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Sequence, Chains, Asymmetric and Biological Units

Title LARP7 WRAPPING UP THE 3' HAIRPIN OF 7SK NON-CODING RNA (302-
Keywords RNA-BINDING PROTEIN, RNA RECOGNITION MOTIF, PHOSPHOPROTEIN, NUCLEUS, LA MOTIF
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

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Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   LA-RELATED PROTEIN 7  A 161 1261 0
2  Protein   LA-RELATED PROTEIN 7  B 161 1267 0
3  DNA/RNA    C 5 68 0
4  RNA    D 5 100 0
5 Water     4 0 5
total       336 2696 5

Proteins
Unit 1 SER29 ARG30 VAL31 LYS32 GLN33 VAL34 LEU35 ALA36 ASP37 ILE38 ALA39 LYS40 GLN41 VAL42 ASP43 PHE44 TRP45 PHE46 GLY47 ASP48 ALA49 ASN50 LEU51 HIS52 LYS53 ASP54 ARG55 PHE56 LEU57 ARG58 GLU59 GLN60 ILE61 GLU62 LYS63 SER64 ARG65 ASP66 GLY67 TYR68 VAL69 ASP70 ILE71 SER72 LEU73 LEU74 VAL75 SER76 PHE77 ASN78 LYS79 MET80 LYS81 LYS82 LEU83 THR84 THR85 ASP86 GLY87 LYS88 LEU89 ILE90 ALA91 ARG92 ALA93 LEU94 ARG95 SER96 SER97 ALA98 VAL99 VAL100 GLU101 LEU102 ASP103 LEU104 GLU105 GLY106 THR107 ARG108 ILE109 ARG110 ARG111 LYS112 LYS113 PRO114 LEU115 GLY116 GLU117 ARG118 PRO119 LYS120 ASP121 GLU122 ASP123 GLU124 ARG125 THR126 VAL127 TYR128 VAL129 GLU130 LEU131 LEU132 PRO133 LYS134 ASN135 VAL136 ASN137 HIS138 SER139 TRP140 ILE141 GLU142 ARG143 VAL144 PHE145 GLY146 LYS147 CYS148 GLY149 ASN150 VAL151 VAL152 TYR153 ILE154 SER155 ILE156 PRO157 HIS158 TYR159 LYS160 SER161 THR162 GLY163 ASP164 PRO165 LYS166 GLY167 PHE168 ALA169 PHE170 VAL171 GLU172 PHE173 GLU174 THR175 LYS176 GLU177 GLN178 ALA179 ALA180 LYS181 ALA182 ILE183 GLU184 PHE185 LEU186 ASN187 ASN188 PRO189
Unit 2 SER29 ARG30 VAL31 LYS32 GLN33 VAL34 LEU35 ALA36 ASP37 ILE38 ALA39 LYS40 GLN41 VAL42 ASP43 PHE44 TRP45 PHE46 GLY47 ASP48 ALA49 ASN50 LEU51 HIS52 LYS53 ASP54 ARG55 PHE56 LEU57 ARG58 GLU59 GLN60 ILE61 GLU62 LYS63 SER64 ARG65 ASP66 GLY67 TYR68 VAL69 ASP70 ILE71 SER72 LEU73 LEU74 VAL75 SER76 PHE77 ASN78 LYS79 MET80 LYS81 LYS82 LEU83 THR84 THR85 ASP86 GLY87 LYS88 LEU89 ILE90 ALA91 ARG92 ALA93 LEU94 ARG95 SER96 SER97 ALA98 VAL99 VAL100 GLU101 LEU102 ASP103 LEU104 GLU105 GLY106 THR107 ARG108 ILE109 ARG110 ARG111 LYS112 LYS113 PRO114 LEU115 GLY116 GLU117 ARG118 PRO119 LYS120 ASP121 GLU122 ASP123 GLU124 ARG125 THR126 VAL127 TYR128 VAL129 GLU130 LEU131 LEU132 PRO133 LYS134 ASN135 VAL136 ASN137 HIS138 SER139 TRP140 ILE141 GLU142 ARG143 VAL144 PHE145 GLY146 LYS147 CYS148 GLY149 ASN150 VAL151 VAL152 TYR153 ILE154 SER155 ILE156 PRO157 HIS158 TYR159 LYS160 SER161 THR162 GLY163 ASP164 PRO165 LYS166 GLY167 PHE168 ALA169 PHE170 VAL171 GLU172 PHE173 GLU174 THR175 LYS176 GLU177 GLN178 ALA179 ALA180 LYS181 ALA182 ILE183 GLU184 PHE185 LEU186 ASN187 ASN188 PRO189

Nucleic acids
Unit 3 C-5 U-4 U-3 U-2 U-1
Unit 4 C-5 U-4 U-3 U-2 U-1

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany