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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HUMAN NEUTRAL CERAMIDASE WITH ZN-BOUND
Keywords CERAMIDASE, AMIDASE, ZINC, PHOSPHATE, HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4WGK     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   NEUTRAL CERAMIDASE  A 670 5190 0
2  Protein   NEUTRAL CERAMIDASE  B 672 5211 0
3  Ligand    C 2 0 28
4  Ligand    D 3 0 39
5  Ligand    E 2 0 28
6  Ligand   NEUTRAL CERAMIDASE  A 7 0 61
7  Ligand   NEUTRAL CERAMIDASE  B 11 0 84
8 Water     494 0 494
total       1861 10401 734
Proteins
Unit 1 SER100 GLY101 TYR102 HIS103 ILE104 GLY105 VAL106 GLY107 ARG108 ALA109 ASP110 CYS111 THR112 GLY113 GLN114 VAL115 ALA116 ASP117 ILE118 ASN119 LEU120 MET121 GLY122 TYR123 GLY124 LYS125 SER126 GLY127 GLN128 ASN129 ALA130 GLN131 GLY132 ILE133 LEU134 THR135 ARG136 LEU137 TYR138 SER139 ARG140 ALA141 PHE142 ILE143 MET144 ALA145 GLU146 PRO147 ASP148 GLY149 SER150 ASN151 ARG152 THR153 VAL154 PHE155 VAL156 SER157 ILE158 ASP159 ILE160 GLY161 MET162 VAL163 SER164 GLN165 ARG166 LEU167 ARG168 LEU169 GLU170 VAL171 LEU172 ASN173 ARG174 LEU175 GLN176 SER177 LYS178 TYR179 GLY180 SER181 LEU182 TYR183 ARG184 ARG185 ASP186 ASN187 VAL188 ILE189 LEU190 SER191 GLY192 THR193 HIS194 THR195 HIS196 SER197 GLY198 PRO199 ALA200 GLY201 TYR202 PHE203 GLN204 TYR205 THR206 VAL207 PHE208 VAL209 ILE210 ALA211 SER212 GLU213 GLY214 PHE215 SER216 ASN217 GLN218 THR219 PHE220 GLN221 HIS222 MET223 VAL224 THR225 GLY226 ILE227 LEU228 LYS229 SER230 ILE231 ASP232 ILE233 ALA234 HIS235 THR236 ASN237 MET238 LYS239 PRO240 GLY241 LYS242 ILE243 PHE244 ILE245 ASN246 LYS247 GLY248 ASN249 VAL250 ASP251 GLY252 VAL253 GLN254 ILE255 ASN256 ARG257 SER258 PRO259 TYR260 SER261 TYR262 LEU263 GLN264 ASN265 PRO266 GLN267 SER268 GLU269 ARG270 ALA271 ARG272 TYR273 SER274 SER275 ASN276 THR277 ASP278 LYS279 GLU280 MET281 ILE282 VAL283 LEU284 LYS285 MET286 VAL287 ASP288 LEU289 ASN290 GLY291 ASP292 ASP293 LEU294 GLY295 LEU296 ILE297 SER298 TRP299 PHE300 ALA301 ILE302 HIS303 PRO304 VAL305 SER306 MET307 ASN308 ASN309 SER310 ASN311 HIS312 LEU313 VAL314 ASN315 SER316 ASP317 ASN318 VAL319 GLY320 TYR321 ALA322 SER323 TYR324 LEU325 LEU326 GLU327 GLN328 GLU329 LYS330 ASN331 LYS332 GLY333 TYR334 LEU335 PRO336 GLY337 GLN338 GLY339 PRO340 PHE341 VAL342 ALA343 ALA344 PHE345 ALA346 SER347 SER348 ASN349 LEU350 GLY351 ASP352 VAL353 SER354 PRO355 ASN356 ILE357 LEU358 GLY359 PRO360 ARG361 CYS362 ILE363 ASN364 THR365 GLY366 GLU367 SER368 CYS369 ASP370 ASN371 ALA372 ASN373 SER374 THR375 CYS376 PRO377 ILE378 GLY379 GLY380 PRO381 SER382 MET383 CYS384 ILE385 ALA386 LYS387 GLY388 PRO389 GLY390 GLN391 ASP392 MET393 PHE394 ASP395 SER396 THR397 GLN398 ILE399 ILE400 GLY401 ARG402 ALA403 MET404 TYR405 GLN406 ARG407 ALA408 LYS409 GLU410 LEU411 TYR412 ALA413 SER414 ALA415 SER416 GLN417 GLU418 VAL419 THR420 GLY421 PRO422 LEU423 ALA424 SER425 ALA426 HIS427 GLN428 TRP429 VAL430 ASP431 MET432 THR433 ASP434 VAL435 THR436 VAL437 TRP438 LEU439 ASN440 SER441 THR442 HIS443 ALA444 SER445 LYS446 THR447 CYS448 LYS449 PRO450 ALA451 LEU452 GLY453 TYR454 SER455 PHE456 ALA457 ALA458 GLY459 THR460 ILE461 ASP462 GLY463 VAL464 GLY465 GLY466 LEU467 ASN468 PHE469 THR470 GLN471 GLY472 LYS473 THR474 GLU475 GLY476 ASP477 PRO478 PHE479 TRP480 ASP481 THR482 ILE483 ARG484 ASP485 GLN486 ILE487 LEU488 GLY489 LYS490 PRO491 SER492 GLU493 GLU494 ILE495 LYS496 GLU497 CYS498 HIS499 LYS500 PRO501 LYS502 PRO503 ILE504 LEU505 LEU506 HIS507 THR508 GLY509 GLU510 LEU511 SER512 LYS513 PRO514 HIS515 PRO516 TRP517 HIS518 PRO519 ASP520 ILE521 VAL522 ASP523 VAL524 GLN525 ILE526 ILE527 THR528 LEU529 GLY530 SER531 LEU532 ALA533 ILE534 THR535 ALA536 ILE537 PRO538 GLY539 GLU540 PHE541 THR542 THR543 MET544 SER545 GLY546 ARG547 ARG548 LEU549 ARG550 GLU551 ALA552 VAL553 GLN554 ALA555 GLU556 PHE557 ALA558 SER559 HIS560 GLY561 MET562 GLN563 ASN564 MET565 THR566 VAL567 VAL568 ILE569 SER570 GLY571 LEU572 CYS573 ASN574 VAL575 TYR576 THR577 HIS578 TYR579 ILE580 THR581 THR582 TYR583 GLU584 GLU585 TYR586 GLN587 ALA588 GLN589 ARG590 TYR591 GLU592 ALA593 ALA594 SER595 THR596 ILE597 TYR598 GLY599 PRO600 HIS601 THR602 LEU603 SER604 ALA605 TYR606 ILE607 GLN608 LEU609 PHE610 ARG611 ASN612 LEU613 ALA614 LYS615 ALA616 ILE617 ALA618 THR619 ASP620 THR621 VAL622 ALA623 ASN624 LEU625 SER626 ARG627 GLY628 PRO629 GLU630 PRO631 PRO632 PHE633 PHE634 LYS635 GLN636 ILE642 PRO643 SER644 ILE645 VAL646 ASP647 ARG648 ALA649 PRO650 LYS651 GLY652 ARG653 THR654 PHE655 GLY656 ASP657 VAL658 LEU659 GLN660 PRO661 ALA662 LYS663 PRO664 GLU665 TYR666 ARG667 VAL668 GLY669 GLU670 VAL671 ALA672 GLU673 VAL674 ILE675 PHE676 VAL677 GLY678 ALA679 ASN680 PRO681 LYS682 ASN683 SER684 VAL685 GLN688 THR689 HIS690 GLN691 THR692 PHE693 LEU694 THR695 VAL696 GLU697 LYS698 TYR699 GLU700 ALA701 THR702 SER703 THR704 SER705 TRP706 GLN707 ILE708 VAL709 CYS710 ASN711 ASP712 ALA713 SER714 TRP715 GLU716 THR717 ARG718 PHE719 TYR720 TRP721 HIS722 LYS723 GLY724 LEU725 LEU726 GLY727 LEU728 SER729 ASN730 ALA731 THR732 VAL733 GLU734 TRP735 HIS736 ILE737 PRO738 ASP739 THR740 ALA741 GLN742 PRO743 GLY744 ILE745 TYR746 ARG747 ILE748 ARG749 TYR750 PHE751 GLY752 HIS753 ASN754 ARG755 LYS756 GLN757 PRO762 ALA763 VAL764 ILE765 LEU766 SER767 PHE768 GLU769 GLY770 THR771 SER772 PRO773 ALA774 PHE775 GLU776 VAL777 VAL778 THR779 ILE780
Unit 2 PHE99 SER100 GLY101 TYR102 HIS103 ILE104 GLY105 VAL106 GLY107 ARG108 ALA109 ASP110 CYS111 THR112 GLY113 GLN114 VAL115 ALA116 ASP117 ILE118 ASN119 LEU120 MET121 GLY122 TYR123 GLY124 LYS125 SER126 GLY127 GLN128 ASN129 ALA130 GLN131 GLY132 ILE133 LEU134 THR135 ARG136 LEU137 TYR138 SER139 ARG140 ALA141 PHE142 ILE143 MET144 ALA145 GLU146 PRO147 ASP148 GLY149 SER150 ASN151 ARG152 THR153 VAL154 PHE155 VAL156 SER157 ILE158 ASP159 ILE160 GLY161 MET162 VAL163 SER164 GLN165 ARG166 LEU167 ARG168 LEU169 GLU170 VAL171 LEU172 ASN173 ARG174 LEU175 GLN176 SER177 LYS178 TYR179 GLY180 SER181 LEU182 TYR183 ARG184 ARG185 ASP186 ASN187 VAL188 ILE189 LEU190 SER191 GLY192 THR193 HIS194 THR195 HIS196 SER197 GLY198 PRO199 ALA200 GLY201 TYR202 PHE203 GLN204 TYR205 THR206 VAL207 PHE208 VAL209 ILE210 ALA211 SER212 GLU213 GLY214 PHE215 SER216 ASN217 GLN218 THR219 PHE220 GLN221 HIS222 MET223 VAL224 THR225 GLY226 ILE227 LEU228 LYS229 SER230 ILE231 ASP232 ILE233 ALA234 HIS235 THR236 ASN237 MET238 LYS239 PRO240 GLY241 LYS242 ILE243 PHE244 ILE245 ASN246 LYS247 GLY248 ASN249 VAL250 ASP251 GLY252 VAL253 GLN254 ILE255 ASN256 ARG257 SER258 PRO259 TYR260 SER261 TYR262 LEU263 GLN264 ASN265 PRO266 GLN267 SER268 GLU269 ARG270 ALA271 ARG272 TYR273 SER274 SER275 ASN276 THR277 ASP278 LYS279 GLU280 MET281 ILE282 VAL283 LEU284 LYS285 MET286 VAL287 ASP288 LEU289 ASN290 GLY291 ASP292 ASP293 LEU294 GLY295 LEU296 ILE297 SER298 TRP299 PHE300 ALA301 ILE302 HIS303 PRO304 VAL305 SER306 MET307 ASN308 ASN309 SER310 ASN311 HIS312 LEU313 VAL314 ASN315 SER316 ASP317 ASN318 VAL319 GLY320 TYR321 ALA322 SER323 TYR324 LEU325 LEU326 GLU327 GLN328 GLU329 LYS330 ASN331 LYS332 GLY333 TYR334 LEU335 PRO336 GLY337 GLN338 GLY339 PRO340 PHE341 VAL342 ALA343 ALA344 PHE345 ALA346 SER347 SER348 ASN349 LEU350 GLY351 ASP352 VAL353 SER354 PRO355 ASN356 ILE357 LEU358 GLY359 PRO360 ARG361 CYS362 ILE363 ASN364 THR365 GLY366 GLU367 SER368 CYS369 ASP370 ASN371 ALA372 ASN373 SER374 THR375 CYS376 PRO377 ILE378 GLY379 GLY380 PRO381 SER382 MET383 CYS384 ILE385 ALA386 LYS387 GLY388 PRO389 GLY390 GLN391 ASP392 MET393 PHE394 ASP395 SER396 THR397 GLN398 ILE399 ILE400 GLY401 ARG402 ALA403 MET404 TYR405 GLN406 ARG407 ALA408 LYS409 GLU410 LEU411 TYR412 ALA413 SER414 ALA415 SER416 GLN417 GLU418 VAL419 THR420 GLY421 PRO422 LEU423 ALA424 SER425 ALA426 HIS427 GLN428 TRP429 VAL430 ASP431 MET432 THR433 ASP434 VAL435 THR436 VAL437 TRP438 LEU439 ASN440 SER441 THR442 HIS443 ALA444 SER445 LYS446 THR447 CYS448 LYS449 PRO450 ALA451 LEU452 GLY453 TYR454 SER455 PHE456 ALA457 ALA458 GLY459 THR460 ILE461 ASP462 GLY463 VAL464 GLY465 GLY466 LEU467 ASN468 PHE469 THR470 GLN471 GLY472 LYS473 THR474 GLU475 GLY476 ASP477 PRO478 PHE479 TRP480 ASP481 THR482 ILE483 ARG484 ASP485 GLN486 ILE487 LEU488 GLY489 LYS490 PRO491 SER492 GLU493 GLU494 ILE495 LYS496 GLU497 CYS498 HIS499 LYS500 PRO501 LYS502 PRO503 ILE504 LEU505 LEU506 HIS507 THR508 GLY509 GLU510 LEU511 SER512 LYS513 PRO514 HIS515 PRO516 TRP517 HIS518 PRO519 ASP520 ILE521 VAL522 ASP523 VAL524 GLN525 ILE526 ILE527 THR528 LEU529 GLY530 SER531 LEU532 ALA533 ILE534 THR535 ALA536 ILE537 PRO538 GLY539 GLU540 PHE541 THR542 THR543 MET544 SER545 GLY546 ARG547 ARG548 LEU549 ARG550 GLU551 ALA552 VAL553 GLN554 ALA555 GLU556 PHE557 ALA558 SER559 HIS560 GLY561 MET562 GLN563 ASN564 MET565 THR566 VAL567 VAL568 ILE569 SER570 GLY571 LEU572 CYS573 ASN574 VAL575 TYR576 THR577 HIS578 TYR579 ILE580 THR581 THR582 TYR583 GLU584 GLU585 TYR586 GLN587 ALA588 GLN589 ARG590 TYR591 GLU592 ALA593 ALA594 SER595 THR596 ILE597 TYR598 GLY599 PRO600 HIS601 THR602 LEU603 SER604 ALA605 TYR606 ILE607 GLN608 LEU609 PHE610 ARG611 ASN612 LEU613 ALA614 LYS615 ALA616 ILE617 ALA618 THR619 ASP620 THR621 VAL622 ALA623 ASN624 LEU625 SER626 ARG627 GLY628 PRO629 GLU630 PRO631 PRO632 PHE633 PHE634 LYS635 GLN636 LEU637 ILE638 PRO643 SER644 ILE645 VAL646 ASP647 ARG648 ALA649 PRO650 LYS651 GLY652 ARG653 THR654 PHE655 GLY656 ASP657 VAL658 LEU659 GLN660 PRO661 ALA662 LYS663 PRO664 GLU665 TYR666 ARG667 VAL668 GLY669 GLU670 VAL671 ALA672 GLU673 VAL674 ILE675 PHE676 VAL677 GLY678 ALA679 ASN680 PRO681 LYS682 ASN683 SER684 VAL685 GLN686 ASN687 GLN688 THR689 HIS690 GLN691 THR692 PHE693 LEU694 THR695 VAL696 GLU697 LYS698 TYR699 GLU700 ALA701 THR702 SER703 THR704 SER705 TRP706 GLN707 ILE708 VAL709 CYS710 ASN711 ASP712 ALA713 SER714 TRP715 GLU716 THR717 ARG718 PHE719 TYR720 TRP721 HIS722 LYS723 GLY724 LEU725 LEU726 GLY727 LEU728 SER729 ASN730 ALA731 THR732 VAL733 GLU734 TRP735 HIS736 ILE737 PRO738 ASP739 THR740 ALA741 GLN742 PRO743 GLY744 ILE745 TYR746 ARG747 ILE748 ARG749 TYR750 PHE751 GLY752 HIS753 ASN754 ARG755 LYS756 GLN757 ALA763 VAL764 ILE765 LEU766 SER767 PHE768 GLU769 GLY770 THR771 SER772 PRO773 ALA774 PHE775 GLU776 VAL777 VAL778 THR779
Ligands
Unit 3 NAG1 NAG2
Unit 4 NAG1 NAG2 BMA3
Unit 5 NAG1 NAG2
Unit 6 ZN801 CA802 NAG805 NAG806 PO4810 CIT811 CIT812
Unit 7 ZN801 CA802 NAG803 NAG806 NAG807 PO4808 CL809 CIT810 CIT811 EDO812 EDO813
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany