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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF POTENT NEUTRALIZING ANTIBODY M336 IN CO MERS CO-V RBD
Keywords MERS-COV RBD, ANTIBODY M336, NEUTRALIZATION, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4XAK     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   SPIKE GLYCOPROTEIN  A 211 1636 0
2  Protein   HEAVY CHAIN OF NEUTRALIZING ANTIBODY M336  H 227 1664 0
3  Protein   LIGHT CHAIN OF NEUTRALIZING ANTIBODY M336  L 212 1616 0
4  Protein   SPIKE GLYCOPROTEIN  B 211 1636 0
5  Protein   HEAVY CHAIN OF NEUTRALIZING ANTIBODY M336  D 218 1610 0
6  Protein   LIGHT CHAIN OF NEUTRALIZING ANTIBODY M336  E 207 1583 0
7  Ligand   SPIKE GLYCOPROTEIN  A 2 0 28
8  Ligand   LIGHT CHAIN OF NEUTRALIZING ANTIBODY M336  L 2 0 12
9  Ligand   SPIKE GLYCOPROTEIN  B 2 0 28
10 Water     236 0 236
total       1528 9745 304
Proteins
Unit 1 VAL381 GLU382 CYS383 ASP384 PHE385 SER386 PRO387 LEU388 LEU389 SER390 GLY391 THR392 PRO393 PRO394 GLN395 VAL396 TYR397 ASN398 PHE399 LYS400 ARG401 LEU402 VAL403 PHE404 THR405 ASN406 CYS407 ASN408 TYR409 ASN410 LEU411 THR412 LYS413 LEU414 LEU415 SER416 LEU417 PHE418 SER419 VAL420 ASN421 ASP422 PHE423 THR424 CYS425 SER426 GLN427 ILE428 SER429 PRO430 ALA431 ALA432 ILE433 ALA434 SER435 ASN436 CYS437 TYR438 SER439 SER440 LEU441 ILE442 LEU443 ASP444 TYR445 PHE446 SER447 TYR448 PRO449 LEU450 SER451 MET452 LYS453 SER454 ASP455 LEU456 SER457 VAL458 SER459 SER460 ALA461 GLY462 PRO463 ILE464 SER465 GLN466 PHE467 ASN468 TYR469 LYS470 GLN471 SER472 PHE473 SER474 ASN475 PRO476 THR477 CYS478 LEU479 ILE480 LEU481 ALA482 THR483 VAL484 PRO485 HIS486 ASN487 LEU488 THR489 THR490 ILE491 THR492 LYS493 PRO494 LEU495 LYS496 TYR497 SER498 TYR499 ILE500 ASN501 LYS502 CYS503 SER504 ARG505 PHE506 LEU507 SER508 ASP509 ASP510 ARG511 THR512 GLU513 VAL514 PRO515 GLN516 LEU517 VAL518 ASN519 ALA520 ASN521 GLN522 TYR523 SER524 PRO525 CYS526 VAL527 SER528 ILE529 VAL530 PRO531 SER532 THR533 VAL534 TRP535 GLU536 ASP537 GLY538 ASP539 TYR540 TYR541 ARG542 LYS543 GLN544 LEU545 SER546 PRO547 LEU548 GLU549 GLY550 GLY551 GLY552 TRP553 LEU554 VAL555 ALA556 SER557 GLY558 SER559 THR560 VAL561 ALA562 MET563 THR564 GLU565 GLN566 LEU567 GLN568 MET569 GLY570 PHE571 GLY572 ILE573 THR574 VAL575 GLN576 TYR577 GLY578 THR579 ASP580 THR581 ASN582 SER583 VAL584 CYS585 PRO586 LYS587 LEU588 GLU589 PHE590 ALA591
Unit 2 GLN1 VAL2 GLN3 LEU4 VAL5 GLN6 SER7 GLY8 ALA9 GLU10 VAL11 LYS12 LYS13 PRO14 GLY15 SER16 SER17 VAL18 LYS19 VAL20 SER21 CYS22 LYS23 ALA24 SER25 GLY26 GLY27 THR28 PHE29 SER30 SER31 TYR32 ALA33 ILE34 SER35 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 GLN43 GLY44 LEU45 GLU46 TRP47 MET48 GLY49 GLY50 ILE51 ILE52 PRO52A ILE53 PHE54 GLY55 THR56 ALA57 SER58 TYR59 ALA60 GLN61 LYS62 PHE63 GLN64 GLY65 ARG66 VAL67 THR68 ILE69 THR70 ALA71 ASP72 LYS73 SER74 THR75 SER76 THR77 ALA78 TYR79 MET80 GLU81 LEU82 SER82A SER82B LEU82C ARG83 SER84 GLU85 ASP86 THR87 ALA88 VAL89 TYR90 TYR91 CYS92 ALA93 ARG94 VAL95 GLY96 TYR97 CYS98 SER99 SER100 THR100A SER100B CYS100C ASN100D ARG100E GLY100F ALA100G PHE100H ASP101 ILE102 TRP103 GLY104 GLN105 GLY106 THR107 MET108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 SER127 SER128 LYS129 SER130 THR131 SER132 GLY133 GLY134 THR135 ALA136 ALA137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 ASP144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 VAL152 SER153 TRP154 ASN155 SER156 GLY157 ALA158 LEU159 THR160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 SER173 GLY174 LEU175 TYR176 SER177 LEU178 SER179 SER180 VAL181 VAL182 THR183 VAL184 PRO185 SER186 SER187 SER188 LEU189 GLY190 THR191 GLN192 THR193 TYR194 ILE195 CYS196 ASN197 VAL198 ASN199 HIS200 LYS201 PRO202 SER203 ASN204 THR205 LYS206 VAL207 ASP208 LYS209 LYS210 VAL211 GLU212 PRO213 LYS214 SER215
Unit 3 ASP1 ILE2 GLN3 LEU4 THR5 GLN6 SER7 PRO8 SER9 SER10 LEU11 SER12 ALA13 SER14 VAL15 GLY16 ASP17 ARG18 VAL19 THR20 ILE21 THR22 CYS23 ARG24 ALA25 SER26 GLN27 GLY28 ILE29 ARG30 ASN31 ASP32 LEU33 GLY34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 LYS42 ALA43 PRO44 LYS45 LEU46 LEU47 ILE48 TYR49 ALA50 ALA51 SER52 SER53 LEU54 GLN55 SER56 GLY57 VAL58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 ASP70 PHE71 THR72 LEU73 THR74 ILE75 SER76 SER77 LEU78 GLN79 PRO80 GLU81 ASP82 PHE83 ALA84 THR85 TYR86 TYR87 CYS88 GLN89 GLN90 LEU91 ASN92 SER93 TYR94 PRO95 LEU96 THR97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 VAL104 GLU105 ILE106 LYS107 ARG108 THR109 VAL110 ALA111 ALA112 PRO113 SER114 VAL115 PHE116 ILE117 PHE118 PRO119 PRO120 SER121 ASP122 GLU123 GLN124 LEU125 LYS126 SER127 GLY128 THR129 ALA130 SER131 VAL132 VAL133 CYS134 LEU135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 ARG142 GLU143 ALA144 LYS145 VAL146 GLN147 TRP148 LYS149 VAL150 ASP151 ASN152 ALA153 LEU154 GLN155 SER156 GLY157 ASN158 SER159 GLN160 GLU161 SER162 VAL163 THR164 GLU165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 LEU175 SER176 SER177 THR178 LEU179 THR180 LEU181 SER182 LYS183 ALA184 ASP185 TYR186 GLU187 LYS188 HIS189 LYS190 VAL191 TYR192 ALA193 CYS194 GLU195 VAL196 THR197 HIS198 GLN199 GLY200 LEU201 SER202 SER203 PRO204 VAL205 THR206 LYS207 SER208 PHE209 ASN210 ARG211 GLY212
Unit 4 VAL381 GLU382 CYS383 ASP384 PHE385 SER386 PRO387 LEU388 LEU389 SER390 GLY391 THR392 PRO393 PRO394 GLN395 VAL396 TYR397 ASN398 PHE399 LYS400 ARG401 LEU402 VAL403 PHE404 THR405 ASN406 CYS407 ASN408 TYR409 ASN410 LEU411 THR412 LYS413 LEU414 LEU415 SER416 LEU417 PHE418 SER419 VAL420 ASN421 ASP422 PHE423 THR424 CYS425 SER426 GLN427 ILE428 SER429 PRO430 ALA431 ALA432 ILE433 ALA434 SER435 ASN436 CYS437 TYR438 SER439 SER440 LEU441 ILE442 LEU443 ASP444 TYR445 PHE446 SER447 TYR448 PRO449 LEU450 SER451 MET452 LYS453 SER454 ASP455 LEU456 SER457 VAL458 SER459 SER460 ALA461 GLY462 PRO463 ILE464 SER465 GLN466 PHE467 ASN468 TYR469 LYS470 GLN471 SER472 PHE473 SER474 ASN475 PRO476 THR477 CYS478 LEU479 ILE480 LEU481 ALA482 THR483 VAL484 PRO485 HIS486 ASN487 LEU488 THR489 THR490 ILE491 THR492 LYS493 PRO494 LEU495 LYS496 TYR497 SER498 TYR499 ILE500 ASN501 LYS502 CYS503 SER504 ARG505 PHE506 LEU507 SER508 ASP509 ASP510 ARG511 THR512 GLU513 VAL514 PRO515 GLN516 LEU517 VAL518 ASN519 ALA520 ASN521 GLN522 TYR523 SER524 PRO525 CYS526 VAL527 SER528 ILE529 VAL530 PRO531 SER532 THR533 VAL534 TRP535 GLU536 ASP537 GLY538 ASP539 TYR540 TYR541 ARG542 LYS543 GLN544 LEU545 SER546 PRO547 LEU548 GLU549 GLY550 GLY551 GLY552 TRP553 LEU554 VAL555 ALA556 SER557 GLY558 SER559 THR560 VAL561 ALA562 MET563 THR564 GLU565 GLN566 LEU567 GLN568 MET569 GLY570 PHE571 GLY572 ILE573 THR574 VAL575 GLN576 TYR577 GLY578 THR579 ASP580 THR581 ASN582 SER583 VAL584 CYS585 PRO586 LYS587 LEU588 GLU589 PHE590 ALA591
Unit 5 GLN1 VAL2 GLN3 LEU4 VAL5 GLN6 SER7 GLY8 ALA9 GLU10 VAL11 LYS12 LYS13 PRO14 GLY15 SER16 SER17 VAL18 LYS19 VAL20 SER21 CYS22 LYS23 ALA24 SER25 GLY26 GLY27 THR28 PHE29 SER30 SER31 TYR32 ALA33 ILE34 SER35 TRP36 VAL37 ARG38 GLN39 ALA40 PRO41 GLY42 GLN43 GLY44 LEU45 GLU46 TRP47 MET48 GLY49 GLY50 ILE51 ILE52 PRO52A ILE53 PHE54 GLY55 THR56 ALA57 SER58 TYR59 ALA60 GLN61 LYS62 PHE63 GLN64 GLY65 ARG66 VAL67 THR68 ILE69 THR70 ALA71 ASP72 LYS73 SER74 THR75 SER76 THR77 ALA78 TYR79 MET80 GLU81 LEU82 SER82A SER82B LEU82C ARG83 SER84 GLU85 ASP86 THR87 ALA88 VAL89 TYR90 TYR91 CYS92 ALA93 ARG94 VAL95 GLY96 TYR97 CYS98 SER99 SER100 THR100A SER100B CYS100C ASN100D ARG100E GLY100F ALA100G PHE100H ASP101 ILE102 TRP103 GLY104 GLN105 GLY106 THR107 MET108 VAL109 THR110 VAL111 SER112 SER113 ALA114 SER115 THR116 LYS117 GLY118 PRO119 SER120 VAL121 PHE122 PRO123 LEU124 ALA125 PRO126 THR135 ALA136 ALA137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 ASP144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 VAL152 SER153 TRP154 ASN155 SER156 GLY157 ALA158 LEU159 THR160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 SER173 GLY174 LEU175 TYR176 SER177 LEU178 SER179 SER180 VAL181 VAL182 THR183 VAL184 PRO185 SER186 SER187 SER188 LEU189 GLY190 THR191 GLN192 THR193 TYR194 ILE195 CYS196 ASN197 VAL198 ASN199 HIS200 LYS201 PRO202 SER203 ASN204 THR205 LYS206 VAL207 ASP208 LYS209 LYS210 VAL211 GLU212 PRO213 LYS214
Unit 6 ASP1 ILE2 GLN3 LEU4 THR5 GLN6 SER7 PRO8 SER9 SER10 LEU11 SER12 ALA13 SER14 VAL15 GLY16 ASP17 ARG18 VAL19 THR20 ILE21 THR22 CYS23 ARG24 ALA25 SER26 GLN27 GLY28 ILE29 ARG30 ASN31 ASP32 LEU33 GLY34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 LYS42 ALA43 PRO44 LYS45 LEU46 LEU47 ILE48 TYR49 ALA50 ALA51 SER52 SER53 LEU54 GLN55 SER56 GLY57 VAL58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 ASP70 PHE71 THR72 LEU73 THR74 ILE75 SER76 SER77 LEU78 GLN79 PRO80 GLU81 ASP82 PHE83 ALA84 THR85 TYR86 TYR87 CYS88 GLN89 GLN90 LEU91 ASN92 SER93 TYR94 PRO95 LEU96 THR97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 VAL104 GLU105 ILE106 LYS107 ARG108 THR109 VAL110 ALA111 ALA112 PRO113 SER114 VAL115 PHE116 ILE117 PHE118 PRO119 PRO120 SER121 ASP122 GLU123 GLN124 LEU125 LYS126 SER127 GLY128 THR129 ALA130 SER131 VAL132 VAL133 CYS134 LEU135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 ARG142 GLU143 ALA144 LYS145 VAL146 GLN147 TRP148 LYS149 VAL150 GLN155 SER156 GLY157 ASN158 SER159 GLN160 GLU161 SER162 VAL163 THR164 GLU165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 LEU175 SER176 SER177 THR178 LEU179 THR180 LEU181 SER182 LYS183 ALA184 ASP185 TYR186 GLU187 LYS188 HIS189 LYS190 VAL191 TYR192 ALA193 CYS194 GLU195 VAL196 THR197 HIS198 GLN199 GLY200 LEU201 SER202 SER203 PRO204 VAL205 THR206 LYS207 SER208 PHE209 ASN210 ARG211
Ligands
Unit 7 NAG701 NAG702
Unit 8 GOL500 GOL501
Unit 9 NAG701 NAG702
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany