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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF NOROVIRUS GII.10 P DOMAIN IN COMPLEX WI
Keywords NANOBODY, VHH DOMAIN, NOROVIRUS, PROTRUDING DOMAIN, VIRAL PR
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4X7F     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CAPSID PROTEIN  A 307 2357 0
2  Protein   CAPSID PROTEIN  B 303 2295 0
3  Protein   NANO-25 NANOBODY  C 114 857 0
4  Protein   NANO-25 NANOBODY  D 112 821 0
5  Ligand   CAPSID PROTEIN  A 15 0 58
6  Ligand   CAPSID PROTEIN  B 9 0 37
7  Ligand   NANO-25 NANOBODY  C 2 0 9
8  Ligand   NANO-25 NANOBODY  D 1 0 4
9 Water     464 0 464
total       1327 6330 572

Proteins
Unit 1 LYS225 PRO226 PHE227 THR228 LEU229 PRO230 ILE231 LEU232 THR233 LEU234 GLY235 GLU236 LEU237 THR238 ASN239 SER240 ARG241 PHE242 PRO243 LEU244 PRO245 ILE246 ASP247 VAL248 LEU249 TYR250 THR251 ASN252 PRO253 ASN254 GLU255 SER256 ALA257 ILE258 VAL259 GLN260 CYS261 GLN262 ASN263 GLY264 ARG265 CYS266 THR267 LEU268 ASP269 GLY270 GLU271 LEU272 GLN273 GLY274 THR275 THR276 GLN277 LEU278 LEU279 PRO280 THR281 GLY282 ILE283 CYS284 ALA285 PHE286 ARG287 GLY288 LYS289 VAL290 THR291 GLN292 GLN293 VAL294 GLN295 ASP296 GLU297 HIS298 ARG299 GLY300 THR301 HIS302 TRP303 ASN304 MET305 THR306 VAL307 THR308 ASN309 LEU310 ASN311 GLY312 THR313 PRO314 PHE315 ASP316 PRO317 THR318 GLU319 ASP320 VAL321 PRO322 ALA323 PRO324 LEU325 GLY326 THR327 PRO328 ASP329 PHE330 SER331 GLY332 GLN333 ILE334 TYR335 GLY336 VAL337 ILE338 SER339 GLN340 ARG341 ASN342 THR343 ASN344 THR345 ASN351 LEU352 PRO353 ALA354 ASN355 ARG356 ALA357 HIS358 GLU359 ALA360 VAL361 ILE362 ALA363 THR364 TYR365 SER366 PRO367 LYS368 PHE369 THR370 PRO371 LYS372 LEU373 GLY374 ASN375 ILE376 GLN377 PHE378 SER379 THR380 TRP381 GLU382 THR383 GLN384 ASP385 VAL386 SER387 SER388 GLY389 GLN390 PRO391 THR392 LYS393 PHE394 THR395 PRO396 VAL397 GLY398 LEU399 ALA400 SER401 VAL402 ASP403 ALA404 ASN405 SER406 HIS407 PHE408 ASP409 GLN410 TRP411 THR412 LEU413 PRO414 SER415 TYR416 SER417 GLY418 THR421 LEU422 ASN423 MET424 ASN425 LEU426 ALA427 PRO428 SER429 VAL430 ALA431 PRO432 VAL433 PHE434 PRO435 GLY436 GLU437 CYS438 LEU439 LEU440 PHE441 PHE442 ARG443 SER444 PHE445 ILE446 PRO447 LEU448 LYS449 GLY450 GLY451 TYR452 GLY453 ASN454 PRO455 ALA456 ILE457 ASP458 CYS459 LEU460 MET461 PRO462 GLN463 GLU464 TRP465 VAL466 GLN467 HIS468 LEU469 TYR470 GLN471 GLU472 SER473 ALA474 PRO475 SER476 LEU477 SER478 ASP479 VAL480 ALA481 LEU482 VAL483 ARG484 TYR485 VAL486 ASN487 PRO488 GLU489 THR490 GLY491 ARG492 THR493 LEU494 PHE495 GLU496 ALA497 LYS498 LEU499 HIS500 ARG501 ASN502 GLY503 PHE504 LEU505 THR506 VAL507 ALA508 ARG509 ASN510 SER511 ALA512 GLY513 PRO514 VAL515 VAL516 ALA517 PRO518 THR519 ASN520 GLY521 TYR522 PHE523 ARG524 PHE525 ASP526 SER527 TRP528 VAL529 ASN530 GLN531 PHE532 TYR533 THR534 LEU535 ALA536 PRO537 MET538
Unit 2 SER224 LYS225 PRO226 PHE227 THR228 LEU229 PRO230 ILE231 LEU232 THR233 LEU234 GLY235 GLU236 LEU237 THR238 ASN239 SER240 ARG241 PHE242 PRO243 LEU244 PRO245 ILE246 ASP247 VAL248 LEU249 TYR250 THR251 ASN252 PRO253 ASN254 GLU255 SER256 ALA257 ILE258 VAL259 GLN260 CYS261 GLN262 ASN263 GLY264 ARG265 CYS266 THR267 LEU268 ASP269 GLY270 GLU271 LEU272 GLN273 GLY274 THR275 THR276 GLN277 LEU278 LEU279 PRO280 THR281 GLY282 ILE283 CYS284 ALA285 PHE286 ARG287 GLY288 LYS289 VAL290 THR291 GLN292 GLN293 VAL294 HIS298 ARG299 THR301 HIS302 TRP303 ASN304 MET305 THR306 VAL307 THR308 ASN309 LEU310 ASN311 GLY312 THR313 PRO314 PHE315 ASP316 PRO317 THR318 GLU319 ASP320 VAL321 PRO322 ALA323 PRO324 LEU325 GLY326 THR327 PRO328 ASP329 PHE330 SER331 GLY332 GLN333 ILE334 TYR335 GLY336 VAL337 ILE338 SER339 GLN340 ARG341 ASN342 THR343 LEU352 PRO353 ALA354 ASN355 ARG356 ALA357 HIS358 GLU359 ALA360 VAL361 ILE362 ALA363 THR364 TYR365 SER366 PRO367 LYS368 PHE369 THR370 PRO371 LYS372 LEU373 GLY374 ASN375 ILE376 GLN377 PHE378 SER379 THR380 TRP381 GLU382 THR383 GLN384 ASP385 VAL386 SER387 SER388 GLY389 GLN390 PRO391 THR392 LYS393 PHE394 THR395 PRO396 VAL397 GLY398 LEU399 ALA400 SER401 VAL402 ASP403 ALA404 ASN405 SER406 HIS407 PHE408 ASP409 GLN410 TRP411 THR412 LEU413 PRO414 SER415 TYR416 SER417 GLY418 ALA419 LEU420 THR421 LEU422 ASN423 MET424 ASN425 LEU426 ALA427 PRO428 SER429 VAL430 ALA431 PRO432 VAL433 PHE434 PRO435 GLY436 GLU437 CYS438 LEU439 LEU440 PHE441 PHE442 ARG443 SER444 PHE445 ILE446 PRO447 LEU448 LYS449 GLY450 GLY451 TYR452 GLY453 ASN454 PRO455 ALA456 ILE457 ASP458 CYS459 LEU460 MET461 PRO462 GLN463 GLU464 TRP465 VAL466 GLN467 HIS468 LEU469 TYR470 GLN471 GLU472 SER473 ALA474 PRO475 SER476 LEU477 SER478 ASP479 VAL480 ALA481 LEU482 VAL483 ARG484 TYR485 VAL486 ASN487 PRO488 GLU489 THR490 GLY491 ARG492 THR493 LEU494 PHE495 GLU496 ALA497 LYS498 LEU499 HIS500 ARG501 ASN502 GLY503 PHE504 LEU505 THR506 VAL507 ALA508 ARG509 ASN510 SER511 ALA512 GLY513 PRO514 VAL515 VAL516 ALA517 PRO518 THR519 ASN520 GLY521 TYR522 PHE523 ARG524 PHE525 ASP526 SER527 TRP528 VAL529 ASN530 GLN531 PHE532 TYR533 THR534 LEU535 ALA536 PRO537 MET538
Unit 3 ASP1 VAL2 GLN3 LEU4 VAL5 GLU6 SER7 GLY8 GLY9 GLY10 LEU11 VAL12 GLN13 PRO14 GLY15 GLY16 SER17 LEU18 ARG19 LEU20 SER21 CYS22 ALA23 ALA24 SER25 GLU26 SER27 ILE28 LEU29 SER30 PHE31 ASN32 HIS33 MET34 ALA35 TRP36 TYR37 ARG38 GLN39 GLY40 PRO41 GLY42 GLU43 GLN44 ARG45 GLU46 LEU47 VAL48 ALA49 VAL50 ILE51 THR52 ARG53 GLU54 GLY55 SER56 THR57 ASP58 TYR59 ALA60 ASP61 SER62 VAL63 LYS64 GLY65 ARG66 PHE67 THR68 ILE69 SER70 ARG71 ASP72 ASN73 ALA74 LYS75 ASN76 MET77 VAL78 TYR79 LEU80 LEU81 MET82 SER83 ASN84 LEU85 ARG86 PRO87 GLU88 ASP89 THR90 ALA91 VAL92 TYR93 TYR94 CYS95 ASN96 ARG97 GLY98 ILE99 SER100 ASN101 PRO102 TRP103 GLY104 GLN105 GLY106 THR107 GLN108 VAL109 THR110 VAL111 SER112 SER113 HIS114
Unit 4 ASP1 VAL2 GLN3 LEU4 VAL5 GLU6 SER7 GLY8 GLY9 GLY10 LEU11 VAL12 GLN13 PRO14 GLY15 GLY16 SER17 LEU18 ARG19 LEU20 SER21 CYS22 ALA23 ALA24 SER25 GLU26 SER27 ILE28 LEU29 SER30 PHE31 ASN32 HIS33 MET34 ALA35 TRP36 TYR37 ARG38 GLN39 GLY40 PRO41 GLY42 GLU43 GLN44 ARG45 GLU46 LEU47 VAL48 ALA49 VAL50 ILE51 THR52 ARG53 GLU54 GLY55 SER56 THR57 ASP58 TYR59 ALA60 ASP61 SER62 VAL63 LYS64 GLY65 ARG66 PHE67 THR68 ILE69 SER70 ARG71 ASP72 ASN73 ALA74 LYS75 ASN76 MET77 VAL78 TYR79 LEU80 LEU81 MET82 SER83 ASN84 LEU85 ARG86 PRO87 GLU88 ASP89 THR90 ALA91 VAL92 TYR93 TYR94 CYS95 ASN96 ARG97 GLY98 ILE99 SER100 ASN101 PRO102 TRP103 GLY104 GLN105 GLY106 THR107 GLN108 VAL109 THR110 VAL111 SER112

Ligands
Unit 5 NA601 EDO602 EDO603 EDO604 EDO605 EDO606 EDO607 EDO608 EDO609 EDO610 EDO611 EDO612 EDO613 EDO614 PO4615
Unit 6 EDO601 EDO602 EDO603 EDO604 EDO605 EDO606 EDO607 EDO608 IMD609
Unit 7 EDO201 IMD202
Unit 8 EDO201

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany