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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF NON-DISCRIMINATING ASPARTYL-TRNA SYNTHE PSEUDOMONAS AERUGINOSA COMPLEXED WITH TRNA(ASN) AND ASPARTI
Keywords NON-DISCRIMINATING ASPRS, TRNA, AMINOACYLATION, LIGASE-RNA C
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4WJ4     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ASPARTATE--TRNA(ASP/ASN) LIGASE  A 585 4614 0
2  RNA    B 76 1622 0
3  Protein   ASPARTATE--TRNA(ASP/ASN) LIGASE  A 1 0 9
total       662 6236 9

Proteins
Unit 1 MET2 ARG3 SER4 HIS5 TYR6 CYS7 GLY8 GLN9 LEU10 ASN11 GLU12 SER13 LEU14 ASP15 GLY16 GLN17 GLU18 VAL19 THR20 LEU21 CYS22 GLY23 TRP24 VAL25 HIS26 ARG27 ARG28 ARG29 ASP30 HIS31 GLY32 GLY33 VAL34 ILE35 PHE36 LEU37 ASP38 VAL39 ARG40 ASP41 ARG42 GLU43 GLY44 LEU45 ALA46 GLN47 VAL48 VAL49 PHE50 ASP51 PRO52 ASP53 ARG54 ALA55 GLU56 THR57 PHE58 ALA59 LYS60 ALA61 ASP62 ARG63 VAL64 ARG65 SER66 GLU67 PHE68 VAL69 VAL70 LYS71 ILE72 THR73 GLY74 LYS75 VAL76 ARG77 LEU78 ARG79 PRO80 GLU81 GLY82 ALA83 ARG84 ASN85 PRO86 ASN87 MET88 ALA89 SER90 GLY91 SER92 ILE93 GLU94 VAL95 LEU96 GLY97 TYR98 GLU99 LEU100 GLU101 VAL102 LEU103 ASN104 GLN105 ALA106 GLU107 THR108 PRO109 PRO110 PHE111 PRO112 LEU113 ASP114 GLU115 TYR116 SER117 ASP118 VAL119 GLY120 GLU121 GLU122 THR123 ARG124 LEU125 ARG126 TYR127 ARG128 PHE129 ILE130 ASP131 LEU132 ARG133 ARG134 PRO135 GLU136 MET137 ALA138 ALA139 LYS140 LEU141 LYS142 LEU143 ARG144 ALA145 ARG146 ILE147 THR148 SER149 SER150 ILE151 ARG152 ARG153 TYR154 LEU155 ASP156 ASP157 ASN158 GLY159 PHE160 LEU161 ASP162 VAL163 GLU164 THR165 PRO166 ILE167 LEU168 GLY169 ARG170 PRO171 THR172 PRO173 GLU174 GLY175 ALA176 ARG177 ASP178 TYR179 LEU180 VAL181 PRO182 SER183 ARG184 THR185 TYR186 PRO187 GLY188 HIS189 PHE190 PHE191 ALA192 LEU193 PRO194 GLN195 SER196 PRO197 GLN198 LEU199 PHE200 LYS201 GLN202 LEU203 LEU204 MET205 VAL206 ALA207 GLY208 PHE209 ASP210 ARG211 TYR212 TYR213 GLN214 ILE215 ALA216 LYS217 CYS218 PHE219 ARG220 ASP221 GLU222 ASP223 LEU224 ARG225 ALA226 ASP227 ARG228 GLN229 PRO230 GLU231 PHE232 THR233 GLN234 ILE235 ASP236 ILE237 GLU238 THR239 SER240 PHE241 LEU242 ASP243 GLU244 SER245 ASP246 ILE247 ILE248 GLY249 ILE250 THR251 GLU252 LYS253 MET254 VAL255 ARG256 GLN257 LEU258 PHE259 LYS260 GLU261 VAL262 LEU263 ASP264 VAL265 GLU266 PHE267 ASP268 GLU269 PHE270 PRO271 HIS272 MET273 PRO274 PHE275 GLU276 GLU277 ALA278 MET279 ARG280 ARG281 TYR282 GLY283 SER284 ASP285 LYS286 PRO287 ASP288 LEU289 ARG290 ILE291 PRO292 LEU293 GLU294 LEU295 VAL296 ASP297 VAL298 ALA299 ASP300 GLN301 LEU302 LYS303 GLU304 VAL305 GLU306 PHE307 LYS308 VAL309 PHE310 SER311 GLY312 PRO313 ALA314 ASN315 ASP316 PRO317 LYS318 GLY319 ARG320 VAL321 ALA322 ALA323 LEU324 ARG325 VAL326 PRO327 GLY328 ALA329 ALA330 SER331 MET332 PRO333 ARG334 SER335 GLN336 ILE337 ASP338 ASP339 TYR340 THR341 LYS342 PHE343 VAL344 GLY345 ILE346 TYR347 GLY348 ALA349 LYS350 GLY351 LEU352 ALA353 TYR354 ILE355 LYS356 VAL357 ASN358 GLU359 ARG360 ALA361 LYS362 GLY363 VAL364 GLU365 GLY366 LEU367 GLN368 SER369 PRO370 ILE371 VAL372 LYS373 PHE374 ILE375 PRO376 GLU377 ALA378 ASN379 LEU380 ASN381 VAL382 ILE383 LEU384 ASP385 ARG386 VAL387 GLY388 ALA389 VAL390 ASP391 GLY392 ASP393 ILE394 VAL395 PHE396 PHE397 GLY398 ALA399 ASP400 LYS401 ALA402 LYS403 ILE404 VAL405 CYS406 ASP407 ALA408 LEU409 GLY410 ALA411 LEU412 ARG413 ILE414 LYS415 VAL416 GLY417 HIS418 ASP419 LEU420 LYS421 LEU422 LEU423 THR424 ARG425 GLU426 TRP427 ALA428 PRO429 MET430 TRP431 VAL432 VAL433 ASP434 PHE435 PRO436 MET437 PHE438 GLU439 GLU440 ASN441 ASP442 ASP443 GLY444 SER445 LEU446 SER447 ALA448 LEU449 HIS450 HIS451 PRO452 PHE453 THR454 SER455 PRO456 LYS457 CYS458 THR459 PRO460 ALA461 GLU462 LEU463 GLU464 ALA465 ASN466 PRO467 GLY468 ALA469 ALA470 LEU471 SER472 ARG473 ALA474 TYR475 ASP476 MET477 VAL478 LEU479 ASN480 GLY481 THR482 GLU483 LEU484 GLY485 GLY486 GLY487 SER488 ILE489 ARG490 ILE491 HIS492 ASP493 LYS494 SER495 MET496 GLN497 GLN498 ALA499 VAL500 PHE501 ARG502 VAL503 LEU504 GLY505 ILE506 ASP507 GLU508 ALA509 GLU510 GLN511 GLU512 GLU513 LYS514 PHE515 GLY516 PHE517 LEU518 LEU519 ASP520 ALA521 LEU522 LYS523 TYR524 GLY525 ALA526 PRO527 PRO528 HIS529 GLY530 GLY531 LEU532 ALA533 PHE534 GLY535 LEU536 ASP537 ARG538 LEU539 VAL540 MET541 LEU542 MET543 THR544 GLY545 ALA546 SER547 SER548 ILE549 ARG550 GLU551 VAL552 ILE553 ALA554 PHE555 PRO556 LYS557 THR558 GLN559 SER560 ALA561 GLY562 ASP563 VAL564 MET565 THR566 GLN567 ALA568 PRO569 GLY570 SER571 VAL572 ASP573 GLY574 LYS575 ALA576 LEU577 ARG578 GLU579 LEU580 HIS581 ILE582 ARG583 LEU584 ARG585 GLU586
Unit 3 ASP600

Nucleic acids
Unit 2 U1 C2 C3 G4 C5 G6 A7 U8 A9 G10 C11 U12 C13 A14 G15 U16 C17 G18 G19 U20 A21 G22 A23 G24 C25 A26 A27 A28 U29 G30 A31 C32 U33 G34 U35 U36 A37 A38 U39 C40 A41 U42 U43 G44 G45 G46 U47 C48 C49 C50 U51 G52 G53 U54 U55 C56 G57 A58 G59 U60 C61 C62 A63 G64 G65 U66 C67 G68 C69 G70 G71 A72 G73 C74 C75 A76

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany