4YEF - Sequence, Chains, Asymmetric and Biological Units

• Title: BETA1 CARBOHYDRATE BINDING MODULE (CBM) OF AMP-ACTIVATED PRO KINASE (AMPK) IN COMPLEX WITH GLUCOSYL-BETA-CYCLODODEXTRIN
• Keywords: CARBOHYDRATE BINDING MODULE, CBM, AMPK, AMP-ACTIVATED PROTEI CYCLODEXTRIN, SUGAR BINDING PROTEIN
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4YEF	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-1	A	80	642	0
2	Protein	5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-1	B	86	682	0
3	Protein	5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-1	C	79	631	0
4	Protein	5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-1	D	77	597	0
5	Protein	5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-1	E	85	680	0
6	Protein	5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-1	F	77	596	0
7	Protein	5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-1	G	74	570	0
8	Ligand		H	7	0	77
9	Ligand		I	7	0	77
10	Ligand		J	7	0	77
11	Ligand		K	7	0	77
12	Ligand		L	7	0	77
13	Ligand		M	7	0	77
14	Ligand		N	7	0	77
15	Ligand	5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-1	A	1	0	6
16	Ligand	5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-1	B	2	0	10
17	Ligand	5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-1	C	1	0	6
18	Ligand	5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-1	D	1	0	5
19	Ligand	5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-1	E	2	0	10
20	Ligand	5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-1	F	1	0	5
21	Protein	5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-1	G	1	0	5
22	Water			684	0	684
total				1300	4398	1270

Proteins

Unit 1	ALA 77 ARG 78 PRO 79 THR 80 VAL 81 PHE 82 ARG 83 TRP 84 THR 85 GLY 86 GLY 87 GLY 88 LYS 89 GLU 90 VAL 91 TYR 92 LEU 93 SER 94 GLY 95 SER 96 PHE 97 ASN 98 ASN 99 TRP 100 SER 101 LYS 102 LEU 103 PRO 104 LEU 105 THR 106 ARG 107 SER 108 GLN 109 ASN 110 ASN 111 PHE 112 VAL 113 ALA 114 ILE 115 LEU 116 ASP 117 LEU 118 PRO 119 GLU 120 GLY 121 GLU 122 HIS 123 GLN 124 TYR 125 LYS 126 PHE 127 PHE 128 VAL 129 ASP 130 GLY 131 GLN 132 TRP 133 THR 134 HIS 135 ASP 136 PRO 137 SER 138 GLU 139 PRO 140 ILE 141 VAL 142 THR 143 SER 144 GLN 145 LEU 146 GLY 147 THR 148 VAL 149 ASN 150 ASN 151 ILE 152 ILE 153 GLN 154 VAL 155 LYS 156
Unit 2	GLY 71 SER 72 PRO 73 ASN 74 SER 75 GLN 76 ALA 77 ARG 78 PRO 79 THR 80 VAL 81 PHE 82 ARG 83 TRP 84 THR 85 GLY 86 GLY 87 GLY 88 LYS 89 GLU 90 VAL 91 TYR 92 LEU 93 SER 94 GLY 95 SER 96 PHE 97 ASN 98 ASN 99 TRP 100 SER 101 LYS 102 LEU 103 PRO 104 LEU 105 THR 106 ARG 107 SER 108 GLN 109 ASN 110 ASN 111 PHE 112 VAL 113 ALA 114 ILE 115 LEU 116 ASP 117 LEU 118 PRO 119 GLU 120 GLY 121 GLU 122 HIS 123 GLN 124 TYR 125 LYS 126 PHE 127 PHE 128 VAL 129 ASP 130 GLY 131 GLN 132 TRP 133 THR 134 HIS 135 ASP 136 PRO 137 SER 138 GLU 139 PRO 140 ILE 141 VAL 142 THR 143 SER 144 GLN 145 LEU 146 GLY 147 THR 148 VAL 149 ASN 150 ASN 151 ILE 152 ILE 153 GLN 154 VAL 155 LYS 156
Unit 3	ARG 78 PRO 79 THR 80 VAL 81 PHE 82 ARG 83 TRP 84 THR 85 GLY 86 GLY 87 GLY 88 LYS 89 GLU 90 VAL 91 TYR 92 LEU 93 SER 94 GLY 95 SER 96 PHE 97 ASN 98 ASN 99 TRP 100 SER 101 LYS 102 LEU 103 PRO 104 LEU 105 THR 106 ARG 107 SER 108 GLN 109 ASN 110 ASN 111 PHE 112 VAL 113 ALA 114 ILE 115 LEU 116 ASP 117 LEU 118 PRO 119 GLU 120 GLY 121 GLU 122 HIS 123 GLN 124 TYR 125 LYS 126 PHE 127 PHE 128 VAL 129 ASP 130 GLY 131 GLN 132 TRP 133 THR 134 HIS 135 ASP 136 PRO 137 SER 138 GLU 139 PRO 140 ILE 141 VAL 142 THR 143 SER 144 GLN 145 LEU 146 GLY 147 THR 148 VAL 149 ASN 150 ASN 151 ILE 152 ILE 153 GLN 154 VAL 155 LYS 156
Unit 4	PRO 79 THR 80 VAL 81 PHE 82 ARG 83 TRP 84 THR 85 GLY 86 GLY 87 GLY 88 LYS 89 GLU 90 VAL 91 TYR 92 LEU 93 SER 94 GLY 95 SER 96 PHE 97 ASN 98 ASN 99 TRP 100 SER 101 LYS 102 LEU 103 PRO 104 LEU 105 THR 106 ARG 107 SER 108 GLN 109 ASN 110 ASN 111 PHE 112 VAL 113 ALA 114 ILE 115 LEU 116 ASP 117 LEU 118 PRO 119 GLU 120 GLY 121 GLU 122 HIS 123 GLN 124 TYR 125 LYS 126 PHE 127 PHE 128 VAL 129 ASP 130 GLY 131 GLN 132 TRP 133 THR 134 HIS 135 ASP 136 PRO 137 SER 138 GLU 139 PRO 140 ILE 141 VAL 142 THR 143 SER 144 GLN 145 LEU 146 GLY 147 THR 148 VAL 149 ASN 150 ASN 151 ILE 152 ILE 153 GLN 154 VAL 155
Unit 5	SER 72 PRO 73 ASN 74 SER 75 GLN 76 ALA 77 ARG 78 PRO 79 THR 80 VAL 81 PHE 82 ARG 83 TRP 84 THR 85 GLY 86 GLY 87 GLY 88 LYS 89 GLU 90 VAL 91 TYR 92 LEU 93 SER 94 GLY 95 SER 96 PHE 97 ASN 98 ASN 99 TRP 100 SER 101 LYS 102 LEU 103 PRO 104 LEU 105 THR 106 ARG 107 SER 108 GLN 109 ASN 110 ASN 111 PHE 112 VAL 113 ALA 114 ILE 115 LEU 116 ASP 117 LEU 118 PRO 119 GLU 120 GLY 121 GLU 122 HIS 123 GLN 124 TYR 125 LYS 126 PHE 127 PHE 128 VAL 129 ASP 130 GLY 131 GLN 132 TRP 133 THR 134 HIS 135 ASP 136 PRO 137 SER 138 GLU 139 PRO 140 ILE 141 VAL 142 THR 143 SER 144 GLN 145 LEU 146 GLY 147 THR 148 VAL 149 ASN 150 ASN 151 ILE 152 ILE 153 GLN 154 VAL 155 LYS 156
Unit 6	PRO 79 THR 80 VAL 81 PHE 82 ARG 83 TRP 84 THR 85 GLY 86 GLY 87 GLY 88 LYS 89 GLU 90 VAL 91 TYR 92 LEU 93 SER 94 GLY 95 SER 96 PHE 97 ASN 98 ASN 99 TRP 100 SER 101 LYS 102 LEU 103 PRO 104 LEU 105 THR 106 ARG 107 SER 108 GLN 109 ASN 110 ASN 111 PHE 112 VAL 113 ALA 114 ILE 115 LEU 116 ASP 117 LEU 118 PRO 119 GLU 120 GLY 121 GLU 122 HIS 123 GLN 124 TYR 125 LYS 126 PHE 127 PHE 128 VAL 129 ASP 130 GLY 131 GLN 132 TRP 133 THR 134 HIS 135 ASP 136 PRO 137 SER 138 GLU 139 PRO 140 ILE 141 VAL 142 THR 143 SER 144 GLN 145 LEU 146 GLY 147 THR 148 VAL 149 ASN 150 ASN 151 ILE 152 ILE 153 GLN 154 VAL 155
Unit 7	PRO 79 THR 80 VAL 81 PHE 82 ARG 83 TRP 84 THR 85 GLY 86 GLY 87 GLY 88 LYS 89 GLU 90 VAL 91 TYR 92 LEU 93 SER 94 GLY 95 SER 96 PHE 97 ASN 98 ASN 99 TRP 100 SER 101 LYS 102 LEU 103 PRO 104 LEU 105 THR 106 ARG 107 SER 108 GLN 109 ASN 110 ASN 111 PHE 112 VAL 113 ALA 114 ILE 115 LEU 116 ASP 117 LEU 118 PRO 119 GLU 120 GLY 121 HIS 123 GLN 124 TYR 125 LYS 126 PHE 127 PHE 128 VAL 129 ASP 130 GLY 131 GLN 132 TRP 133 THR 134 HIS 135 ASP 136 PRO 137 SER 138 GLU 139 PRO 140 ILE 141 VAL 142 THR 143 SER 144 GLN 145 LEU 146 GLY 147 THR 148 VAL 149 ASN 150 ASN 151 ILE 152 ILE 153
Unit 21	GLU 201

Ligands

Unit 8	GLC 1 GLC 2 GLC 3 GLC 4 GLC 5 GLC 6 GLC 7
Unit 9	GLC 1 GLC 2 GLC 3 GLC 4 GLC 5 GLC 6 GLC 7
Unit 10	GLC 1 GLC 2 GLC 3 GLC 4 GLC 5 GLC 6 GLC 7
Unit 11	GLC 1 GLC 2 GLC 3 GLC 4 GLC 5 GLC 6 GLC 7
Unit 12	GLC 1 GLC 2 GLC 3 GLC 4 GLC 5 GLC 6 GLC 7
Unit 13	GLC 1 GLC 2 GLC 3 GLC 4 GLC 5 GLC 6 GLC 7
Unit 14	GLC 1 GLC 2 GLC 3 GLC 4 GLC 5 GLC 6 GLC 7
Unit 15	GOL 202
Unit 16	SO4 202 SO4 203
Unit 17	GOL 202
Unit 18	SO4 202
Unit 19	SO4 202 SO4 203
Unit 20	SO4 202