 LYS86 LYS87 SER88 ILE89 LYS90 GLU91 ILE92 ALA93 SER94 SER95 ILE96 SER97 ARG98 LEU99 THR100 GLY101 VAL102 ILE103 ASP104 TYR105 LYS106 GLY107 TYR108 ASN109 LEU110 ASN111 ILE112 ILE113 ASP114 GLY115 VAL116 ILE117 PRO118 TRP119 ASN120 TYR121 TYR122 LEU123 SER124 CYS125 LYS126 LEU127 GLY128 GLU129 THR130 LYS131 SER132 HIS133 ALA134 ILE135 TYR136 TRP137 ASP138 LYS139 ILE140 SER141 LYS142 LEU143 LEU144 LEU145 GLN146 HIS147 ILE148 THR149 LYS150 HIS151 VAL152 SER153 VAL154 LEU155 TYR156 CYS157 LEU158 GLY159 LYS160 THR161 ASP162 PHE163 SER164 ASN165 ILE166 ARG167 ALA168 LYS169 LEU170 GLU171 SER172 PRO173 VAL174 THR175 THR176 ILE177 VAL178 GLY179 TYR180 HIS181 PRO182 ALA183 ALA184 ARG185 ASP186 ARG187 GLN188 PHE189 GLU190 LYS191 ASP192 ARG193 SER194 PHE195 GLU196 ILE197 ILE198 ASN199 VAL200 LEU201 LEU202 GLU203 LEU204 ASP205 ASN206 LYS207 VAL208 PRO209 ILE210 ASN211 TRP212 ALA213 GLN214 GLY215 PHE216 ILE217 TYR218
Unit 10 MET1 ALA2 SER3 SER4 ALA5 ASP6 LEU7 THR8 ASN9 LEU10 LYS11 GLU12 LEU13 LEU14 SER15 LEU16 TYR17 LYS18 SER19 LEU20 ARG21 PHE22 SER23 ASP24 SER25 ALA26 ALA27 ILE28 GLU29 LYS30 TYR31 ASN32 SER33 LEU34 VAL35 GLU36 TRP37 GLY38 THR39 SER40 THR41 TYR42 TRP43 LYS44 ILE45 GLY46 VAL47 GLN48 LYS49 VAL50
Other macromolecules
Unit 3 DC1 DT2 DG3 DT4 ORP5 DA6 DT7 DC8 DT9 DT10
Unit 4 DA22 DA23 DG24 DA25 DT26 DA27 DA28 DC29 DA30 DG31
Unit 7 DC1 DT2 DG3 DT4 ORP5 DA6 DT7 DC8 DT9 DT10
Unit 8 DA22 DA23 DG24 DA25 DT26 DA27 DA28 DC29 DA30 DG31
Unit 11 DC1 DT2 DG3 DT4 ORP5 DA6 DT7 DC8 DT9 DT10
Unit 12 DA22 DA23 DG24 DA25 DT26 DA27 DA28 DC29 DA30 DG31
Ligands
Unit 13 URA301
Unit 14 URA301
Unit 15 URA301
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany