4YCO - Sequence, Chains, Asymmetric and Biological Units

• Title: E. COLI DIHYDROURIDINE SYNTHASE C (DUSC) IN COMPLEX WITH TRN
• Keywords: TRNA MODIFICATION, OXIDOREDUCTASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4YCO	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	TRNA-DIHYDROURIDINE SYNTHASE C	A	311	2421	0
2	Protein	TRNA-DIHYDROURIDINE SYNTHASE C	B	309	2411	0
3	Protein	TRNA-DIHYDROURIDINE SYNTHASE C	C	311	2425	0
4	RNA		D	74	1581	0
5	RNA		E	67	1433	0
6	RNA		F	71	1519	0
7	Ligand	TRNA-DIHYDROURIDINE SYNTHASE C	A	1	0	31
8	Ligand	TRNA-DIHYDROURIDINE SYNTHASE C	B	2	0	32
9	Ligand	TRNA-DIHYDROURIDINE SYNTHASE C	C	1	0	31
10	Ligand	TRNAPHE	D	9	0	9
11	Ligand	TRNAPHE	E	9	0	9
12	Ligand	TRNAPHE	F	9	0	9
13	Water			614	0	614
total				1788	11790	735

Proteins

Unit 1	SER 0 MET 1 ARG 2 VAL 3 LEU 4 LEU 5 ALA 6 PRO 7 MET 8 GLU 9 GLY 10 VAL 11 LEU 12 ASP 13 SER 14 LEU 15 VAL 16 ARG 17 GLU 18 LEU 19 LEU 20 THR 21 GLU 22 VAL 23 ASN 24 ASP 25 TYR 26 ASP 27 LEU 28 CYS 29 ILE 30 THR 31 GLU 32 PHE 33 VAL 34 ARG 35 VAL 36 VAL 37 ASP 38 GLN 39 LEU 40 LEU 41 PRO 42 VAL 43 LYS 44 VAL 45 PHE 46 HIS 47 ARG 48 ILE 49 CYS 50 PRO 51 GLU 52 LEU 53 GLN 54 ASN 55 ALA 56 SER 57 ARG 58 THR 59 PRO 60 SER 61 GLY 62 THR 63 LEU 64 VAL 65 ARG 66 VAL 67 GLN 68 LEU 69 LEU 70 GLY 71 GLN 72 PHE 73 PRO 74 GLN 75 TRP 76 LEU 77 ALA 78 GLU 79 ASN 80 ALA 81 ALA 82 ARG 83 ALA 84 VAL 85 GLU 86 LEU 87 GLY 88 SER 89 TRP 90 GLY 91 VAL 92 ASP 93 LEU 94 ASN 95 CYS 96 GLY 97 ALA 98 PRO 99 SER 100 GLY 105 SER 106 GLY 107 GLY 108 GLY 109 ALA 110 THR 111 LEU 112 LEU 113 LYS 114 ASP 115 PRO 116 GLU 117 LEU 118 ILE 119 TYR 120 GLN 121 GLY 122 ALA 123 LYS 124 ALA 125 MET 126 ARG 127 GLU 128 ALA 129 VAL 130 PRO 131 ALA 132 HIS 133 LEU 134 PRO 135 VAL 136 SER 137 VAL 138 LYS 139 VAL 140 ARG 141 LEU 142 GLY 143 TRP 144 ASP 145 SER 146 GLY 147 GLU 148 LYS 149 LYS 150 PHE 151 GLU 152 ILE 153 ALA 154 ASP 155 ALA 156 VAL 157 GLN 158 GLN 159 ALA 160 GLY 161 ALA 162 THR 163 GLU 164 LEU 165 VAL 166 VAL 167 HIS 168 GLY 169 ARG 170 THR 171 LYS 172 GLU 173 GLN 174 GLY 175 TYR 176 ARG 177 ALA 178 GLU 179 HIS 180 ILE 181 ASP 182 TRP 183 GLN 184 ALA 185 ILE 186 GLY 187 ASP 188 ILE 189 ARG 190 GLN 191 ARG 192 LEU 193 ASN 194 ILE 195 PRO 196 VAL 197 ILE 198 ALA 199 ASN 200 GLY 201 GLU 202 ILE 203 TRP 204 ASP 205 TRP 206 GLN 207 SER 208 ALA 209 GLN 210 GLN 211 CYS 212 MET 213 ALA 214 ILE 215 SER 216 GLY 217 CYS 218 ASP 219 ALA 220 VAL 221 MET 222 ILE 223 GLY 224 ARG 225 GLY 226 ALA 227 LEU 228 ASN 229 ILE 230 PRO 231 ASN 232 LEU 233 SER 234 ARG 235 VAL 236 VAL 237 LYS 238 TYR 239 ASN 240 GLU 241 PRO 242 ARG 243 MET 244 PRO 245 TRP 246 PRO 247 GLU 248 VAL 249 VAL 250 ALA 251 LEU 252 LEU 253 GLN 254 LYS 255 TYR 256 THR 257 ARG 258 LEU 259 GLU 260 LYS 261 GLN 262 GLY 263 ASP 264 THR 265 GLY 266 LEU 267 TYR 268 HIS 269 VAL 270 ALA 271 ARG 272 ILE 273 LYS 274 GLN 275 TRP 276 LEU 277 SER 278 TYR 279 LEU 280 ARG 281 LYS 282 GLU 283 TYR 284 ASP 285 GLU 286 ALA 287 THR 288 GLU 289 LEU 290 PHE 291 GLN 292 HIS 293 VAL 294 ARG 295 VAL 296 LEU 297 ASN 298 ASN 299 SER 300 PRO 301 ASP 302 ILE 303 ALA 304 ARG 305 ALA 306 ILE 307 GLN 308 ALA 309 ILE 310 ASP 311 ILE 312 GLU 313 LYS 314
Unit 2	SER 0 MET 1 ARG 2 VAL 3 LEU 4 LEU 5 ALA 6 PRO 7 MET 8 GLU 9 GLY 10 VAL 11 LEU 12 ASP 13 SER 14 LEU 15 VAL 16 ARG 17 GLU 18 LEU 19 LEU 20 THR 21 GLU 22 VAL 23 ASN 24 ASP 25 TYR 26 ASP 27 LEU 28 CYS 29 ILE 30 THR 31 GLU 32 PHE 33 VAL 34 ARG 35 VAL 36 VAL 37 ASP 38 GLN 39 LEU 40 LEU 41 PRO 42 VAL 43 LYS 44 VAL 45 PHE 46 HIS 47 ARG 48 ILE 49 CYS 50 PRO 51 GLU 52 LEU 53 GLN 54 ASN 55 ALA 56 SER 57 ARG 58 THR 59 PRO 60 SER 61 GLY 62 THR 63 LEU 64 VAL 65 ARG 66 VAL 67 GLN 68 LEU 69 LEU 70 GLY 71 GLN 72 PHE 73 PRO 74 GLN 75 TRP 76 LEU 77 ALA 78 GLU 79 ASN 80 ALA 81 ALA 82 ARG 83 ALA 84 VAL 85 GLU 86 LEU 87 GLY 88 SER 89 TRP 90 GLY 91 VAL 92 ASP 93 LEU 94 ASN 95 CYS 96 GLY 97 ALA 98 PRO 99 SER 100 GLY 105 SER 106 GLY 107 GLY 108 GLY 109 ALA 110 THR 111 LEU 112 LEU 113 LYS 114 ASP 115 PRO 116 GLU 117 LEU 118 ILE 119 TYR 120 GLN 121 GLY 122 ALA 123 LYS 124 ALA 125 MET 126 ARG 127 GLU 128 ALA 129 VAL 130 PRO 131 ALA 132 HIS 133 LEU 134 PRO 135 VAL 136 SER 137 VAL 138 LYS 139 VAL 140 ARG 141 LEU 142 GLY 143 TRP 144 ASP 145 SER 146 GLY 147 GLU 148 LYS 149 LYS 150 PHE 151 GLU 152 ILE 153 ALA 154 ASP 155 ALA 156 VAL 157 GLN 158 GLN 159 ALA 160 GLY 161 ALA 162 THR 163 GLU 164 LEU 165 VAL 166 VAL 167 HIS 168 GLY 169 ARG 170 THR 171 LYS 172 GLU 173 GLN 174 GLY 175 TYR 176 ARG 177 ALA 178 GLU 179 HIS 180 ILE 181 ASP 182 TRP 183 GLN 184 ALA 185 ILE 186 GLY 187 ASP 188 ILE 189 ARG 190 GLN 191 ARG 192 LEU 193 ASN 194 ILE 195 PRO 196 VAL 197 ILE 198 ALA 199 ASN 200 GLY 201 GLU 202 ILE 203 TRP 204 ASP 205 TRP 206 GLN 207 SER 208 ALA 209 GLN 210 GLN 211 CYS 212 MET 213 ALA 214 ILE 215 SER 216 GLY 217 CYS 218 ASP 219 ALA 220 VAL 221 MET 222 ILE 223 GLY 224 ARG 225 GLY 226 ALA 227 LEU 228 ASN 229 ILE 230 PRO 231 ASN 232 LEU 233 SER 234 ARG 235 VAL 236 VAL 237 LYS 238 TYR 239 ASN 240 GLU 241 PRO 242 ARG 243 MET 244 PRO 245 TRP 246 PRO 247 GLU 248 VAL 249 VAL 250 ALA 251 LEU 252 LEU 253 GLN 254 LYS 255 TYR 256 THR 257 ARG 258 LEU 259 GLU 260 LYS 261 GLN 262 GLY 263 ASP 264 THR 265 GLY 266 LEU 267 TYR 268 HIS 269 VAL 270 ALA 271 ARG 272 ILE 273 LYS 274 GLN 275 TRP 276 LEU 277 SER 278 TYR 279 LEU 280 ARG 281 LYS 282 GLU 283 TYR 284 ASP 285 GLU 286 ALA 287 THR 288 GLU 289 LEU 290 PHE 291 GLN 292 HIS 293 VAL 294 ARG 295 VAL 296 LEU 297 ASN 298 ASN 299 SER 300 PRO 301 ASP 302 ILE 303 ALA 304 ARG 305 ALA 306 ILE 307 GLN 308 ALA 309 ILE 310 ASP 311 ILE 312
Unit 3	SER 0 MET 1 ARG 2 VAL 3 LEU 4 LEU 5 ALA 6 PRO 7 MET 8 GLU 9 GLY 10 VAL 11 LEU 12 ASP 13 SER 14 LEU 15 VAL 16 ARG 17 GLU 18 LEU 19 LEU 20 THR 21 GLU 22 VAL 23 ASN 24 ASP 25 TYR 26 ASP 27 LEU 28 CYS 29 ILE 30 THR 31 GLU 32 PHE 33 VAL 34 ARG 35 VAL 36 VAL 37 ASP 38 GLN 39 LEU 40 LEU 41 PRO 42 VAL 43 LYS 44 VAL 45 PHE 46 HIS 47 ARG 48 ILE 49 CYS 50 PRO 51 GLU 52 LEU 53 GLN 54 ASN 55 ALA 56 SER 57 ARG 58 THR 59 PRO 60 SER 61 GLY 62 THR 63 LEU 64 VAL 65 ARG 66 VAL 67 GLN 68 LEU 69 LEU 70 GLY 71 GLN 72 PHE 73 PRO 74 GLN 75 TRP 76 LEU 77 ALA 78 GLU 79 ASN 80 ALA 81 ALA 82 ARG 83 ALA 84 VAL 85 GLU 86 LEU 87 GLY 88 SER 89 TRP 90 GLY 91 VAL 92 ASP 93 LEU 94 ASN 95 CYS 96 GLY 97 ALA 98 PRO 99 SER 100 GLY 105 SER 106 GLY 107 GLY 108 GLY 109 ALA 110 THR 111 LEU 112 LEU 113 LYS 114 ASP 115 PRO 116 GLU 117 LEU 118 ILE 119 TYR 120 GLN 121 GLY 122 ALA 123 LYS 124 ALA 125 MET 126 ARG 127 GLU 128 ALA 129 VAL 130 PRO 131 ALA 132 HIS 133 LEU 134 PRO 135 VAL 136 SER 137 VAL 138 LYS 139 VAL 140 ARG 141 LEU 142 GLY 143 TRP 144 ASP 145 SER 146 GLY 147 GLU 148 LYS 149 LYS 150 PHE 151 GLU 152 ILE 153 ALA 154 ASP 155 ALA 156 VAL 157 GLN 158 GLN 159 ALA 160 GLY 161 ALA 162 THR 163 GLU 164 LEU 165 VAL 166 VAL 167 HIS 168 GLY 169 ARG 170 THR 171 LYS 172 GLU 173 GLN 174 GLY 175 TYR 176 ARG 177 ALA 178 GLU 179 HIS 180 ILE 181 ASP 182 TRP 183 GLN 184 ALA 185 ILE 186 GLY 187 ASP 188 ILE 189 ARG 190 GLN 191 ARG 192 LEU 193 ASN 194 ILE 195 PRO 196 VAL 197 ILE 198 ALA 199 ASN 200 GLY 201 GLU 202 ILE 203 TRP 204 ASP 205 TRP 206 GLN 207 SER 208 ALA 209 GLN 210 GLN 211 CYS 212 MET 213 ALA 214 ILE 215 SER 216 GLY 217 CYS 218 ASP 219 ALA 220 VAL 221 MET 222 ILE 223 GLY 224 ARG 225 GLY 226 ALA 227 LEU 228 ASN 229 ILE 230 PRO 231 ASN 232 LEU 233 SER 234 ARG 235 VAL 236 VAL 237 LYS 238 TYR 239 ASN 240 GLU 241 PRO 242 ARG 243 MET 244 PRO 245 TRP 246 PRO 247 GLU 248 VAL 249 VAL 250 ALA 251 LEU 252 LEU 253 GLN 254 LYS 255 TYR 256 THR 257 ARG 258 LEU 259 GLU 260 LYS 261 GLN 262 GLY 263 ASP 264 THR 265 GLY 266 LEU 267 TYR 268 HIS 269 VAL 270 ALA 271 ARG 272 ILE 273 LYS 274 GLN 275 TRP 276 LEU 277 SER 278 TYR 279 LEU 280 ARG 281 LYS 282 GLU 283 TYR 284 ASP 285 GLU 286 ALA 287 THR 288 GLU 289 LEU 290 PHE 291 GLN 292 HIS 293 VAL 294 ARG 295 VAL 296 LEU 297 ASN 298 ASN 299 SER 300 PRO 301 ASP 302 ILE 303 ALA 304 ARG 305 ALA 306 ILE 307 GLN 308 ALA 309 ILE 310 ASP 311 ILE 312 GLU 313 LYS 314

Nucleic acids

Unit 4	G 1 C 2 G 3 C 4 G 5 G 6 A 7 U 8 A 9 G 10 C 11 U 12 C 13 A 14 G 15 U 16 C 17 G 18 G 19 U 20 A 21 G 22 A 23 G 24 C 25 A 26 G 27 G 28 G 29 G 30 A 31 U 32 U 33 G 34 A 35 A 36 A 37 A 38 U 39 C 40 C 41 C 42 C 43 G 44 U 45 G 46 U 47 C 48 C 49 U 50 U 51 G 52 G 53 U 54 U 55 C 56 G 57 A 58 U 59 U 60 C 61 C 62 G 63 A 64 G 65 U 66 C 67 C 68 G 69 C 70 G 71 C 72 A 73 C 74
Unit 5	G 3 C 4 G 5 G 6 A 7 U 8 A 9 G 10 C 11 U 12 C 13 A 14 G 15 U 16 C 17 G 18 G 19 U 20 A 21 G 22 A 23 G 24 C 25 A 26 G 27 G 28 G 29 G 30 A 31 U 32 U 33 G 34 A 35 A 36 A 37 A 38 U 39 C 40 C 41 C 42 C 43 G 44 U 45 G 46 U 47 C 48 C 49 U 50 U 51 G 52 G 53 U 54 U 55 C 56 G 57 A 58 U 59 U 60 C 61 C 62 G 63 A 64 G 65 U 66 C 67 C 68 G 69
Unit 6	G 1 C 2 G 3 C 4 G 5 G 6 A 7 U 8 A 9 G 10 C 11 U 12 C 13 A 14 G 15 U 16 C 17 G 18 G 19 U 20 A 21 G 22 A 23 G 24 C 25 A 26 G 27 G 28 G 29 G 30 A 31 U 32 U 33 G 34 A 35 A 36 A 37 A 38 U 39 C 40 C 41 C 42 C 43 G 44 U 45 G 46 U 47 C 48 C 49 U 50 U 51 G 52 G 53 U 54 U 55 C 56 G 57 A 58 U 59 U 60 C 61 C 62 G 63 A 64 G 65 U 66 C 67 C 68 G 69 C 70 G 71

Ligands

Unit 7	FMN 401
Unit 8	MG 401 FMN 402
Unit 9	FMN 401
Unit 10	MN 101 MG 102 MG 103 MG 104 MG 105 MG 106 MG 107 MG 108 MG 109
Unit 11	MN 101 MG 102 MG 103 MG 104 MG 105 MG 106 MG 107 MG 108 MG 109
Unit 12	MN 101 MG 102 MG 103 MG 104 MG 105 MG 106 MG 107 MG 108 MG 109