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Sequence, Chains, Asymmetric and Biological Units

Title JC POLYOMAVIRUS VP1 FIVE-FOLD PORE MUTANT P223M
Keywords BETA-SANDWICH, JELLY-ROLL, VIRAL MAJOR CAPSID PROTEIN, FIVE- PORE, VIRAL PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4WE0     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   MAJOR CAPSID PROTEIN VP1  A 259 2019 0
2  Protein   MAJOR CAPSID PROTEIN VP1  B 258 2008 0
3  Protein   MAJOR CAPSID PROTEIN VP1  C 256 1993 0
4  Protein   MAJOR CAPSID PROTEIN VP1  D 257 1999 0
5  Protein   MAJOR CAPSID PROTEIN VP1  E 258 2012 0
6  Ligand   MAJOR CAPSID PROTEIN VP1  A 1 0 6
7  Ligand   MAJOR CAPSID PROTEIN VP1  B 1 0 6
8  Ligand   MAJOR CAPSID PROTEIN VP1  C 2 0 10
9  Ligand   MAJOR CAPSID PROTEIN VP1  D 2 0 10
10  Ligand   MAJOR CAPSID PROTEIN VP1  E 1 0 6
11 Water     530 0 530
total       1825 10031 568
Proteins
Unit 1 VAL24 GLU25 VAL26 LEU27 GLU28 VAL29 LYS30 THR31 GLY32 VAL33 ASP34 SER35 ILE36 THR37 GLU38 VAL39 GLU40 CYS41 PHE42 LEU43 THR44 PRO45 GLU46 MET47 GLY48 ASP49 PRO50 ASP51 GLU52 HIS53 LEU54 ARG55 GLY56 PHE57 SER58 LYS59 SER60 ILE61 SER62 ILE63 SER64 ASP65 THR66 PHE67 GLU68 SER69 ASP70 SER71 PRO72 ASN73 ARG74 ASP75 MET76 LEU77 PRO78 CYS79 TYR80 SER81 VAL82 ALA83 ARG84 ILE85 PRO86 LEU87 PRO88 ASN89 LEU90 ASN91 ILE99 LEU100 MET101 TRP102 GLU103 ALA104 VAL105 THR106 LEU107 LYS108 THR109 GLU110 VAL111 ILE112 GLY113 VAL114 THR115 SER116 LEU117 MET118 ASN119 VAL120 HIS121 SER122 ASN123 GLY124 GLN125 ALA126 THR127 HIS128 ASP129 ASN130 GLY131 ALA132 GLY133 LYS134 PRO135 VAL136 GLN137 GLY138 THR139 SER140 PHE141 HIS142 PHE143 PHE144 SER145 VAL146 GLY147 GLY148 GLU149 ALA150 LEU151 GLU152 LEU153 GLN154 GLY155 VAL156 LEU157 PHE158 ASN159 TYR160 ARG161 THR162 LYS163 TYR164 PRO165 ASP166 GLY167 THR168 ILE169 PHE170 PRO171 LYS172 ASN173 ALA174 THR175 VAL176 GLN177 SER178 GLN179 VAL180 MET181 ASN182 THR183 GLU184 HIS185 LYS186 ALA187 TYR188 LEU189 ASP190 LYS191 ASN192 LYS193 ALA194 TYR195 PRO196 VAL197 GLU198 CYS199 TRP200 VAL201 PRO202 ASP203 PRO204 THR205 ARG206 ASN207 GLU208 ASN209 THR210 ARG211 TYR212 PHE213 GLY214 THR215 LEU216 THR217 GLY218 GLY219 GLU220 ASN221 VAL222 MET223 PRO224 VAL225 LEU226 HIS227 ILE228 THR229 ASN230 THR231 ALA232 THR233 THR234 VAL235 LEU236 LEU237 ASP238 GLU239 PHE240 GLY241 VAL242 GLY243 PRO244 LEU245 CYS246 LYS247 GLY248 ASP249 ASN250 LEU251 TYR252 LEU253 SER254 ALA255 VAL256 ASP257 VAL258 CYS259 GLY260 MET261 PHE262 THR263 ASN264 ARG265 SER266 GLY267 SER268 GLN269 GLN270 TRP271 ARG272 GLY273 LEU274 SER275 ARG276 TYR277 PHE278 LYS279 VAL280 GLN281 LEU282 ARG283 LYS284 ARG285 ARG286 VAL287 LYS288 ASN289
Unit 2 VAL24 GLU25 VAL26 LEU27 GLU28 VAL29 LYS30 THR31 GLY32 VAL33 ASP34 SER35 ILE36 THR37 GLU38 VAL39 GLU40 CYS41 PHE42 LEU43 THR44 PRO45 GLU46 MET47 GLY48 ASP49 PRO50 ASP51 GLU52 HIS53 LEU54 ARG55 GLY56 PHE57 SER58 LYS59 SER60 ILE61 SER62 ILE63 SER64 ASP65 THR66 PHE67 GLU68 SER69 ASP70 SER71 PRO72 ASN73 ARG74 ASP75 MET76 LEU77 PRO78 CYS79 TYR80 SER81 VAL82 ALA83 ARG84 ILE85 PRO86 LEU87 PRO88 ASN89 LEU90 ASN91 ILE99 LEU100 MET101 TRP102 GLU103 ALA104 VAL105 THR106 LEU107 LYS108 THR109 GLU110 VAL111 ILE112 GLY113 VAL114 THR115 SER116 LEU117 MET118 ASN119 VAL120 HIS121 SER122 ASN123 GLY124 GLN125 ALA126 THR127 HIS128 ASP129 ASN130 GLY131 ALA132 GLY133 LYS134 PRO135 VAL136 GLN137 GLY138 THR139 SER140 PHE141 HIS142 PHE143 PHE144 SER145 VAL146 GLY147 GLY148 GLU149 ALA150 LEU151 GLU152 LEU153 GLN154 GLY155 VAL156 LEU157 PHE158 ASN159 TYR160 ARG161 THR162 LYS163 TYR164 PRO165 ASP166 GLY167 THR168 ILE169 PHE170 PRO171 LYS172 ASN173 ALA174 THR175 VAL176 GLN177 SER178 GLN179 VAL180 MET181 ASN182 THR183 GLU184 HIS185 LYS186 ALA187 TYR188 LEU189 ASP190 LYS191 ASN192 LYS193 ALA194 TYR195 PRO196 VAL197 GLU198 CYS199 TRP200 VAL201 PRO202 ASP203 PRO204 THR205 ARG206 ASN207 GLU208 ASN209 THR210 ARG211 TYR212 PHE213 GLY214 THR215 LEU216 THR217 GLY218 GLY219 GLU220 ASN221 VAL222 MET223 PRO224 VAL225 LEU226 HIS227 ILE228 THR229 ASN230 THR231 ALA232 THR233 THR234 VAL235 LEU236 LEU237 ASP238 GLU239 PHE240 GLY241 VAL242 GLY243 PRO244 LEU245 CYS246 LYS247 GLY248 ASP249 ASN250 LEU251 TYR252 LEU253 SER254 ALA255 VAL256 ASP257 VAL258 CYS259 GLY260 MET261 PHE262 THR263 ASN264 ARG265 SER266 GLY267 SER268 GLN269 GLN270 TRP271 ARG272 GLY273 LEU274 SER275 ARG276 TYR277 PHE278 LYS279 VAL280 GLN281 LEU282 ARG283 LYS284 ARG285 ARG286 VAL287 LYS288
Unit 3 GLU25 VAL26 LEU27 GLU28 VAL29 LYS30 THR31 GLY32 VAL33 ASP34 SER35 ILE36 THR37 GLU38 VAL39 GLU40 CYS41 PHE42 LEU43 THR44 PRO45 GLU46 MET47 GLY48 ASP49 PRO50 ASP51 GLU52 HIS53 LEU54 ARG55 GLY56 PHE57 SER58 LYS59 SER60 ILE61 SER62 ILE63 SER64 ASP65 THR66 PHE67 GLU68 SER69 ASP70 SER71 PRO72 ASN73 ARG74 ASP75 MET76 LEU77 PRO78 CYS79 TYR80 SER81 VAL82 ALA83 ARG84 ILE85 PRO86 LEU87 PRO88 ASN89 LEU90 ILE99 LEU100 MET101 TRP102 GLU103 ALA104 VAL105 THR106 LEU107 LYS108 THR109 GLU110 VAL111 ILE112 GLY113 VAL114 THR115 SER116 LEU117 MET118 ASN119 VAL120 HIS121 SER122 ASN123 GLY124 GLN125 ALA126 THR127 HIS128 ASP129 ASN130 GLY131 ALA132 GLY133 LYS134 PRO135 VAL136 GLN137 GLY138 THR139 SER140 PHE141 HIS142 PHE143 PHE144 SER145 VAL146 GLY147 GLY148 GLU149 ALA150 LEU151 GLU152 LEU153 GLN154 GLY155 VAL156 LEU157 PHE158 ASN159 TYR160 ARG161 THR162 LYS163 TYR164 PRO165 ASP166 GLY167 THR168 ILE169 PHE170 PRO171 LYS172 ASN173 ALA174 THR175 VAL176 GLN177 SER178 GLN179 VAL180 MET181 ASN182 THR183 GLU184 HIS185 LYS186 ALA187 TYR188 LEU189 ASP190 LYS191 ASN192 LYS193 ALA194 TYR195 PRO196 VAL197 GLU198 CYS199 TRP200 VAL201 PRO202 ASP203 PRO204 THR205 ARG206 ASN207 GLU208 ASN209 THR210 ARG211 TYR212 PHE213 GLY214 THR215 LEU216 THR217 GLY218 GLY219 GLU220 ASN221 VAL222 MET223 PRO224 VAL225 LEU226 HIS227 ILE228 THR229 ASN230 THR231 ALA232 THR233 THR234 VAL235 LEU236 LEU237 ASP238 GLU239 PHE240 GLY241 VAL242 GLY243 PRO244 LEU245 CYS246 LYS247 GLY248 ASP249 ASN250 LEU251 TYR252 LEU253 SER254 ALA255 VAL256 ASP257 VAL258 CYS259 GLY260 MET261 PHE262 THR263 ASN264 ARG265 SER266 GLY267 SER268 GLN269 GLN270 TRP271 ARG272 GLY273 LEU274 SER275 ARG276 TYR277 PHE278 LYS279 VAL280 GLN281 LEU282 ARG283 LYS284 ARG285 ARG286 VAL287 LYS288
Unit 4 VAL24 GLU25 VAL26 LEU27 GLU28 VAL29 LYS30 THR31 GLY32 VAL33 ASP34 SER35 ILE36 THR37 GLU38 VAL39 GLU40 CYS41 PHE42 LEU43 THR44 PRO45 GLU46 MET47 GLY48 ASP49 PRO50 ASP51 GLU52 HIS53 LEU54 ARG55 GLY56 PHE57 SER58 LYS59 SER60 ILE61 SER62 ILE63 SER64 ASP65 THR66 PHE67 GLU68 SER69 ASP70 SER71 PRO72 ASN73 ARG74 ASP75 MET76 LEU77 PRO78 CYS79 TYR80 SER81 VAL82 ALA83 ARG84 ILE85 PRO86 LEU87 PRO88 ASN89 LEU90 ILE99 LEU100 MET101 TRP102 GLU103 ALA104 VAL105 THR106 LEU107 LYS108 THR109 GLU110 VAL111 ILE112 GLY113 VAL114 THR115 SER116 LEU117 MET118 ASN119 VAL120 HIS121 SER122 ASN123 GLY124 GLN125 ALA126 THR127 HIS128 ASP129 ASN130 GLY131 ALA132 GLY133 LYS134 PRO135 VAL136 GLN137 GLY138 THR139 SER140 PHE141 HIS142 PHE143 PHE144 SER145 VAL146 GLY147 GLY148 GLU149 ALA150 LEU151 GLU152 LEU153 GLN154 GLY155 VAL156 LEU157 PHE158 ASN159 TYR160 ARG161 THR162 LYS163 TYR164 PRO165 ASP166 GLY167 THR168 ILE169 PHE170 PRO171 LYS172 ASN173 ALA174 THR175 VAL176 GLN177 SER178 GLN179 VAL180 MET181 ASN182 THR183 GLU184 HIS185 LYS186 ALA187 TYR188 LEU189 ASP190 LYS191 ASN192 LYS193 ALA194 TYR195 PRO196 VAL197 GLU198 CYS199 TRP200 VAL201 PRO202 ASP203 PRO204 THR205 ARG206 ASN207 GLU208 ASN209 THR210 ARG211 TYR212 PHE213 GLY214 THR215 LEU216 THR217 GLY218 GLY219 GLU220 ASN221 VAL222 MET223 PRO224 VAL225 LEU226 HIS227 ILE228 THR229 ASN230 THR231 ALA232 THR233 THR234 VAL235 LEU236 LEU237 ASP238 GLU239 PHE240 GLY241 VAL242 GLY243 PRO244 LEU245 CYS246 LYS247 GLY248 ASP249 ASN250 LEU251 TYR252 LEU253 SER254 ALA255 VAL256 ASP257 VAL258 CYS259 GLY260 MET261 PHE262 THR263 ASN264 ARG265 SER266 GLY267 SER268 GLN269 GLN270 TRP271 ARG272 GLY273 LEU274 SER275 ARG276 TYR277 PHE278 LYS279 VAL280 GLN281 LEU282 ARG283 LYS284 ARG285 ARG286 VAL287 LYS288
Unit 5 VAL24 GLU25 VAL26 LEU27 GLU28 VAL29 LYS30 THR31 GLY32 VAL33 ASP34 SER35 ILE36 THR37 GLU38 VAL39 GLU40 CYS41 PHE42 LEU43 THR44 PRO45 GLU46 MET47 GLY48 ASP49 PRO50 ASP51 GLU52 HIS53 LEU54 ARG55 GLY56 PHE57 SER58 LYS59 SER60 ILE61 SER62 ILE63 SER64 ASP65 THR66 PHE67 GLU68 SER69 ASP70 SER71 PRO72 ASN73 ARG74 ASP75 MET76 LEU77 PRO78 CYS79 TYR80 SER81 VAL82 ALA83 ARG84 ILE85 PRO86 LEU87 PRO88 ASN89 LEU90 ASN91 ILE99 LEU100 MET101 TRP102 GLU103 ALA104 VAL105 THR106 LEU107 LYS108 THR109 GLU110 VAL111 ILE112 GLY113 VAL114 THR115 SER116 LEU117 MET118 ASN119 VAL120 HIS121 SER122 ASN123 GLY124 GLN125 ALA126 THR127 HIS128 ASP129 ASN130 GLY131 ALA132 GLY133 LYS134 PRO135 VAL136 GLN137 GLY138 THR139 SER140 PHE141 HIS142 PHE143 PHE144 SER145 VAL146 GLY147 GLY148 GLU149 ALA150 LEU151 GLU152 LEU153 GLN154 GLY155 VAL156 LEU157 PHE158 ASN159 TYR160 ARG161 THR162 LYS163 TYR164 PRO165 ASP166 GLY167 THR168 ILE169 PHE170 PRO171 LYS172 ASN173 ALA174 THR175 VAL176 GLN177 SER178 GLN179 VAL180 MET181 ASN182 THR183 GLU184 HIS185 LYS186 ALA187 TYR188 LEU189 ASP190 LYS191 ASN192 LYS193 ALA194 TYR195 PRO196 VAL197 GLU198 CYS199 TRP200 VAL201 PRO202 ASP203 PRO204 THR205 ARG206 ASN207 GLU208 ASN209 THR210 ARG211 TYR212 PHE213 GLY214 THR215 LEU216 THR217 GLY218 GLY219 GLU220 ASN221 VAL222 MET223 PRO224 VAL225 LEU226 HIS227 ILE228 THR229 ASN230 THR231 ALA232 THR233 THR234 VAL235 LEU236 LEU237 ASP238 GLU239 PHE240 GLY241 VAL242 GLY243 PRO244 LEU245 CYS246 LYS247 GLY248 ASP249 ASN250 LEU251 TYR252 LEU253 SER254 ALA255 VAL256 ASP257 VAL258 CYS259 GLY260 MET261 PHE262 THR263 ASN264 ARG265 SER266 GLY267 SER268 GLN269 GLN270 TRP271 ARG272 GLY273 LEU274 SER275 ARG276 TYR277 PHE278 LYS279 VAL280 GLN281 LEU282 ARG283 LYS284 ARG285 ARG286 VAL287 LYS288
Ligands
Unit 6 GOL301
Unit 7 GOL301
Unit 8 GOL301 EDO302
Unit 9 GOL301 EDO302
Unit 10 GOL301
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany