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Sequence, Chains, Asymmetric and Biological Units

Title AMPPNP BOUND RAD50 IN COMPLEX WITH DSDNA
Keywords ATPASE, DNA AMPPNP BOUND, HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4W9M     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Other macromolecule   DNA (5'-D(*GP*GP*TP*CP*GP*GP*TP*GP*AP*CP*CP*GP*AP 3')  Y 15 306 0
2  Other macromolecule   DNA (5'-D(*GP*GP*TP*CP*GP*GP*TP*CP*AP*CP*CP*GP*AP 3')  A 15 303 0
3  Protein   PROBABLE DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATP PROBABLE DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATPASE  C 352 2824 0
4  Protein   EXONUCLEASE, PUTATIVE  D 36 319 0
5  Protein   PROBABLE DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATP PROBABLE DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATPASE  E 351 2815 0
6  Protein   EXONUCLEASE, PUTATIVE  F 36 321 0
7  Other macromolecule   DNA (5'-D(*GP*GP*TP*CP*GP*GP*TP*GP*AP*CP*CP*GP*AP 3')  Z 15 306 0
8  Other macromolecule   DNA (5'-D(*GP*GP*TP*CP*GP*GP*TP*CP*AP*CP*CP*GP*AP 3')  G 15 303 0
9  Protein   PROBABLE DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATP PROBABLE DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATPASE  I 352 2824 0
10  Protein   EXONUCLEASE, PUTATIVE  J 36 319 0
11  Protein   PROBABLE DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATP PROBABLE DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATPASE  K 352 2821 0
12  Protein   EXONUCLEASE, PUTATIVE  L 35 313 0
13  Ligand   PROBABLE DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATP PROBABLE DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATPASE  C 2 0 32
14  Ligand   PROBABLE DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATP PROBABLE DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATPASE  E 2 0 32
15  Ligand   PROBABLE DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATP PROBABLE DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATPASE  I 2 0 32
16  Ligand   PROBABLE DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATP PROBABLE DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATPASE  K 2 0 32
17 Water     267 0 267
total       1885 13774 395
Proteins
Unit 3 MET1 ARG2 PRO3 GLU4 ARG5 LEU6 THR7 VAL8 ARG9 ASN10 PHE11 LEU12 GLY13 LEU14 LYS15 ASN16 VAL17 ASP18 ILE19 GLU20 PHE21 GLN22 SER23 GLY24 ILE25 THR26 VAL27 VAL28 GLU29 GLY30 PRO31 ASN32 GLY33 ALA34 GLY35 LYS36 SER37 SER38 LEU39 PHE40 GLU41 ALA42 ILE43 SER44 PHE45 ALA46 LEU47 PHE48 GLY49 ASN50 GLY51 ILE52 ARG53 TYR54 PRO55 ASN56 SER57 TYR58 ASP59 TYR60 VAL61 ASN62 ARG63 ASN64 ALA65 VAL66 ASP67 GLY68 THR69 ALA70 ARG71 LEU72 VAL73 PHE74 GLN75 PHE76 GLU77 ARG78 GLY79 GLY80 LYS81 ARG82 TYR83 GLU84 ILE85 ILE86 ARG87 GLU88 ILE89 ASN90 ALA91 LEU92 GLN93 ARG94 LYS95 HIS96 ASN97 ALA98 LYS99 LEU100 SER101 GLU102 ILE103 LEU104 GLU105 ASN106 GLY107 LYS108 LYS109 ALA110 ALA111 ILE112 ALA113 ALA114 LYS115 PRO116 THR117 SER118 VAL119 LYS120 GLN121 GLU122 VAL123 GLU124 LYS125 ILE126 LEU127 GLY128 ILE129 GLU130 HIS131 ARG132 THR133 PHE134 ILE135 ARG136 THR137 VAL138 PHE139 LEU140 PRO141 GLN142 GLY143 GLU144 ILE145 ASP146 LYS147 LEU148 LEU149 ILE150 SER151 PRO152 PRO153 SER154 GLU155 ILE156 THR157 GLU158 ILE159 ILE160 SER161 ASP162 VAL163 PHE164 GLN165 SER166 LYS167 GLU168 THR169 LEU170 GLU171 LYS172 LEU173 GLU174 LYS175 LEU176 LEU177 LYS178 GLU179 LYS180 MET181 LYS182 LYS183 LEU184 GLU185 ASN186 GLU187 ILE188 GLU688 LYS689 LYS690 LEU691 LYS692 GLU693 MET694 SER695 ASP696 GLU697 TYR698 ASN699 ASN700 LEU701 ASP702 LEU703 LEU704 ARG705 LYS706 TYR707 LEU708 PHE709 ASP710 LYS711 SER712 ASN713 PHE714 SER715 ARG716 TYR717 PHE718 THR719 GLY720 ARG721 VAL722 LEU723 GLU724 ALA725 VAL726 LEU727 LYS728 ARG729 THR730 LYS731 ALA732 TYR733 LEU734 ASP735 ILE736 LEU737 THR738 ASN739 GLY740 ARG741 PHE742 ASP743 ILE744 ASP745 PHE746 ASP747 ASP748 GLU749 LYS750 GLY751 GLY752 PHE753 ILE754 ILE755 LYS756 ASP757 TRP758 GLY759 ILE760 GLU761 ARG762 PRO763 ALA764 ARG765 GLY766 LEU767 SER768 GLY769 GLY770 GLU771 ARG772 ALA773 LEU774 ILE775 SER776 ILE777 SER778 LEU779 ALA780 MET781 SER782 LEU783 ALA784 GLU785 VAL786 ALA787 SER788 GLY789 ARG790 LEU791 ASP792 ALA793 PHE794 PHE795 ILE796 ASP797 GLU798 GLY799 PHE800 SER801 SER802 LEU803 ASP804 THR805 GLU806 ASN807 LYS808 GLU809 LYS810 ILE811 ALA812 SER813 VAL814 LEU815 LYS816 GLU817 LEU818 GLU819 ARG820 LEU821 ASN822 LYS823 VAL824 ILE825 VAL826 PHE827 ILE828 THR829 HIS830 ASP831 ARG832 GLU833 PHE834 SER835 GLU836 ALA837 PHE838 ASP839 ARG840 LYS841 LEU842 ARG843 ILE844 THR845 GLY846 GLY847 VAL848 VAL849 VAL850 ASN851
Unit 4 LYS348 LEU349 ASP350 TYR351 PHE352 GLU353 LEU354 PHE355 LYS356 GLU357 TYR358 LEU359 LYS360 LYS361 ARG362 GLU363 GLU364 ASN365 HIS366 GLU367 LYS368 LEU369 LEU370 LYS371 ILE372 LEU373 ASP374 GLU375 LEU376 LEU377 ASP378 GLU379 VAL380 LYS381 LYS382 SER383
Unit 5 MET1 ARG2 PRO3 GLU4 ARG5 LEU6 THR7 VAL8 ARG9 ASN10 PHE11 LEU12 GLY13 LEU14 LYS15 ASN16 VAL17 ASP18 ILE19 GLU20 PHE21 GLN22 SER23 GLY24 ILE25 THR26 VAL27 VAL28 GLU29 GLY30 PRO31 ASN32 GLY33 ALA34 GLY35 LYS36 SER37 SER38 LEU39 PHE40 GLU41 ALA42 ILE43 SER44 PHE45 ALA46 LEU47 PHE48 GLY49 ASN50 GLY51 ILE52 ARG53 TYR54 PRO55 ASN56 SER57 TYR58 ASP59 TYR60 VAL61 ASN62 ARG63 ASN64 ALA65 VAL66 ASP67 GLY68 THR69 ALA70 ARG71 LEU72 VAL73 PHE74 GLN75 PHE76 GLU77 ARG78 GLY79 GLY80 LYS81 ARG82 TYR83 GLU84 ILE85 ILE86 ARG87 GLU88 ILE89 ASN90 ALA91 LEU92 GLN93 ARG94 LYS95 HIS96 ASN97 ALA98 LYS99 LEU100 SER101 GLU102 ILE103 LEU104 GLU105 ASN106 GLY107 LYS108 LYS109 ALA110 ALA111 ILE112 ALA113 ALA114 LYS115 PRO116 THR117 SER118 VAL119 LYS120 GLN121 GLU122 VAL123 GLU124 LYS125 ILE126 LEU127 GLY128 ILE129 GLU130 HIS131 ARG132 THR133 PHE134 ILE135 ARG136 THR137 VAL138 PHE139 LEU140 PRO141 GLN142 GLY143 GLU144 ILE145 ASP146 LYS147 LEU148 LEU149 ILE150 SER151 PRO152 PRO153 SER154 GLU155 ILE156 THR157 GLU158 ILE159 ILE160 SER161 ASP162 VAL163 PHE164 GLN165 SER166 LYS167 GLU168 THR169 LEU170 GLU171 LYS172 LEU173 GLU174 LYS175 LEU176 LEU177 LYS178 GLU179 LYS180 MET181 LYS182 LYS183 LEU184 GLU185 ASN186 GLU187 ILE188 LYS689 LYS690 LEU691 LYS692 GLU693 MET694 SER695 ASP696 GLU697 TYR698 ASN699 ASN700 LEU701 ASP702 LEU703 LEU704 ARG705 LYS706 TYR707 LEU708 PHE709 ASP710 LYS711 SER712 ASN713 PHE714 SER715 ARG716 TYR717 PHE718 THR719 GLY720 ARG721 VAL722 LEU723 GLU724 ALA725 VAL726 LEU727 LYS728 ARG729 THR730 LYS731 ALA732 TYR733 LEU734 ASP735 ILE736 LEU737 THR738 ASN739 GLY740 ARG741 PHE742 ASP743 ILE744 ASP745 PHE746 ASP747 ASP748 GLU749 LYS750 GLY751 GLY752 PHE753 ILE754 ILE755 LYS756 ASP757 TRP758 GLY759 ILE760 GLU761 ARG762 PRO763 ALA764 ARG765 GLY766 LEU767 SER768 GLY769 GLY770 GLU771 ARG772 ALA773 LEU774 ILE775 SER776 ILE777 SER778 LEU779 ALA780 MET781 SER782 LEU783 ALA784 GLU785 VAL786 ALA787 SER788 GLY789 ARG790 LEU791 ASP792 ALA793 PHE794 PHE795 ILE796 ASP797 GLU798 GLY799 PHE800 SER801 SER802 LEU803 ASP804 THR805 GLU806 ASN807 LYS808 GLU809 LYS810 ILE811 ALA812 SER813 VAL814 LEU815 LYS816 GLU817 LEU818 GLU819 ARG820 LEU821 ASN822 LYS823 VAL824 ILE825 VAL826 PHE827 ILE828 THR829 HIS830 ASP831 ARG832 GLU833 PHE834 SER835 GLU836 ALA837 PHE838 ASP839 ARG840 LYS841 LEU842 ARG843 ILE844 THR845 GLY846 GLY847 VAL848 VAL849 VAL850 ASN851
Unit 6 ASP347 LYS348 LEU349 ASP350 TYR351 PHE352 GLU353 LEU354 PHE355 LYS356 GLU357 TYR358 LEU359 LYS360 LYS361 ARG362 GLU363 GLU364 ASN365 HIS366 GLU367 LYS368 LEU369 LEU370 LYS371 ILE372 LEU373 ASP374 GLU375 LEU376 LEU377 ASP378 GLU379 VAL380 LYS381 LYS382
Unit 9 MET1 ARG2 PRO3 GLU4 ARG5 LEU6 THR7 VAL8 ARG9 ASN10 PHE11 LEU12 GLY13 LEU14 LYS15 ASN16 VAL17 ASP18 ILE19 GLU20 PHE21 GLN22 SER23 GLY24 ILE25 THR26 VAL27 VAL28 GLU29 GLY30 PRO31 ASN32 GLY33 ALA34 GLY35 LYS36 SER37 SER38 LEU39 PHE40 GLU41 ALA42 ILE43 SER44 PHE45 ALA46 LEU47 PHE48 GLY49 ASN50 GLY51 ILE52 ARG53 TYR54 PRO55 ASN56 SER57 TYR58 ASP59 TYR60 VAL61 ASN62 ARG63 ASN64 ALA65 VAL66 ASP67 GLY68 THR69 ALA70 ARG71 LEU72 VAL73 PHE74 GLN75 PHE76 GLU77 ARG78 GLY79 GLY80 LYS81 ARG82 TYR83 GLU84 ILE85 ILE86 ARG87 GLU88 ILE89 ASN90 ALA91 LEU92 GLN93 ARG94 LYS95 HIS96 ASN97 ALA98 LYS99 LEU100 SER101 GLU102 ILE103 LEU104 GLU105 ASN106 GLY107 LYS108 LYS109 ALA110 ALA111 ILE112 ALA113 ALA114 LYS115 PRO116 THR117 SER118 VAL119 LYS120 GLN121 GLU122 VAL123 GLU124 LYS125 ILE126 LEU127 GLY128 ILE129 GLU130 HIS131 ARG132 THR133 PHE134 ILE135 ARG136 THR137 VAL138 PHE139 LEU140 PRO141 GLN142 GLY143 GLU144 ILE145 ASP146 LYS147 LEU148 LEU149 ILE150 SER151 PRO152 PRO153 SER154 GLU155 ILE156 THR157 GLU158 ILE159 ILE160 SER161 ASP162 VAL163 PHE164 GLN165 SER166 LYS167 GLU168 THR169 LEU170 GLU171 LYS172 LEU173 GLU174 LYS175 LEU176 LEU177 LYS178 GLU179 LYS180 MET181 LYS182 LYS183 LEU184 GLU185 ASN186 GLU187 ILE188 GLU688 LYS689 LYS690 LEU691 LYS692 GLU693 MET694 SER695 ASP696 GLU697 TYR698 ASN699 ASN700 LEU701 ASP702 LEU703 LEU704 ARG705 LYS706 TYR707 LEU708 PHE709 ASP710 LYS711 SER712 ASN713 PHE714 SER715 ARG716 TYR717 PHE718 THR719 GLY720 ARG721 VAL722 LEU723 GLU724 ALA725 VAL726 LEU727 LYS728 ARG729 THR730 LYS731 ALA732 TYR733 LEU734 ASP735 ILE736 LEU737 THR738 ASN739 GLY740 ARG741 PHE742 ASP743 ILE744 ASP745 PHE746 ASP747 ASP748 GLU749 LYS750 GLY751 GLY752 PHE753 ILE754 ILE755 LYS756 ASP757 TRP758 GLY759 ILE760 GLU761 ARG762 PRO763 ALA764 ARG765 GLY766 LEU767 SER768 GLY769 GLY770 GLU771 ARG772 ALA773 LEU774 ILE775 SER776 ILE777 SER778 LEU779 ALA780 MET781 SER782 LEU783 ALA784 GLU785 VAL786 ALA787 SER788 GLY789 ARG790 LEU791 ASP792 ALA793 PHE794 PHE795 ILE796 ASP797 GLU798 GLY799 PHE800 SER801 SER802 LEU803 ASP804 THR805 GLU806 ASN807 LYS808 GLU809 LYS810 ILE811 ALA812 SER813 VAL814 LEU815 LYS816 GLU817 LEU818 GLU819 ARG820 LEU821 ASN822 LYS823 VAL824 ILE825 VAL826 PHE827 ILE828 THR829 HIS830 ASP831 ARG832 GLU833 PHE834 SER835 GLU836 ALA837 PHE838 ASP839 ARG840 LYS841 LEU842 ARG843 ILE844 THR845 GLY846 GLY847 VAL848 VAL849 VAL850 ASN851
Unit 10 LYS348 LEU349 ASP350 TYR351 PHE352 GLU353 LEU354 PHE355 LYS356 GLU357 TYR358 LEU359 LYS360 LYS361 ARG362 GLU363 GLU364 ASN365 HIS366 GLU367 LYS368 LEU369 LEU370 LYS371 ILE372 LEU373 ASP374 GLU375 LEU376 LEU377 ASP378 GLU379 VAL380 LYS381 LYS382 SER383
Unit 11 MET1 ARG2 PRO3 GLU4 ARG5 LEU6 THR7 VAL8 ARG9 ASN10 PHE11 LEU12 GLY13 LEU14 LYS15 ASN16 VAL17 ASP18 ILE19 GLU20 PHE21 GLN22 SER23 GLY24 ILE25 THR26 VAL27 VAL28 GLU29 GLY30 PRO31 ASN32 GLY33 ALA34 GLY35 LYS36 SER37 SER38 LEU39 PHE40 GLU41 ALA42 ILE43 SER44 PHE45 ALA46 LEU47 PHE48 GLY49 ASN50 GLY51 ILE52 ARG53 TYR54 PRO55 ASN56 SER57 TYR58 ASP59 TYR60 VAL61 ASN62 ARG63 ASN64 ALA65 VAL66 ASP67 GLY68 THR69 ALA70 ARG71 LEU72 VAL73 PHE74 GLN75 PHE76 GLU77 ARG78 GLY79 GLY80 LYS81 ARG82 TYR83 GLU84 ILE85 ILE86 ARG87 GLU88 ILE89 ASN90 ALA91 LEU92 GLN93 ARG94 LYS95 HIS96 ASN97 ALA98 LYS99 LEU100 SER101 GLU102 ILE103 LEU104 GLU105 ASN106 GLY107 LYS108 LYS109 ALA110 ALA111 ILE112 ALA113 ALA114 LYS115 PRO116 THR117 SER118 VAL119 LYS120 GLN121 GLU122 VAL123 GLU124 LYS125 ILE126 LEU127 GLY128 ILE129 GLU130 HIS131 ARG132 THR133 PHE134 ILE135 ARG136 THR137 VAL138 PHE139 LEU140 PRO141 GLN142 GLY143 GLU144 ILE145 ASP146 LYS147 LEU148 LEU149 ILE150 SER151 PRO152 PRO153 SER154 GLU155 ILE156 THR157 GLU158 ILE159 ILE160 SER161 ASP162 VAL163 PHE164 GLN165 SER166 LYS167 GLU168 THR169 LEU170 GLU171 LYS172 LEU173 GLU174 LYS175 LEU176 LEU177 LYS178 GLU179 LYS180 MET181 LYS182 LYS183 LEU184 GLU185 ASN186 GLU187 ILE188 SER189 LYS689 LYS690 LEU691 LYS692 GLU693 MET694 SER695 ASP696 GLU697 TYR698 ASN699 ASN700 LEU701 ASP702 LEU703 LEU704 ARG705 LYS706 TYR707 LEU708 PHE709 ASP710 LYS711 SER712 ASN713 PHE714 SER715 ARG716 TYR717 PHE718 THR719 GLY720 ARG721 VAL722 LEU723 GLU724 ALA725 VAL726 LEU727 LYS728 ARG729 THR730 LYS731 ALA732 TYR733 LEU734 ASP735 ILE736 LEU737 THR738 ASN739 GLY740 ARG741 PHE742 ASP743 ILE744 ASP745 PHE746 ASP747 ASP748 GLU749 LYS750 GLY751 GLY752 PHE753 ILE754 ILE755 LYS756 ASP757 TRP758 GLY759 ILE760 GLU761 ARG762 PRO763 ALA764 ARG765 GLY766 LEU767 SER768 GLY769 GLY770 GLU771 ARG772 ALA773 LEU774 ILE775 SER776 ILE777 SER778 LEU779 ALA780 MET781 SER782 LEU783 ALA784 GLU785 VAL786 ALA787 SER788 GLY789 ARG790 LEU791 ASP792 ALA793 PHE794 PHE795 ILE796 ASP797 GLU798 GLY799 PHE800 SER801 SER802 LEU803 ASP804 THR805 GLU806 ASN807 LYS808 GLU809 LYS810 ILE811 ALA812 SER813 VAL814 LEU815 LYS816 GLU817 LEU818 GLU819 ARG820 LEU821 ASN822 LYS823 VAL824 ILE825 VAL826 PHE827 ILE828 THR829 HIS830 ASP831 ARG832 GLU833 PHE834 SER835 GLU836 ALA837 PHE838 ASP839 ARG840 LYS841 LEU842 ARG843 ILE844 THR845 GLY846 GLY847 VAL848 VAL849 VAL850 ASN851
Unit 12 LYS348 LEU349 ASP350 TYR351 PHE352 GLU353 LEU354 PHE355 LYS356 GLU357 TYR358 LEU359 LYS360 LYS361 ARG362 GLU363 GLU364 ASN365 HIS366 GLU367 LYS368 LEU369 LEU370 LYS371 ILE372 LEU373 ASP374 GLU375 LEU376 LEU377 ASP378 GLU379 VAL380 LYS381 LYS382
Other macromolecules
Unit 1 DG1 DG2 DT3 DC4 DG5 DG6 DT7 DG8 DA9 DC10 DC11 DG12 DA13 DC14 DC15
Unit 2 DG16 DG17 DT18 DC19 DG20 DG21 DT22 DC23 DA24 DC25 DC26 DG27 DA28 DC29 DC30
Unit 7 DG1 DG2 DT3 DC4 DG5 DG6 DT7 DG8 DA9 DC10 DC11 DG12 DA13 DC14 DC15
Unit 8 DG16 DG17 DT18 DC19 DG20 DG21 DT22 DC23 DA24 DC25 DC26 DG27 DA28 DC29 DC30
Ligands
Unit 13 ANP901 MG902
Unit 14 ANP901 MG902
Unit 15 ANP901 MG902
Unit 16 ANP901 MG902
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany