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Sequence, Chains, Asymmetric and Biological Units

Title OCEANOBACILLUS IHEYENSIS GROUP II INTRON DOMAIN 1
Keywords GROUP II INTRON, DOMAIN 1, RNA, TRANSFERASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4Y1O     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 258 5537 0
2  RNA    B 256 5507 0
3  Ligand   GROUP II INTRON, DOMAIN 1  A 8 0 8
4  Ligand   GROUP II INTRON, DOMAIN 1  B 13 0 13
5 Water     1 0 2
total       536 11044 23

Nucleic acids
Unit 1 U-3 U-2 A-1 U0 C6 C7 C8 G9 G10 C11 A12 U13 G14 G15 G16 U17 G18 C19 A20 G21 U22 C23 U24 A25 U26 A27 G28 G29 G30 U31 G32 A33 G34 A35 G36 U37 C38 C39 C40 G41 A42 A43 C44 U45 G46 U47 G48 A49 A50 G51 G52 C53 A54 G55 A56 A57 G58 U59 A60 A61 C62 A63 G64 U65 U66 A67 G68 C69 C70 U71 A72 A73 C74 G75 C76 A77 A78 G79 G80 G81 U82 U84 C85 C86 G87 U88 G89 G90 A91 A92 A93 C94 A95 U96 G97 G98 A99 A100 U101 C102 G108 A109 A110 G111 C112 G113 G114 A115 C116 G117 G118 C119 A120 A121 A122 C123 C124 U125 U126 C127 G128 G129 U130 C131 U132 G133 A134 G135 G136 A137 A138 C139 A140 C141 G142 A143 A144 C145 U146 U147 C148 A149 U150 A151 U152 G153 A154 G155 G156 C157 U158 A159 G160 G161 U162 A163 U164 C165 A166 A167 U168 G169 G170 A171 U172 G173 A174 G175 U176 U177 U178 G179 C180 A181 U182 A183 A184 C185 A186 A187 A188 A189 C190 A191 A192 A193 G194 U195 C196 C197 U198 U199 U200 C201 U202 G203 C204 C205 A206 G209 U210 U211 G212 G213 U214 A215 C216 A217 G218 A219 G220 U221 A222 A223 A224 U225 G226 A227 A228 G229 C230 A231 G232 A233 U234 U238 G239 A240 A241 G242 G243 G244 A245 A246 A247 G248 A249 C250 U251 G252 C253 A254 U255 U256 C257 U258 U259 A260 C261 C262 C263 G264 G265 G266 G267 A268 U269 C270
Unit 2 G-4 U-3 U-2 A-1 C6 C7 C8 G9 G10 C11 A12 U13 G14 G15 G16 U17 G18 C19 A20 G21 U22 C23 U24 A25 U26 A27 G28 G29 G30 U31 G32 A33 G34 A35 G36 U37 C38 C39 C40 G41 A42 A43 C44 U45 G46 U47 G48 A49 A50 G51 G52 C53 A54 G55 A56 A57 G58 U59 A60 A61 C62 A63 G64 U65 U66 A67 G68 C69 C70 U71 A72 A73 C74 G75 C76 A77 A78 G79 G80 G81 U82 G83 U84 C85 C86 G87 U88 G89 G90 A91 A92 A93 C94 A95 U96 G97 G98 A99 A100 G108 A109 A110 G111 C112 G113 G114 A115 C116 G117 G118 C119 A120 A121 A122 C123 C124 U125 U126 C127 G128 G129 U130 C131 U132 G133 A134 G135 G136 A137 A138 A140 C141 G142 A143 A144 C145 U146 U147 C148 A149 U150 A151 G153 A154 G155 G156 C157 U158 A159 G160 G161 U162 A163 U164 C165 A166 A167 U168 G169 G170 A171 U172 G173 A174 G175 U176 U177 U178 G179 C180 A181 U182 A183 A184 C185 A186 A187 A188 A189 C190 A191 A192 A193 G194 U195 C196 C197 U198 U199 U200 C201 U202 G203 C204 C205 A206 A207 A208 G209 U210 U211 G212 G213 U214 A215 C216 A217 G218 A219 G220 U221 A222 A223 A224 U225 G226 A227 A228 G229 C230 A231 G232 A233 U234 U238 G239 A240 A241 G242 G243 G244 A245 A246 A247 G248 A249 C250 U251 G252 C253 A254 U255 U256 C257 U258 U259 A260 C262 C263 G264 G265 G266 G267 A268 U269 C270

Ligands
Unit 3 MG400 MG401 MG402 MG403 MG404 MG405 MG406 K407
Unit 4 MG400 MG401 MG402 MG403 MG404 MG405 MG406 MG407 MG408 MG409 MG410 MG411 K412

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany