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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTALLOGRAPHIC STRUCTURE OF A DODECAMERIC RNA-DNA HYBRID
Keywords RNA, DNA, HYBRID, DUPLEX, RNA-DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4WKJ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    D 12 249 0
2  Other macromolecule    E 12 246 0
3  RNA    A 12 249 0
4  Other macromolecule    B 12 246 0
5  RNA    C 12 249 0
6  Other macromolecule    F 12 246 0
7  RNA    G 12 249 0
8  Other macromolecule    H 12 246 0
9  Ligand    F 1 0 1
10 Water     1 0 1
total       98 1980 2
Nucleic acids
Unit 1 G1 A2 C3 A4 C5 C6 U7 G8 A9 U10 U11 C12
Unit 3 G1 A2 C3 A4 C5 C6 U7 G8 A9 U10 U11 C12
Unit 5 G1 A2 C3 A4 C5 C6 U7 G8 A9 U10 U11 C12
Unit 7 G1 A2 C3 A4 C5 C6 U7 G8 A9 U10 U11 C12
Other macromolecules
Unit 2 DG1 DA2 DA3 DT4 DC5 DA6 DG7 DG8 DT9 DG10 DT11 DC12
Unit 4 DG1 DA2 DA3 DT4 DC5 DA6 DG7 DG8 DT9 DG10 DT11 DC12
Unit 6 DG1 DA2 DA3 DT4 DC5 DA6 DG7 DG8 DT9 DG10 DT11 DC12
Unit 8 DG1 DA2 DA3 DT4 DC5 DA6 DG7 DG8 DT9 DG10 DT11 DC12
Ligands
Unit 9 MG101
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany