4YD1 - Sequence, Chains, Asymmetric and Biological Units

• Title: TERNARY COMPLEX OF HUMAN DNA POLYMERASE MU WITH 2-NT GAPPED SUBSTRATE AND AN INCOMING NONHYDROLYZABLE DUMPNPP
• Keywords: POLYMERASE, DNA REPAIR, NHEJ, TRANSFERASE-DNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4YD1	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	DNA-DIRECTED DNA/RNA POLYMERASE MU	A	334	2612	0
2	Other macromolecule	DNA (5'-D(*CP*GP*GP*CP*AP*AP*TP*AP*CP*G)-3')	T	10	203	0
3	Other macromolecule	DNA (5'-D(*CP*GP*TP*A)-3')	P	4	79	0
4	Other macromolecule	DNA (5'-D(P*GP*CP*CP*G)-3')	D	4	83	0
5	Ligand	DNA-DIRECTED DNA/RNA POLYMERASE MU	A	12	0	55
6	Ligand	DNA (5'-D(*CP*GP*GP*CP*AP*AP*TP*AP*CP*G)-3')	T	1	0	1
7	Water			468	0	468
total				833	2977	524

Proteins

Unit 1

MET 138 PRO 139 ALA 140 TYR 141 ALA 142 CYS 143 GLN 144 ARG 145 PRO 146 THR 147 PRO 148 LEU 149 THR 150 HIS 151 HIS 152 ASN 153 THR 154 GLY 155 LEU 156 SER 157 GLU 158 ALA 159 LEU 160 GLU 161 ILE 162 LEU 163 ALA 164 GLU 165 ALA 166 ALA 167 GLY 168 PHE 169 GLU 170 GLY 171 SER 172 GLU 173 GLY 174 ARG 175 LEU 176 LEU 177 THR 178 PHE 179 CYS 180 ARG 181 ALA 182 ALA 183 SER 184 VAL 185 LEU 186 LYS 187 ALA 188 LEU 189 PRO 190 SER 191 PRO 192 VAL 193 THR 194 THR 195 LEU 196 SER 197 GLN 198 LEU 199 GLN 200 GLY 201 LEU 202 PRO 203 HIS 204 PHE 205 GLY 206 GLU 207 HIS 208 SER 209 SER 210 ARG 211 VAL 212 VAL 213 GLN 214 GLU 215 LEU 216 LEU 217 GLU 218 HIS 219 GLY 220 VAL 221 CYS 222 GLU 223 GLU 224 VAL 225 GLU 226 ARG 227 VAL 228 ARG 229 ARG 230 SER 231 GLU 232 ARG 233 TYR 234 GLN 235 THR 236 MET 237 LYS 238 LEU 239 PHE 240 THR 241 GLN 242 ILE 243 PHE 244 GLY 245 VAL 246 GLY 247 VAL 248 LYS 249 THR 250 ALA 251 ASP 252 ARG 253 TRP 254 TYR 255 ARG 256 GLU 257 GLY 258 LEU 259 ARG 260 THR 261 LEU 262 ASP 263 ASP 264 LEU 265 ARG 266 GLU 267 GLN 268 PRO 269 GLN 270 LYS 271 LEU 272 THR 273 GLN 274 GLN 275 GLN 276 LYS 277 ALA 278 GLY 279 LEU 280 GLN 281 HIS 282 HIS 283 GLN 284 ASP 285 LEU 286 SER 287 THR 288 PRO 289 VAL 290 LEU 291 ARG 292 SER 293 ASP 294 VAL 295 ASP 296 ALA 297 LEU 298 GLN 299 GLN 300 VAL 301 VAL 302 GLU 303 GLU 304 ALA 305 VAL 306 GLY 307 GLN 308 ALA 309 LEU 310 PRO 311 GLY 312 ALA 313 THR 314 VAL 315 THR 316 LEU 317 THR 318 GLY 319 GLY 320 PHE 321 ARG 322 ARG 323 GLY 324 LYS 325 LEU 326 GLN 327 GLY 328 HIS 329 ASP 330 VAL 331 ASP 332 PHE 333 LEU 334 ILE 335 THR 336 HIS 337 PRO 338 LYS 339 GLU 340 GLY 341 GLN 342 GLU 343 ALA 344 GLY 345 LEU 346 LEU 347 PRO 348 ARG 349 VAL 350 MET 351 CYS 352 ARG 353 LEU 354 GLN 355 ASP 356 GLN 357 GLY 358 LEU 359 ILE 360 LEU 361 TYR 362 HIS 363 GLN 364 HIS 365 GLN 366 HIS 367 SER 368 CYS 369 HIS 381 MET 382 ASP 383 ALA 384 PHE 385 GLU 386 ARG 387 SER 388 PHE 389 CYS 390 ILE 391 PHE 392 ARG 393 LEU 394 PRO 395 GLN 396 PRO 397 GLY 410 SER 411 TRP 412 LYS 413 ALA 414 VAL 415 ARG 416 VAL 417 ASP 418 LEU 419 VAL 420 VAL 421 ALA 422 PRO 423 VAL 424 SER 425 GLN 426 PHE 427 PRO 428 PHE 429 ALA 430 LEU 431 LEU 432 GLY 433 TRP 434 THR 435 GLY 436 SER 437 LYS 438 LEU 439 PHE 440 GLN 441 ARG 442 GLU 443 LEU 444 ARG 445 ARG 446 PHE 447 SER 448 ARG 449 LYS 450 GLU 451 LYS 452 GLY 453 LEU 454 TRP 455 LEU 456 ASN 457 SER 458 HIS 459 GLY 460 LEU 461 PHE 462 ASP 463 PRO 464 GLU 465 GLN 466 LYS 467 THR 468 PHE 469 PHE 470 GLN 471 ALA 472 ALA 473 SER 474 GLU 475 GLU 476 ASP 477 ILE 478 PHE 479 ARG 480 HIS 481 LEU 482 GLY 483 LEU 484 GLU 485 TYR 486 LEU 487 PRO 488 PRO 489 GLU 490 GLN 491 ARG 492 ASN 493 ALA 494

Other macromolecules

Unit 2	DC 1 DG 2 DG 3 DC 4 DA 5 DA 6 DT 7 DA 8 DC 9 DG 10
Unit 3	DC 1 DG 2 DT 3 DA 4
Unit 4	DG 1 DC 2 DC 3 DG 4

Ligands

Unit 5	MG 601 MG 602 EDO 603 GOL 604 GOL 605 EDO 606 DUP 607 CL 608 CL 609 CL 610 CL 611 NA 612
Unit 6	MG 101