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Sequence, Chains, Asymmetric and Biological Units

Title LACTOCOCCUS LACTIS YYBP-YKOY MN RIBOSWITCH BOUND TO MN2+
Keywords RIBOSWITCH, MANGANESE-BINDING, RNA
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4Y1I     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 100 2142 0
2  RNA    B 100 2142 0
3  Ligand   LACTOCOCCUS LACTIS YYBP-YKOY RIBOSWITCH  A 26 0 88
4  Ligand   LACTOCOCCUS LACTIS YYBP-YKOY RIBOSWITCH  B 23 0 23
5 Water     56 0 56
total       305 4284 167

Nucleic acids
Unit 1 A3 A4 A5 G6 G7 G8 G9 A10 G11 U12 A13 G14 C15 G16 U17 C18 G19 G20 G21 A22 A23 A24 C25 C26 G27 A28 A29 A30 C31 A32 A33 A34 G35 U36 C37 G38 U39 C40 A41 A42 U43 U44 C45 G46 U47 G48 A49 G50 G51 A52 A53 A54 C55 U56 C57 A58 C59 C60 G61 G62 C63 U64 U65 U66 G67 U68 U69 G70 A71 C72 A73 U74 A75 C76 G77 A78 A79 A80 G81 U82 A83 U84 G85 U86 U87 U88 A89 G90 C91 A92 A93 G94 A95 C96 C97 U98 U99 U100 C101 C102
Unit 2 A3 A4 A5 G6 G7 G8 G9 A10 G11 U12 A13 G14 C15 G16 U17 C18 G19 G20 G21 A22 A23 A24 C25 C26 G27 A28 A29 A30 C31 A32 A33 A34 G35 U36 C37 G38 U39 C40 A41 A42 U43 U44 C45 G46 U47 G48 A49 G50 G51 A52 A53 A54 C55 U56 C57 A58 C59 C60 G61 G62 C63 U64 U65 U66 G67 U68 U69 G70 A71 C72 A73 U74 A75 C76 G77 A78 A79 A80 G81 U82 A83 U84 G85 U86 U87 U88 A89 G90 C91 A92 A93 G94 A95 C96 C97 U98 U99 U100 C101 C102

Ligands
Unit 3 GTP201 MG202 MG203 MG204 MG205 MG206 MG207 MG208 MG209 MG210 MG211 MG212 BA213 BA214 BA215 BA216 BA217 BA218 BA219 BA220 BA221 BA222 BA223 MN224 MN225 GTP226
Unit 4 MG201 MG202 MG203 MG204 MG205 MG206 MG207 MG208 MG209 MG210 MG211 MG212 MG213 MG214 BA215 BA216 BA217 BA218 BA219 BA220 BA221 BA222 MN223

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany