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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HUMAN KDM4C CATALYTIC DOMAIN WITH OGA
Keywords LYSINE-SPECIFIC DEMETHYLASE 4C, OXIDOREDUCTASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4XDO     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   LYSINE-SPECIFIC DEMETHYLASE 4C  A 338 2774 0
2  Protein   LYSINE-SPECIFIC DEMETHYLASE 4C  B 338 2774 0
3  Ligand   LYSINE-SPECIFIC DEMETHYLASE 4C  A 6 0 36
4  Ligand   LYSINE-SPECIFIC DEMETHYLASE 4C  B 4 0 25
5 Water     377 0 377
total       1063 5548 438

Proteins
Unit 1 LEU10 ASN11 PRO12 SER13 CYS14 LYS15 ILE16 MET17 THR18 PHE19 ARG20 PRO21 SER22 MET23 GLU24 GLU25 PHE26 ARG27 GLU28 PHE29 ASN30 LYS31 TYR32 LEU33 ALA34 TYR35 MET36 GLU37 SER38 LYS39 GLY40 ALA41 HIS42 ARG43 ALA44 GLY45 LEU46 ALA47 LYS48 VAL49 ILE50 PRO51 PRO52 LYS53 GLU54 TRP55 LYS56 PRO57 ARG58 GLN59 CYS60 TYR61 ASP62 ASP63 ILE64 ASP65 ASN66 LEU67 LEU68 ILE69 PRO70 ALA71 PRO72 ILE73 GLN74 GLN75 MET76 VAL77 THR78 GLY79 GLN80 SER81 GLY82 LEU83 PHE84 THR85 GLN86 TYR87 ASN88 ILE89 GLN90 LYS91 LYS92 ALA93 MET94 THR95 VAL96 LYS97 GLU98 PHE99 ARG100 GLN101 LEU102 ALA103 ASN104 SER105 GLY106 LYS107 TYR108 CYS109 THR110 PRO111 ARG112 TYR113 LEU114 ASP115 TYR116 GLU117 ASP118 LEU119 GLU120 ARG121 LYS122 TYR123 TRP124 LYS125 ASN126 LEU127 THR128 PHE129 VAL130 ALA131 PRO132 ILE133 TYR134 GLY135 ALA136 ASP137 ILE138 ASN139 GLY140 SER141 ILE142 TYR143 ASP144 GLU145 GLY146 VAL147 ASP148 GLU149 TRP150 ASN151 ILE152 ALA153 ARG154 LEU155 ASN156 THR157 VAL158 LEU159 ASP160 VAL161 VAL162 GLU163 GLU164 GLU165 CYS166 GLY167 ILE168 SER169 ILE170 GLU171 GLY172 VAL173 ASN174 THR175 PRO176 TYR177 LEU178 TYR179 PHE180 GLY181 MET182 TRP183 LYS184 THR185 THR186 PHE187 ALA188 TRP189 HIS190 THR191 GLU192 ASP193 MET194 ASP195 LEU196 TYR197 SER198 ILE199 ASN200 TYR201 LEU202 HIS203 PHE204 GLY205 GLU206 PRO207 LYS208 SER209 TRP210 TYR211 ALA212 ILE213 PRO214 PRO215 GLU216 HIS217 GLY218 LYS219 ARG220 LEU221 GLU222 ARG223 LEU224 ALA225 GLN226 GLY227 PHE228 PHE229 PRO230 SER231 SER232 SER233 GLN234 GLY235 CYS236 ASP237 ALA238 PHE239 LEU240 ARG241 HIS242 LYS243 MET244 THR245 LEU246 ILE247 SER248 PRO249 SER250 VAL251 LEU252 LYS253 LYS254 TYR255 GLY256 ILE257 PRO258 PHE259 ASP260 LYS261 ILE262 THR263 GLN264 GLU265 ALA266 GLY267 GLU268 PHE269 MET270 ILE271 THR272 PHE273 PRO274 TYR275 GLY276 TYR277 HIS278 ALA279 GLY280 PHE281 ASN282 HIS283 GLY284 PHE285 ASN286 CYS287 ALA288 GLU289 SER290 THR291 ASN292 PHE293 ALA294 THR295 VAL296 ARG297 TRP298 ILE299 ASP300 TYR301 GLY302 LYS303 VAL304 ALA305 LYS306 LEU307 CYS308 THR309 CYS310 ARG311 LYS312 ASP313 MET314 VAL315 LYS316 ILE317 SER318 MET319 ASP320 ILE321 PHE322 VAL323 ARG324 LYS325 PHE326 GLN327 PRO328 ASP329 ARG330 TYR331 GLN332 LEU333 TRP334 LYS335 GLN336 GLY337 LYS338 ASP339 ILE340 TYR341 THR342 ILE343 ASP344 HIS345 THR346 LYS347
Unit 2 LEU10 ASN11 PRO12 SER13 CYS14 LYS15 ILE16 MET17 THR18 PHE19 ARG20 PRO21 SER22 MET23 GLU24 GLU25 PHE26 ARG27 GLU28 PHE29 ASN30 LYS31 TYR32 LEU33 ALA34 TYR35 MET36 GLU37 SER38 LYS39 GLY40 ALA41 HIS42 ARG43 ALA44 GLY45 LEU46 ALA47 LYS48 VAL49 ILE50 PRO51 PRO52 LYS53 GLU54 TRP55 LYS56 PRO57 ARG58 GLN59 CYS60 TYR61 ASP62 ASP63 ILE64 ASP65 ASN66 LEU67 LEU68 ILE69 PRO70 ALA71 PRO72 ILE73 GLN74 GLN75 MET76 VAL77 THR78 GLY79 GLN80 SER81 GLY82 LEU83 PHE84 THR85 GLN86 TYR87 ASN88 ILE89 GLN90 LYS91 LYS92 ALA93 MET94 THR95 VAL96 LYS97 GLU98 PHE99 ARG100 GLN101 LEU102 ALA103 ASN104 SER105 GLY106 LYS107 TYR108 CYS109 THR110 PRO111 ARG112 TYR113 LEU114 ASP115 TYR116 GLU117 ASP118 LEU119 GLU120 ARG121 LYS122 TYR123 TRP124 LYS125 ASN126 LEU127 THR128 PHE129 VAL130 ALA131 PRO132 ILE133 TYR134 GLY135 ALA136 ASP137 ILE138 ASN139 GLY140 SER141 ILE142 TYR143 ASP144 GLU145 GLY146 VAL147 ASP148 GLU149 TRP150 ASN151 ILE152 ALA153 ARG154 LEU155 ASN156 THR157 VAL158 LEU159 ASP160 VAL161 VAL162 GLU163 GLU164 GLU165 CYS166 GLY167 ILE168 SER169 ILE170 GLU171 GLY172 VAL173 ASN174 THR175 PRO176 TYR177 LEU178 TYR179 PHE180 GLY181 MET182 TRP183 LYS184 THR185 THR186 PHE187 ALA188 TRP189 HIS190 THR191 GLU192 ASP193 MET194 ASP195 LEU196 TYR197 SER198 ILE199 ASN200 TYR201 LEU202 HIS203 PHE204 GLY205 GLU206 PRO207 LYS208 SER209 TRP210 TYR211 ALA212 ILE213 PRO214 PRO215 GLU216 HIS217 GLY218 LYS219 ARG220 LEU221 GLU222 ARG223 LEU224 ALA225 GLN226 GLY227 PHE228 PHE229 PRO230 SER231 SER232 SER233 GLN234 GLY235 CYS236 ASP237 ALA238 PHE239 LEU240 ARG241 HIS242 LYS243 MET244 THR245 LEU246 ILE247 SER248 PRO249 SER250 VAL251 LEU252 LYS253 LYS254 TYR255 GLY256 ILE257 PRO258 PHE259 ASP260 LYS261 ILE262 THR263 GLN264 GLU265 ALA266 GLY267 GLU268 PHE269 MET270 ILE271 THR272 PHE273 PRO274 TYR275 GLY276 TYR277 HIS278 ALA279 GLY280 PHE281 ASN282 HIS283 GLY284 PHE285 ASN286 CYS287 ALA288 GLU289 SER290 THR291 ASN292 PHE293 ALA294 THR295 VAL296 ARG297 TRP298 ILE299 ASP300 TYR301 GLY302 LYS303 VAL304 ALA305 LYS306 LEU307 CYS308 THR309 CYS310 ARG311 LYS312 ASP313 MET314 VAL315 LYS316 ILE317 SER318 MET319 ASP320 ILE321 PHE322 VAL323 ARG324 LYS325 PHE326 GLN327 PRO328 ASP329 ARG330 TYR331 GLN332 LEU333 TRP334 LYS335 GLN336 GLY337 LYS338 ASP339 ILE340 TYR341 THR342 ILE343 ASP344 HIS345 THR346 LYS347

Ligands
Unit 3 ZN401 FE402 OGA403 PGE404 EDO405 PGE406
Unit 4 ZN401 FE402 OGA403 PG4404

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany