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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF YEAST SAGA DUBM WITH SGF73 N59D MUTANT AT 2.36 RESOLUTION
Keywords MULTI-PROTEIN COMPLEX, HYDROLASE-TRANSCRIPTION COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4WA6     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 8  A 440 3523 0
2  Protein   TRANSCRIPTION AND MRNA EXPORT FACTOR SUS1  B 96 775 0
3  Protein   SAGA-ASSOCIATED FACTOR 11  C 82 652 0
4  Protein   SAGA-ASSOCIATED FACTOR 73  E 85 682 0
5  Protein   UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 8  D 415 3333 0
6  Protein   TRANSCRIPTION AND MRNA EXPORT FACTOR SUS1  F 93 750 0
7  Protein   SAGA-ASSOCIATED FACTOR 11  G 71 564 0
8  Protein   SAGA-ASSOCIATED FACTOR 73  H 82 656 0
9  Ligand   UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 8  A 6 0 6
10  Ligand   SAGA-ASSOCIATED FACTOR 11  C 1 0 1
11  Ligand   SAGA-ASSOCIATED FACTOR 73  E 1 0 1
12  Ligand   UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 8  D 5 0 5
13  Ligand   SAGA-ASSOCIATED FACTOR 11  G 1 0 1
14  Ligand   SAGA-ASSOCIATED FACTOR 73  H 1 0 1
15 Water     139 0 139
total       1518 10935 154
Proteins
Unit 1 MET1 SER2 ILE3 CYS4 PRO5 HIS6 ILE7 GLN8 GLN9 VAL10 PHE11 GLN12 ASN13 GLU14 LYS15 SER16 LYS17 ASP18 GLY19 VAL20 LEU21 LYS22 THR23 CYS24 ASN25 ALA26 ALA27 ARG28 TYR29 ILE30 LEU31 ASN32 HIS33 SER34 VAL35 PRO36 LYS37 GLU38 LYS39 PHE40 LEU41 ASN42 THR43 MET44 LYS45 CYS46 GLY47 THR48 CYS49 HIS50 GLU51 ILE52 ASN53 SER54 GLY55 ALA56 THR57 PHE58 MET59 CYS60 LEU61 GLN62 CYS63 GLY64 PHE65 CYS66 GLY67 CYS68 TRP69 ASN70 HIS71 SER72 HIS73 PHE74 LEU75 SER76 HIS77 SER78 LYS79 GLN80 ILE81 GLY82 HIS83 ILE84 PHE85 GLY86 ILE87 ASN88 SER89 ASN90 ASN91 GLY92 LEU93 LEU94 PHE95 CYS96 PHE97 LYS98 CYS99 GLU100 ASP101 TYR102 ILE103 GLY104 ASN105 ILE106 ASP107 LEU108 ILE109 ASN110 ASP111 ALA112 ILE113 LEU114 ALA115 LYS116 TYR117 TRP118 ASP119 ASP120 VAL121 CYS122 THR123 LYS124 THR125 MET126 VAL127 PRO128 SER129 MET130 GLU131 ARG132 ARG133 ASP134 GLY135 LEU136 SER137 GLY138 LEU139 ILE140 ASN141 MET142 GLY143 SER144 THR145 CYS146 PHE147 MET148 SER149 SER150 ILE151 LEU152 GLN153 CYS154 LEU155 ILE156 HIS157 ASN158 PRO159 TYR160 PHE161 ILE162 ARG163 HIS164 SER165 MET166 SER167 GLN168 ILE169 HIS170 SER171 ASN172 ASN173 CYS174 LYS175 VAL176 ARG177 SER178 PRO179 ASP180 LYS181 CYS182 PHE183 SER184 CYS185 ALA186 LEU187 ASP188 LYS189 ILE190 VAL191 HIS192 GLU193 LEU194 TYR195 GLY196 ALA197 LEU198 ASN211 ARG212 GLN213 THR214 GLY215 PHE216 ILE217 TYR218 LEU219 LEU220 THR221 CYS222 ALA223 TRP224 LYS225 ILE226 GLN236 ASP237 ALA238 HIS239 GLU240 PHE241 TRP242 GLN243 PHE244 ILE245 ILE246 ASN247 GLN248 ILE249 HIS250 GLN251 SER252 TYR253 VAL254 LEU255 ASP256 LEU257 PRO258 ASN259 ALA260 LYS261 GLU262 VAL263 SER264 ARG265 ALA266 ASN267 ASN268 LYS269 GLN270 CYS271 GLU272 CYS273 ILE274 VAL275 HIS276 THR277 VAL278 PHE279 GLU280 GLY281 SER282 LEU283 GLU284 SER285 SER286 ILE287 VAL288 CYS289 PRO290 GLY291 CYS292 GLN293 ASN294 ASN295 SER296 LYS297 THR298 THR299 ILE300 ASP301 PRO302 PHE303 LEU304 ASP305 LEU306 SER307 LEU308 ASP309 ILE310 LYS311 ASP312 LYS313 LYS314 LYS315 LEU316 TYR317 GLU318 CYS319 LEU320 ASP321 SER322 PHE323 HIS324 LYS325 LYS326 GLU327 GLN328 LEU329 LYS330 ASP331 PHE332 ASN333 TYR334 HIS335 CYS336 GLY337 GLU338 CYS339 ASN340 SER341 THR342 GLN343 ASP344 ALA345 ILE346 LYS347 GLN348 LEU349 GLY350 ILE351 HIS352 LYS353 LEU354 PRO355 SER356 VAL357 LEU358 VAL359 LEU360 GLN361 LEU362 LYS363 ARG364 PHE365 GLU366 HIS367 LEU368 LEU369 ASN370 GLY371 SER372 ASN373 ARG374 LYS375 LEU376 ASP377 ASP378 PHE379 ILE380 GLU381 PHE382 PRO383 THR384 TYR385 LEU386 ASN387 MET388 LYS389 ASN390 TYR391 CYS392 SER393 THR394 LYS405 VAL406 PRO407 ASP408 ILE409 ILE410 TYR411 GLU412 LEU413 ILE414 GLY415 ILE416 VAL417 SER418 HIS419 LYS420 GLY421 THR422 VAL423 ASN424 GLU425 GLY426 HIS427 TYR428 ILE429 ALA430 PHE431 CYS432 LYS433 ILE434 SER435 GLY436 GLY437 GLN438 TRP439 PHE440 LYS441 PHE442 ASN443 ASP444 SER445 MET446 VAL447 SER448 SER449 ILE450 SER451 GLN452 GLU453 GLU454 VAL455 LEU456 LYS457 GLU458 GLN459 ALA460 TYR461 LEU462 LEU463 PHE464 TYR465 THR466 ILE467 ARG468 GLN469 VAL470 ASN471
Unit 2 MET1 THR2 MET3 ASP4 THR5 ALA6 GLN7 LEU8 LYS9 SER10 GLN11 ILE12 GLN13 GLN14 TYR15 LEU16 VAL17 GLU18 SER19 GLY20 ASN21 TYR22 GLU23 LEU24 ILE25 SER26 ASN27 GLU28 LEU29 LYS30 ALA31 ARG32 LEU33 LEU34 GLN35 GLU36 GLY37 TRP38 VAL39 ASP40 LYS41 VAL42 LYS43 ASP44 LEU45 THR46 LYS47 SER48 GLU49 MET50 ASN51 ILE52 ASN53 GLU54 SER55 THR56 ASN57 PHE58 THR59 GLN60 ILE61 LEU62 SER63 THR64 VAL65 GLU66 PRO67 LYS68 ALA69 LEU70 GLU71 MET72 VAL73 SER74 ASP75 SER76 THR77 ARG78 GLU79 THR80 VAL81 LEU82 LYS83 GLN84 ILE85 ARG86 GLU87 PHE88 LEU89 GLU90 GLU91 ILE92 VAL93 ASP94 THR95 GLN96
Unit 3 THR5 ILE6 THR7 ILE8 ASP9 SER10 ILE11 SER12 ASN13 GLY14 ILE15 LEU16 ASN17 ASN18 LEU19 LEU20 THR21 THR22 LEU23 ILE24 GLN25 ASP26 ILE27 VAL28 ALA29 ARG30 GLU31 THR32 THR33 GLN34 GLN35 GLN36 LEU37 LEU38 LYS39 THR40 ARG41 TYR42 PRO43 ASP44 LEU45 ARG46 SER47 TYR48 TYR49 PHE50 ASP51 PRO52 ASN53 GLY54 SER55 LEU56 ASP57 ILE58 ASN59 GLY60 LEU61 GLN62 LYS63 GLN64 GLN65 GLU66 SER67 SER68 GLN69 TYR70 ILE71 VAL80 SER81 ALA82 ASN83 ARG84 LEU85 ALA86 ALA87 HIS88 LEU89 GLN90 ARG91 CYS92 LEU93 SER94
Unit 4 ARG2 SER3 GLY4 ASP5 ALA6 GLU7 ILE8 LYS9 GLY10 ILE11 LYS12 PRO13 LYS14 VAL15 ILE16 GLU17 GLU18 TYR19 SER20 ASP30 SER31 TRP32 LYS33 SER34 LEU35 MET36 SER37 SER38 ALA39 LYS40 ASP41 THR42 PRO43 LEU44 GLN45 TYR46 ASP47 HIS48 MET49 ASN50 ARG51 GLU52 SER53 LEU54 LYS55 LYS56 TYR57 PHE58 ASP59 PRO60 ASN61 ALA62 GLN63 LEU64 ILE65 GLU66 ASP67 PRO68 LEU69 ASP70 LYS71 PRO72 ILE73 GLN74 TYR75 ARG76 VAL77 CYS78 GLU79 LYS80 CYS81 GLY82 LYS83 PRO84 LEU85 ALA86 LEU87 THR88 ALA89 ILE90 VAL91 ASP92 HIS93 LEU94 GLU95
Unit 5 MET1 SER2 ILE3 CYS4 PRO5 HIS6 ILE7 GLN8 GLN9 VAL10 PHE11 GLN12 ASN13 GLU14 LYS15 SER16 LYS17 ASP18 GLY19 VAL20 LEU21 LYS22 THR23 CYS24 ASN25 ALA26 ALA27 ARG28 TYR29 ILE30 LEU31 ASN32 HIS33 SER34 VAL35 PRO36 LYS37 GLU38 LYS39 PHE40 LEU41 ASN42 THR43 MET44 LYS45 CYS46 GLY47 THR48 CYS49 HIS50 GLU51 ILE52 ASN53 SER54 GLY55 ALA56 THR57 PHE58 MET59 CYS60 LEU61 GLN62 CYS63 GLY64 PHE65 CYS66 GLY67 CYS68 TRP69 ASN70 HIS71 SER72 HIS73 PHE74 LEU75 SER76 HIS77 SER78 LYS79 GLN80 ILE81 GLY82 HIS83 ILE84 PHE85 GLY86 ILE87 ASN88 SER89 ASN90 ASN91 GLY92 LEU93 LEU94 PHE95 CYS96 PHE97 LYS98 CYS99 GLU100 ASP101 TYR102 ILE103 GLY104 ASN105 ILE106 ASP107 LEU108 ILE109 ASN110 ASP111 ALA112 ILE113 LEU114 ALA115 LYS116 TYR117 TRP118 ASP119 ASP120 VAL121 CYS122 THR123 LYS124 THR125 MET126 VAL127 PRO128 SER129 MET130 GLU131 ARG132 ARG133 ASP134 GLY135 LEU136 SER137 GLY138 LEU139 ILE140 ASN141 MET142 GLY143 SER144 THR145 CYS146 PHE147 MET148 SER149 SER150 ILE151 LEU152 GLN153 CYS154 LEU155 ILE156 HIS157 ASN158 PRO159 TYR160 PHE161 ILE162 ARG163 HIS164 SER165 MET166 SER167 GLN168 ILE169 HIS170 SER171 ASN172 ASN173 CYS174 LYS175 VAL176 ARG177 SER178 PRO179 ASP180 LYS181 CYS182 PHE183 SER184 CYS185 ALA186 LEU187 ASP188 LYS189 ILE190 VAL191 HIS192 GLU193 LEU194 TYR195 GLY196 ALA197 LEU198 ASN199 THR210 ASN211 ARG212 GLN213 THR214 GLY215 PHE216 ILE217 TYR218 LEU219 LEU220 THR221 CYS222 ALA223 TRP224 LYS225 ILE226 GLN236 ASP237 ALA238 HIS239 GLU240 PHE241 TRP242 GLN243 PHE244 ILE245 ILE246 ASN247 GLN248 ILE249 HIS250 GLN251 SER252 TYR253 VAL254 LEU255 ASP256 LEU257 PRO258 ASN259 ALA260 LYS261 GLU262 VAL263 SER264 ARG265 ALA266 ASN267 ASN268 LYS269 GLN270 CYS271 GLU272 CYS273 ILE274 VAL275 HIS276 THR277 VAL278 PHE279 GLU280 GLY281 SER282 LEU283 GLU284 SER285 SER286 ILE287 SER296 LYS297 THR298 THR299 ILE300 ASP301 PRO302 PHE303 LEU304 ASP305 LEU306 SER307 LEU308 ASP309 ILE310 LYS311 ASP312 LYS313 LYS314 LYS315 LEU316 TYR317 GLU318 CYS319 LEU320 ASP321 SER322 PHE323 HIS324 LYS325 LYS326 GLU327 ILE346 LYS347 GLN348 LEU349 GLY350 ILE351 HIS352 LYS353 LEU354 PRO355 SER356 VAL357 LEU358 VAL359 LEU360 GLN361 LEU362 LYS363 ARG364 PHE365 GLU366 HIS367 LEU368 LEU369 ASN370 GLY371 SER372 ASN373 ARG374 LYS375 LEU376 ASP377 ASP378 PHE379 ILE380 GLU381 PHE382 PRO383 THR384 TYR385 LEU386 ASN387 MET388 LYS389 ASN390 TYR391 CYS392 SER393 LYS405 VAL406 PRO407 ASP408 ILE409 ILE410 TYR411 GLU412 LEU413 ILE414 GLY415 ILE416 VAL417 SER418 HIS419 LYS420 GLY421 THR422 VAL423 ASN424 GLU425 GLY426 HIS427 TYR428 ILE429 ALA430 PHE431 CYS432 LYS433 ILE434 SER435 GLY436 GLY437 GLN438 TRP439 PHE440 LYS441 PHE442 ASN443 ASP444 SER445 MET446 VAL447 SER448 SER449 ILE450 SER451 GLN452 GLU453 GLU454 VAL455 LEU456 LYS457 GLU458 GLN459 ALA460 TYR461 LEU462 LEU463 PHE464 TYR465 THR466 ILE467 ARG468 GLN469 VAL470 ASN471
Unit 6 MET3 ASP4 THR5 ALA6 GLN7 LEU8 LYS9 SER10 GLN11 ILE12 GLN13 GLN14 TYR15 LEU16 VAL17 GLU18 SER19 GLY20 ASN21 TYR22 GLU23 LEU24 ILE25 SER26 ASN27 GLU28 LEU29 LYS30 ALA31 ARG32 LEU33 LEU34 GLN35 GLU36 GLY37 TRP38 VAL39 ASP40 LYS41 VAL42 LYS43 ASP44 LEU45 THR46 LYS47 SER48 GLU49 MET50 ASN51 ILE52 ASN53 GLU54 SER55 THR56 ASN57 PHE58 THR59 GLN60 ILE61 LEU62 SER63 THR64 VAL65 GLU66 PRO67 LYS68 ALA69 LEU70 GLU71 MET72 VAL73 SER74 ASP75 SER76 THR77 ARG78 GLU79 THR80 VAL81 LEU82 LYS83 GLN84 ILE85 ARG86 GLU87 PHE88 LEU89 GLU90 GLU91 ILE92 VAL93 ASP94 THR95
Unit 7 MET1 THR2 GLU3 GLU4 THR5 ILE6 THR7 ILE8 ASP9 SER10 ILE11 SER12 ASN13 GLY14 ILE15 LEU16 ASN17 ASN18 LEU19 LEU20 THR21 THR22 LEU23 ILE24 GLN25 ASP26 ILE27 VAL28 ALA29 ARG30 GLU31 THR32 THR33 GLN34 GLN35 GLN36 LEU37 LEU38 LYS39 THR40 ARG41 TYR42 PRO43 ASP44 LEU45 ARG46 SER47 TYR70 ILE71 HIS72 CYS73 GLU74 ASN75 CYS76 GLY77 ARG78 ASP79 VAL80 SER81 ASN83 ARG84 LEU85 ALA86 ALA87 HIS88 LEU89 GLN90 ARG91 CYS92 LEU93 SER94
Unit 8 GLY4 ASP5 ALA6 GLU7 ILE8 LYS9 GLY10 ILE11 LYS12 PRO13 LYS14 VAL15 ILE16 GLU17 GLU18 ASP30 SER31 TRP32 LYS33 SER34 LEU35 MET36 SER37 SER38 ALA39 LYS40 ASP41 THR42 PRO43 LEU44 GLN45 TYR46 ASP47 HIS48 MET49 ASN50 ARG51 GLU52 SER53 LEU54 LYS55 LYS56 TYR57 PHE58 ASP59 PRO60 ASN61 ALA62 GLN63 LEU64 ILE65 GLU66 ASP67 PRO68 LEU69 ASP70 LYS71 PRO72 ILE73 GLN74 TYR75 ARG76 VAL77 CYS78 GLU79 LYS80 CYS81 GLY82 LYS83 PRO84 LEU85 ALA86 LEU87 THR88 ALA89 ILE90 VAL91 ASP92 HIS93 LEU94 GLU95 ASN96
Ligands
Unit 9 ZN501 ZN502 ZN503 ZN504 ZN505 ZN506
Unit 10 ZN101
Unit 11 ZN101
Unit 12 ZN501 ZN502 ZN503 ZN504 ZN505
Unit 13 ZN101
Unit 14 ZN101
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany