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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF RNASE J COMPLEXED WITH RNA
Keywords RIBONUCLEASE, TWO-METAL-ION, DIMERIZATION, MANGANESE, DEINOC RADIODURANS, RNA BINDING PROTEIN-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4XWW     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DR2417  A 545 4180 0
2  Protein   DR2417  B 543 4113 0
3  DNA/RNA    D 7 121 0
4  DNA/RNA    E 7 121 0
5  Ligand   DR2417  A 5 0 15
6  Ligand   DR2417  B 3 0 3
7 Water     759 0 759
total       1869 8535 777
Proteins
Unit 1 PRO15 ALA16 PRO17 THR18 LEU19 GLU20 VAL21 ILE22 PRO23 LEU24 GLY25 GLY26 MET27 GLY28 GLU29 ILE30 GLY31 LYS32 ASN33 ILE34 THR35 VAL36 PHE37 ARG38 TYR39 GLY40 ASP41 GLU42 ILE43 VAL44 VAL45 VAL46 ASP47 GLY48 GLY49 LEU50 ALA51 PHE52 PRO53 LYS54 ALA55 HIS56 GLN57 MET58 GLY59 ILE60 ASP61 LEU62 ILE63 VAL64 PRO65 ARG66 ILE67 ASP68 TYR69 LEU70 LEU71 GLU72 HIS73 GLN74 ASP75 LYS76 ILE77 LYS78 GLY79 TRP80 ILE81 LEU82 THR83 HIS84 GLY85 HIS86 GLU87 ASP88 HIS89 ILE90 GLY91 GLY92 LEU93 PRO94 TYR95 ILE96 PHE97 ALA98 ARG99 LEU100 PRO101 ARG102 VAL103 PRO104 VAL105 TYR106 GLY107 LEU108 PRO109 LEU110 THR111 LEU112 ALA113 LEU114 VAL115 ARG116 GLU117 LYS118 LEU119 SER120 GLU121 PHE122 GLY123 LEU124 GLN125 ASP126 VAL127 ASP128 LEU129 ARG130 GLU131 VAL132 THR133 TYR134 GLY135 ASP136 GLU137 VAL138 ARG139 PHE140 GLY141 GLN142 SER143 PHE144 VAL145 ALA146 GLU147 PHE148 PHE149 CYS150 MET151 THR152 HIS153 SER154 ILE155 PRO156 ASP157 ASN158 ALA159 GLY160 TYR161 ILE162 LEU163 LYS164 THR165 PRO166 VAL167 GLY168 ASP169 VAL170 LEU171 HIS172 THR173 GLY174 ASP175 PHE176 LYS177 ILE178 ASP179 PRO180 ASP181 VAL182 GLY183 THR184 GLY185 ALA186 GLY187 ILE188 VAL189 SER190 ASP191 LEU192 GLU193 ARG194 VAL195 GLU196 GLN197 ALA198 GLY199 LYS200 ASP201 GLY202 VAL203 LEU204 LEU205 LEU206 ILE207 SER208 ASP209 SER210 THR211 ASN212 ALA213 GLU214 ARG215 PRO216 GLY217 HIS218 THR219 PRO220 SER221 GLU222 ALA223 GLU224 ILE225 ALA226 ARG227 ASN228 LEU229 GLU230 GLU231 ILE232 ILE233 LYS234 GLY235 CYS236 ARG237 GLY238 ARG239 VAL240 PHE241 LEU242 THR243 THR244 PHE245 ALA246 SER247 GLN248 VAL249 TYR250 ARG251 ILE252 GLN253 ASN254 ILE255 LEU256 ASP257 LEU258 ALA259 HIS260 ARG261 GLN262 GLY263 ARG264 ARG265 VAL266 VAL267 MET268 GLU269 GLY270 ARG271 SER272 MET273 ILE274 LYS275 TYR276 ALA277 GLN278 ALA279 ALA280 GLN281 ALA282 THR283 GLY284 HIS285 MET286 ASN287 PRO288 PRO289 GLU290 PRO291 PHE292 LEU293 THR294 SER295 GLU296 GLU297 VAL298 GLY299 GLU300 LEU301 GLN302 ASP303 GLN304 GLN305 VAL306 LEU307 PHE308 VAL309 CYS310 THR311 GLY312 SER313 GLN314 GLY315 GLN316 PRO317 MET318 ALA319 VAL320 LEU321 GLY322 ARG323 LEU324 ALA325 PHE326 GLY327 THR328 HIS329 ALA330 LYS331 ILE332 ALA333 LEU334 ARG335 ARG336 GLY337 ASP338 THR339 VAL340 ILE341 LEU342 SER343 SER344 ASN345 PRO346 ILE347 PRO348 GLY349 ASN350 GLU351 ASP352 ALA353 VAL354 ASN355 LEU356 ILE357 VAL358 ASN359 ARG360 LEU361 TYR362 GLU363 ILE364 GLY365 VAL366 ASP367 VAL368 VAL369 TYR370 PRO371 PRO372 THR373 TYR374 ARG375 VAL376 HIS377 ALA378 SER379 GLY380 HIS381 ALA382 SER383 GLN384 GLU385 GLU386 LEU387 ALA388 THR389 ILE390 LEU391 ASN392 LEU393 THR394 ARG395 PRO396 LYS397 PHE398 PHE399 LEU400 PRO401 TRP402 HIS403 GLY404 GLU405 PRO406 ARG407 HIS408 GLN409 ILE410 ASN411 HIS412 ALA413 LYS414 LEU415 ALA416 GLN417 THR418 LEU419 PRO420 ARG421 PRO422 PRO423 LYS424 ARG425 THR426 LEU427 ILE428 ALA429 LYS430 ASN431 GLY432 ASP433 ILE434 VAL435 ASN436 LEU437 GLY438 PRO439 ASP440 GLU441 PHE442 ARG443 VAL444 SER445 GLY446 THR447 VAL448 ALA449 ALA450 GLY451 ALA452 VAL453 TYR454 VAL455 ASP456 GLY457 LEU458 GLY459 VAL460 GLY461 ASP462 VAL463 ASN464 ASP465 ASP466 VAL467 LEU468 LEU469 ASP470 ARG471 VAL472 ASN473 LEU474 SER475 GLN476 GLU477 GLY478 LEU479 LEU480 ILE481 LEU482 THR483 ALA484 VAL485 LEU486 HIS487 PRO488 THR489 PRO490 HIS491 VAL492 GLU493 VAL494 VAL495 ALA496 ARG497 GLY498 PHE499 ALA500 ARG501 PRO502 ASN503 ARG504 ASP505 LEU506 GLU507 LEU508 GLN509 ILE510 ARG511 ARG512 VAL513 ALA514 LEU515 GLU516 ALA517 VAL518 GLU519 GLN520 GLY521 LEU522 ARG523 GLU524 LYS525 LYS526 ARG527 LEU528 GLU529 ASP530 VAL531 ARG532 ASP533 ASP534 MET535 TYR536 GLY537 ALA538 VAL539 ARG540 ARG541 PHE542 THR543 ARG544 LYS545 ALA546 THR547 GLY548 ARG549 ASN550 PRO551 VAL552 LEU553 ILE554 PRO555 MET556 ILE557 VAL558 ASP559
Unit 2 ALA16 PRO17 THR18 LEU19 GLU20 VAL21 ILE22 PRO23 LEU24 GLY25 GLY26 MET27 GLY28 GLU29 ILE30 GLY31 LYS32 ASN33 ILE34 THR35 VAL36 PHE37 ARG38 TYR39 GLY40 ASP41 GLU42 ILE43 VAL44 VAL45 VAL46 ASP47 GLY48 GLY49 LEU50 ALA51 PHE52 PRO53 LYS54 ALA55 HIS56 GLN57 MET58 GLY59 ILE60 ASP61 LEU62 ILE63 VAL64 PRO65 ARG66 ILE67 ASP68 TYR69 LEU70 LEU71 GLU72 HIS73 GLN74 ASP75 LYS76 ILE77 LYS78 GLY79 TRP80 ILE81 LEU82 THR83 HIS84 GLY85 HIS86 GLU87 ASP88 HIS89 ILE90 GLY91 GLY92 LEU93 PRO94 TYR95 ILE96 PHE97 ALA98 ARG99 LEU100 PRO101 ARG102 VAL103 PRO104 VAL105 TYR106 GLY107 LEU108 PRO109 LEU110 THR111 LEU112 ALA113 LEU114 VAL115 ARG116 GLU117 LYS118 LEU119 SER120 GLU121 PHE122 GLY123 LEU124 GLN125 ASP126 VAL127 ASP128 LEU129 ARG130 GLU131 VAL132 THR133 TYR134 GLY135 ASP136 GLU137 VAL138 ARG139 PHE140 GLY141 GLN142 SER143 PHE144 VAL145 ALA146 GLU147 PHE148 PHE149 CYS150 MET151 THR152 HIS153 SER154 ILE155 PRO156 ASP157 ASN158 ALA159 GLY160 TYR161 ILE162 LEU163 LYS164 THR165 PRO166 VAL167 GLY168 ASP169 VAL170 LEU171 HIS172 THR173 GLY174 ASP175 PHE176 LYS177 ILE178 ASP179 PRO180 ASP181 VAL182 GLY183 THR184 GLY185 ALA186 GLY187 ILE188 VAL189 SER190 ASP191 LEU192 GLU193 ARG194 VAL195 GLU196 GLN197 ALA198 GLY199 LYS200 ASP201 GLY202 VAL203 LEU204 LEU205 LEU206 ILE207 SER208 ASP209 SER210 THR211 ASN212 ALA213 GLU214 ARG215 PRO216 GLY217 HIS218 THR219 PRO220 SER221 GLU222 ALA223 GLU224 ILE225 ALA226 ARG227 ASN228 LEU229 GLU230 GLU231 ILE232 ILE233 LYS234 GLY235 CYS236 ARG237 GLY238 ARG239 VAL240 PHE241 LEU242 THR243 THR244 PHE245 ALA246 SER247 GLN248 VAL249 TYR250 ARG251 ILE252 GLN253 ASN254 ILE255 LEU256 ASP257 LEU258 ALA259 HIS260 ARG261 GLN262 GLY263 ARG264 ARG265 VAL266 VAL267 MET268 GLU269 GLY270 ARG271 SER272 MET273 ILE274 LYS275 TYR276 ALA277 GLN278 ALA279 ALA280 GLN281 ALA282 THR283 GLY284 HIS285 MET286 ASN287 PRO288 PRO289 GLU290 PRO291 PHE292 LEU293 THR294 SER295 GLU296 GLU297 VAL298 GLY299 GLU300 LEU301 GLN302 ASP303 GLN304 GLN305 VAL306 LEU307 PHE308 VAL309 CYS310 THR311 GLY312 SER313 GLN314 GLY315 GLN316 PRO317 MET318 ALA319 VAL320 LEU321 GLY322 ARG323 LEU324 ALA325 PHE326 GLY327 THR328 HIS329 ALA330 LYS331 ILE332 ALA333 LEU334 ARG335 ARG336 GLY337 ASP338 THR339 VAL340 ILE341 LEU342 SER343 SER344 ASN345 PRO346 ILE347 PRO348 GLY349 ASN350 GLU351 ASP352 ALA353 VAL354 ASN355 LEU356 ILE357 VAL358 ASN359 ARG360 LEU361 TYR362 GLU363 ILE364 GLY365 VAL366 ASP367 VAL368 VAL369 TYR370 PRO371 PRO372 THR373 TYR374 ARG375 VAL376 HIS377 ALA378 SER379 GLY380 HIS381 ALA382 SER383 GLN384 GLU385 GLU386 LEU387 ALA388 THR389 ILE390 LEU391 ASN392 LEU393 THR394 ARG395 PRO396 LYS397 PHE398 PHE399 LEU400 PRO401 TRP402 HIS403 GLY404 GLU405 PRO406 ARG407 HIS408 GLN409 ILE410 ASN411 HIS412 ALA413 LYS414 LEU415 ALA416 GLN417 THR418 LEU419 PRO420 ARG421 PRO422 PRO423 LYS424 ARG425 THR426 LEU427 ILE428 ALA429 LYS430 ASN431 GLY432 ASP433 ILE434 VAL435 ASN436 LEU437 GLY438 PRO439 ASP440 GLU441 PHE442 ARG443 VAL444 SER445 GLY446 THR447 VAL448 ALA449 ALA450 GLY451 ALA452 VAL453 TYR454 VAL455 ASP456 GLY457 LEU458 GLY459 VAL460 GLY461 ASP462 VAL463 ASN464 ASP465 ASP466 VAL467 LEU468 LEU469 ASP470 ARG471 VAL472 ASN473 LEU474 SER475 GLN476 GLU477 GLY478 LEU479 LEU480 ILE481 LEU482 THR483 ALA484 VAL485 LEU486 HIS487 PRO488 THR489 PRO490 HIS491 VAL492 GLU493 VAL494 VAL495 ALA496 ARG497 GLY498 PHE499 ALA500 ARG501 PRO502 ASN503 ARG504 ASP505 LEU506 GLU507 LEU508 GLN509 ILE510 ARG511 ARG512 VAL513 ALA514 LEU515 GLU516 ALA517 VAL518 GLU519 GLN520 GLY521 LEU522 ARG523 GLU524 LYS525 LYS526 ARG527 LEU528 GLU529 ASP530 VAL531 ARG532 ASP533 ASP534 MET535 TYR536 GLY537 ALA538 VAL539 ARG540 ARG541 PHE542 THR543 ARG544 LYS545 ALA546 THR547 GLY548 ARG549 ASN550 PRO551 VAL552 LEU553 ILE554 PRO555 MET556 ILE557 VAL558
Nucleic acids
Unit 3 U0 U1 U2 U3 U4 U5 U6
Unit 4 U0 U1 U2 U3 U4 U5 U6
Ligands
Unit 5 ZN601 ZN602 MN603 GOL604 GOL605
Unit 6 ZN601 ZN602 MN603
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany