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| Title | STRUCTURE OF LSD1:COREST IN COMPLEX WITH SSRNA | |
| Keywords | LSD1, LYSINE SPECIFIC DEMETHYLASE, DEMETHYLASE, DEMETHYLATIO COREST, REST CO-REPRESSOR 1, AMINE OXIDASE, COILED-COIL, SW CHROMATIN REMODELLING ENZYME, EPIGENETICS, HISTONE MODIFYIN NON-CODING RNA, NCRNA, KDM1A, OXIDOREDUCTASE-TRANSCRIPTION- COMPLEX | |
| Experiment | X-ray diffraction | |
| Number of Models | 1 |
| Database | ID code | Status | Coordinate files | ||
| Header | Asymmetric unit | Biological unit | |||
| PDB | 4XBF | released | available | available | Quaternary Structure Server |
| Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
|---|---|---|---|---|---|---|
| 1 | Protein | LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A | A | 666 | 10469 | 0 |
| 2 | Protein | REST COREPRESSOR 1 | B | 133 | 2167 | 0 |
| 3 | DNA/RNA | D | 5 | 129 | 0 | |
| 4 | Ligand | LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A | A | 7 | 0 | 123 |
| 5 | Water | 23 | 0 | 23 | ||
| total | 834 | 12765 | 146 |
| Unit 1 | PRO171 SER172 GLY173 VAL174 GLU175 GLY176 ALA177 ALA178 PHE179 GLN180 SER181 ARG182 LEU183 PRO184 HIS185 ASP186 ARG187 MET188 THR189 SER190 GLN191 GLU192 ALA193 ALA194 CYS195 PHE196 PRO197 ASP198 ILE199 ILE200 SER201 GLY202 PRO203 GLN204 GLN205 THR206 GLN207 LYS208 VAL209 PHE210 LEU211 PHE212 ILE213 ARG214 ASN215 ARG216 THR217 LEU218 GLN219 LEU220 TRP221 LEU222 ASP223 ASN224 PRO225 LYS226 ILE227 GLN228 LEU229 THR230 PHE231 GLU232 ALA233 THR234 LEU235 GLN236 GLN237 LEU238 GLU239 ALA240 PRO241 TYR242 ASN243 SER244 ASP245 THR246 VAL247 LEU248 VAL249 HIS250 ARG251 VAL252 HIS253 SER254 TYR255 LEU256 GLU257 ARG258 HIS259 GLY260 LEU261 ILE262 ASN263 PHE264 GLY265 ILE266 TYR267 LYS268 ARG269 ILE270 LYS271 PRO272 LEU273 PRO274 THR275 LYS276 LYS277 THR278 GLY279 LYS280 VAL281 ILE282 ILE283 ILE284 GLY285 SER286 GLY287 VAL288 SER289 GLY290 LEU291 ALA292 ALA293 ALA294 ARG295 GLN296 LEU297 GLN298 SER299 PHE300 GLY301 MET302 ASP303 VAL304 THR305 LEU306 LEU307 GLU308 ALA309 ARG310 ASP311 ARG312 VAL313 GLY314 GLY315 ARG316 VAL317 ALA318 THR319 PHE320 ARG321 LYS322 GLY323 ASN324 TYR325 VAL326 ALA327 ASP328 LEU329 GLY330 ALA331 MET332 VAL333 VAL334 THR335 GLY336 LEU337 GLY338 GLY339 ASN340 PRO341 MET342 ALA343 VAL344 VAL345 SER346 LYS347 GLN348 VAL349 ASN350 MET351 GLU352 LEU353 ALA354 LYS355 ILE356 LYS357 GLN358 LYS359 CYS360 PRO361 LEU362 TYR363 GLU364 ALA365 ASN366 GLY367 GLN368 ALA369 VAL370 PRO371 LYS372 GLU373 LYS374 ASP375 GLU376 MET377 VAL378 GLU379 GLN380 GLU381 PHE382 ASN383 ARG384 LEU385 LEU386 GLU387 ALA388 THR389 SER390 TYR391 LEU392 SER393 HIS394 GLN395 LEU396 ASP397 PHE398 ASN399 VAL400 LEU401 ASN402 ASN403 LYS404 PRO405 VAL406 SER407 LEU408 GLY409 GLN410 ALA411 LEU412 GLU413 VAL414 VAL415 ILE416 GLN417 LEU418 GLN419 GLU420 LYS421 HIS422 VAL423 LYS424 ASP425 GLU426 GLN427 ILE428 GLU429 HIS430 TRP431 LYS432 LYS433 ILE434 VAL435 LYS436 THR437 GLN438 GLU439 GLU440 LEU441 LYS442 GLU443 LEU444 LEU445 ASN446 LYS447 MET448 VAL449 ASN450 LEU451 LYS452 GLU453 LYS454 ILE455 LYS456 GLU457 LEU458 HIS459 GLN460 GLN461 TYR462 LYS463 GLU464 ALA465 SER466 GLU467 VAL468 LYS469 PRO470 PRO471 ARG472 ASP473 ILE474 THR475 ALA476 GLU477 PHE478 LEU479 VAL480 LYS481 SER482 LYS483 HIS484 ARG485 ASP486 LEU487 THR488 ALA489 LEU490 CYS491 LYS492 GLU493 TYR494 ASP495 GLU496 LEU497 ALA498 GLU499 THR500 GLN501 GLY502 LYS503 LEU504 GLU505 GLU506 LYS507 LEU508 GLN509 GLU510 LEU511 GLU512 ALA513 ASN514 PRO515 PRO516 SER517 ASP518 VAL519 TYR520 LEU521 SER522 SER523 ARG524 ASP525 ARG526 GLN527 ILE528 LEU529 ASP530 TRP531 HIS532 PHE533 ALA534 ASN535 LEU536 GLU537 PHE538 ALA539 ASN540 ALA541 THR542 PRO543 LEU544 SER545 THR546 LEU547 SER548 LEU549 LYS550 HIS551 TRP552 ASP553 GLN554 ASP555 ASP556 ASP557 PHE558 GLU559 PHE560 THR561 GLY562 SER563 HIS564 LEU565 THR566 VAL567 ARG568 ASN569 GLY570 TYR571 SER572 CYS573 VAL574 PRO575 VAL576 ALA577 LEU578 ALA579 GLU580 GLY581 LEU582 ASP583 ILE584 LYS585 LEU586 ASN587 THR588 ALA589 VAL590 ARG591 GLN592 VAL593 ARG594 TYR595 THR596 ALA597 SER598 GLY599 CYS600 GLU601 VAL602 ILE603 ALA604 VAL605 ASN606 THR607 ARG608 SER609 THR610 SER611 GLN612 THR613 PHE614 ILE615 TYR616 LYS617 CYS618 ASP619 ALA620 VAL621 LEU622 CYS623 THR624 LEU625 PRO626 LEU627 GLY628 VAL629 LEU630 LYS631 GLN632 GLN633 PRO634 PRO635 ALA636 VAL637 GLN638 PHE639 VAL640 PRO641 PRO642 LEU643 PRO644 GLU645 TRP646 LYS647 THR648 SER649 ALA650 VAL651 GLN652 ARG653 MET654 GLY655 PHE656 GLY657 ASN658 LEU659 ASN660 LYS661 VAL662 VAL663 LEU664 CYS665 PHE666 ASP667 ARG668 VAL669 PHE670 TRP671 ASP672 PRO673 SER674 VAL675 ASN676 LEU677 PHE678 GLY679 HIS680 VAL681 GLY682 SER683 THR684 THR685 ALA686 SER687 ARG688 GLY689 GLU690 LEU691 PHE692 LEU693 PHE694 TRP695 ASN696 LEU697 TYR698 LYS699 ALA700 PRO701 ILE702 LEU703 LEU704 ALA705 LEU706 VAL707 ALA708 GLY709 GLU710 ALA711 ALA712 GLY713 ILE714 MET715 GLU716 ASN717 ILE718 SER719 ASP720 ASP721 VAL722 ILE723 VAL724 GLY725 ARG726 CYS727 LEU728 ALA729 ILE730 LEU731 LYS732 GLY733 ILE734 PHE735 GLY736 SER737 SER738 ALA739 VAL740 PRO741 GLN742 PRO743 LYS744 GLU745 THR746 VAL747 VAL748 SER749 ARG750 TRP751 ARG752 ALA753 ASP754 PRO755 TRP756 ALA757 ARG758 GLY759 SER760 TYR761 SER762 TYR763 VAL764 ALA765 ALA766 GLY767 SER768 SER769 GLY770 ASN771 ASP772 TYR773 ASP774 LEU775 MET776 ALA777 GLN778 PRO779 ILE780 THR781 PRO782 GLY783 PRO784 SER785 ILE786 PRO787 GLY788 ALA789 PRO790 GLN791 PRO792 ILE793 PRO794 ARG795 LEU796 PHE797 PHE798 ALA799 GLY800 GLU801 HIS802 THR803 ILE804 ARG805 ASN806 TYR807 PRO808 ALA809 THR810 VAL811 HIS812 GLY813 ALA814 LEU815 LEU816 SER817 GLY818 LEU819 ARG820 GLU821 ALA822 GLY823 ARG824 ILE825 ALA826 ASP827 GLN828 PHE829 LEU830 GLY831 ALA832 MET833 TYR834 THR835 LEU836 |
| Unit 2 | ARG308 LYS309 PRO310 PRO311 LYS312 GLY313 MET314 PHE315 LEU316 SER317 GLN318 GLU319 ASP320 VAL321 GLU322 ALA323 VAL324 SER325 ALA326 ASN327 ALA328 THR329 ALA330 ALA331 THR332 THR333 VAL334 LEU335 ARG336 GLN337 LEU338 ASP339 MET340 GLU341 LEU342 VAL343 SER344 VAL345 LYS346 ARG347 GLN348 ILE349 GLN350 ASN351 ILE352 LYS353 GLN354 THR355 ASN356 SER357 ALA358 LEU359 LYS360 GLU361 LYS362 LEU363 ASP364 GLY365 GLY366 ILE367 GLU368 PRO369 TYR370 ARG371 LEU372 PRO373 GLU374 VAL375 ILE376 GLN377 LYS378 CYS379 ASN380 ALA381 ARG382 TRP383 THR384 THR385 GLU386 GLU387 GLN388 LEU389 LEU390 ALA391 VAL392 GLN393 ALA394 ILE395 ARG396 LYS397 TYR398 GLY399 ARG400 ASP401 PHE402 GLN403 ALA404 ILE405 SER406 ASP407 VAL408 ILE409 GLY410 ASN411 LYS412 SER413 VAL414 VAL415 GLN416 VAL417 LYS418 ASN419 PHE420 PHE421 VAL422 ASN423 TYR424 ARG425 ARG426 ARG427 PHE428 ASN429 ILE430 ASP431 GLU432 VAL433 LEU434 GLN435 GLU436 TRP437 GLU438 ALA439 GLU440 |
| Unit 3 | U1 U2 A3 G4 G5 |
| Unit 4 | FAD901 SO4902 SO4903 SO4904 SO4905 SO4906 GOL907 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
| Perl script: | PDBscan.pl (15 Sep 2016) |
| Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |