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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF P DOMAIN FROM NOROVIRUS STRAIN SAGA4 IN WITH HBGA TYPE LEA (TRIGLYCAN)
Keywords VIRAL CAPSID PROTEIN, PROTRUDING DOMAIN, VIRAL PROTEIN
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4WZL     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   VP1  A 308 4628 0
2  Protein   VP1  B 308 4632 0
3  Ligand    C 3 0 36
4  Ligand    D 3 0 36
5  Ligand   VP1  A 6 0 24
6  Ligand   VP1  B 7 0 28
7 Water     567 0 567
total       1202 9260 691

Proteins
Unit 1 GLY223 SER224 LYS225 PRO226 PHE227 THR228 VAL229 PRO230 ILE231 LEU232 THR233 VAL234 GLU235 GLU236 MET237 THR238 ASN239 SER240 ARG241 PHE242 PRO243 ILE244 PRO245 LEU246 GLU247 LYS248 LEU249 PHE250 THR251 GLY252 PRO253 SER254 GLY255 ALA256 PHE257 VAL258 VAL259 GLN260 PRO261 GLN262 ASN263 GLY264 ARG265 CYS266 THR267 THR268 ASP269 GLY270 VAL271 LEU272 LEU273 GLY274 THR275 THR276 GLN277 LEU278 SER279 PRO280 VAL281 ASN282 ILE283 CYS284 THR285 PHE286 ARG287 GLY288 ASP289 VAL290 THR291 HIS292 ILE293 ALA294 GLY295 SER296 ARG297 ASN298 TYR299 THR300 MET301 ASN302 LEU303 ALA304 SER305 LEU306 ASN307 TRP308 ASN309 ASN310 TYR311 ASP312 PRO313 THR314 GLU315 GLU316 ILE317 PRO318 ALA319 PRO320 LEU321 GLY322 THR323 PRO324 ASP325 PHE326 VAL327 GLY328 LYS329 ILE330 GLN331 GLY332 LEU333 LEU334 THR335 GLN336 THR337 THR338 LYS339 GLY340 ASP341 GLY342 SER343 THR344 ARG345 GLY346 HIS347 LYS348 ALA349 THR350 VAL351 TYR352 THR353 GLY354 SER355 ALA356 PRO357 PHE358 THR359 PRO360 LYS361 LEU362 GLY363 SER364 VAL365 GLN366 PHE367 SER368 THR369 ASP370 THR371 GLU372 ASN373 ASP374 PHE375 GLU376 THR377 HIS378 GLN379 ASN380 THR381 LYS382 PHE383 THR384 PRO385 VAL386 GLY387 VAL388 ILE389 GLN390 ASP391 GLY392 SER393 THR394 THR395 HIS396 ARG397 ASN398 GLU399 PRO400 GLN401 GLN402 TRP403 VAL404 LEU405 PRO406 SER407 TYR408 SER409 GLY410 ARG411 ASN412 VAL413 HIS414 ASN415 VAL416 HIS417 LEU418 ALA419 PRO420 ALA421 VAL422 ALA423 PRO424 THR425 PHE426 PRO427 GLY428 GLU429 GLN430 LEU431 LEU432 PHE433 PHE434 ARG435 SER436 THR437 MET438 PRO439 GLY440 CYS441 SER442 GLY443 TYR444 PRO445 ASN446 MET447 ASP448 LEU449 ASP450 CYS451 LEU452 LEU453 PRO454 GLN455 GLU456 TRP457 VAL458 GLN459 HIS460 PHE461 TYR462 GLN463 GLU464 ALA465 ALA466 PRO467 ALA468 GLN469 SER470 ASP471 VAL472 ALA473 LEU474 LEU475 ARG476 PHE477 VAL478 ASN479 PRO480 ASP481 THR482 GLY483 ARG484 VAL485 LEU486 PHE487 GLU488 CYS489 LYS490 LEU491 HIS492 LYS493 SER494 GLY495 TYR496 VAL497 THR498 VAL499 ALA500 HIS501 THR502 GLY503 GLN504 HIS505 ASP506 LEU507 VAL508 ILE509 PRO510 PRO511 ASN512 GLY513 TYR514 PHE515 ARG516 PHE517 ASP518 SER519 TRP520 VAL521 ASN522 GLN523 PHE524 TYR525 THR526 LEU527 ALA528 PRO529 MET530
Unit 2 GLY223 SER224 LYS225 PRO226 PHE227 THR228 VAL229 PRO230 ILE231 LEU232 THR233 VAL234 GLU235 GLU236 MET237 THR238 ASN239 SER240 ARG241 PHE242 PRO243 ILE244 PRO245 LEU246 GLU247 LYS248 LEU249 PHE250 THR251 GLY252 PRO253 SER254 GLY255 ALA256 PHE257 VAL258 VAL259 GLN260 PRO261 GLN262 ASN263 GLY264 ARG265 CYS266 THR267 THR268 ASP269 GLY270 VAL271 LEU272 LEU273 GLY274 THR275 THR276 GLN277 LEU278 SER279 PRO280 VAL281 ASN282 ILE283 CYS284 THR285 PHE286 ARG287 GLY288 ASP289 VAL290 THR291 HIS292 ILE293 ALA294 GLY295 SER296 ARG297 ASN298 TYR299 THR300 MET301 ASN302 LEU303 ALA304 SER305 LEU306 ASN307 TRP308 ASN309 ASN310 TYR311 ASP312 PRO313 THR314 GLU315 GLU316 ILE317 PRO318 ALA319 PRO320 LEU321 GLY322 THR323 PRO324 ASP325 PHE326 VAL327 GLY328 LYS329 ILE330 GLN331 GLY332 LEU333 LEU334 THR335 GLN336 THR337 THR338 LYS339 GLY340 ASP341 GLY342 SER343 THR344 ARG345 GLY346 HIS347 LYS348 ALA349 THR350 VAL351 TYR352 THR353 GLY354 SER355 ALA356 PRO357 PHE358 THR359 PRO360 LYS361 LEU362 GLY363 SER364 VAL365 GLN366 PHE367 SER368 THR369 ASP370 THR371 GLU372 ASN373 ASP374 PHE375 GLU376 THR377 HIS378 GLN379 ASN380 THR381 LYS382 PHE383 THR384 PRO385 VAL386 GLY387 VAL388 ILE389 GLN390 ASP391 GLY392 SER393 THR394 THR395 HIS396 ARG397 ASN398 GLU399 PRO400 GLN401 GLN402 TRP403 VAL404 LEU405 PRO406 SER407 TYR408 SER409 GLY410 ARG411 ASN412 VAL413 HIS414 ASN415 VAL416 HIS417 LEU418 ALA419 PRO420 ALA421 VAL422 ALA423 PRO424 THR425 PHE426 PRO427 GLY428 GLU429 GLN430 LEU431 LEU432 PHE433 PHE434 ARG435 SER436 THR437 MET438 PRO439 GLY440 CYS441 SER442 GLY443 TYR444 PRO445 ASN446 MET447 ASP448 LEU449 ASP450 CYS451 LEU452 LEU453 PRO454 GLN455 GLU456 TRP457 VAL458 GLN459 HIS460 PHE461 TYR462 GLN463 GLU464 ALA465 ALA466 PRO467 ALA468 GLN469 SER470 ASP471 VAL472 ALA473 LEU474 LEU475 ARG476 PHE477 VAL478 ASN479 PRO480 ASP481 THR482 GLY483 ARG484 VAL485 LEU486 PHE487 GLU488 CYS489 LYS490 LEU491 HIS492 LYS493 SER494 GLY495 TYR496 VAL497 THR498 VAL499 ALA500 HIS501 THR502 GLY503 GLN504 HIS505 ASP506 LEU507 VAL508 ILE509 PRO510 PRO511 ASN512 GLY513 TYR514 PHE515 ARG516 PHE517 ASP518 SER519 TRP520 VAL521 ASN522 GLN523 PHE524 TYR525 THR526 LEU527 ALA528 PRO529 MET530

Ligands
Unit 3 NDG1 GAL2 FUC3
Unit 4 NDG1 GAL2 FUC3
Unit 5 EDO601 EDO602 EDO603 EDO604 ACT605 ACT606
Unit 6 EDO601 EDO602 EDO603 EDO604 EDO605 ACT606 ACT607

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany