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Sequence, Chains, Asymmetric and Biological Units

Title 3',3'-CGAMP RIBOSWITCH BOUND WITH C-DI-GMP
Keywords RIBOSWITCH, 3', 3'-CGAMP, SPINACH, RNA STRUCTURE, C-DI-GMP,
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4YB0     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    R 83 1780 0
2  RNA    A 83 1780 0
3  Ligand   RNA (84-MER)  R 7 0 79
4  Ligand   RNA (84-MER)  A 4 0 76
5 Water     42 0 42
total       219 3560 197

Nucleic acids
Unit 1 G2 U3 A4 C5 A6 C7 G8 A9 C10 A11 A12 U13 A14 C15 U16 A17 A18 A19 C20 C21 A22 U23 C24 C25 G26 C27 G28 A29 G30 G31 A32 U33 G34 G35 G36 G37 C38 G39 G40 A41 A42 A43 G44 C45 C46 U47 A48 A49 G50 G51 G52 U53 C54 U55 C56 C57 C58 U59 G60 A61 G62 A63 C64 A65 G66 C67 C68 G69 G70 G71 C72 U73 G74 C75 C76 G77 A78 A79 A80 U81 A82 U83 C84
Unit 2 G2 U3 A4 C5 A6 C7 G8 A9 C10 A11 A12 U13 A14 C15 U16 A17 A18 A19 C20 C21 A22 U23 C24 C25 G26 C27 G28 A29 G30 G31 A32 U33 G34 G35 G36 G37 C38 G39 G40 A41 A42 A43 G44 C45 C46 U47 A48 A49 G50 G51 G52 U53 C54 U55 C56 C57 C58 U59 G60 A61 G62 A63 C64 A65 G66 C67 C68 G69 G70 G71 C72 U73 G74 C75 C76 G77 A78 A79 A80 U81 A82 U83 C84

Ligands
Unit 3 GDP101 C2E102 MG103 MG104 MG105 K106 K107
Unit 4 GDP101 C2E102 MG103 MG104

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany