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Sequence, Chains, Asymmetric and Biological Units

Title THE CRYSTAL STRUCTURE OF HUMAN ARGONAUTE2 BOUND TO A GUIDE A RNA CONTAINING SEED PAIRING FROM 2-7
Keywords MICRORNA, RNASE, AGO2, RNAI, GUIDE, TARGET, HYDROLASE-RNA CO
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4W5T     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PROTEIN ARGONAUTE-2  A 807 6471 0
2  RNA    B 16 332 0
3  DNA/RNA    D 10 195 0
4  Ligand   PROTEIN ARGONAUTE-2  A 5 0 29
5  Ligand   RNA (5'-R(*AP*CP*AP*UP*GP*UP*GP*AP*AP*A)-3')  D 1 0 1
6 Water     156 0 156
total       995 6998 186
Proteins
Unit 1 ALA22 PHE23 LYS24 PRO25 PRO26 PRO27 ARG28 PRO29 ASP30 PHE31 GLY32 THR33 SER34 GLY35 ARG36 THR37 ILE38 LYS39 LEU40 GLN41 ALA42 ASN43 PHE44 PHE45 GLU46 MET47 ASP48 ILE49 PRO50 LYS51 ILE52 ASP53 ILE54 TYR55 HIS56 TYR57 GLU58 LEU59 ASP60 ILE61 LYS62 PRO63 GLU64 LYS65 CYS66 PRO67 ARG68 ARG69 VAL70 ASN71 ARG72 GLU73 ILE74 VAL75 GLU76 HIS77 MET78 VAL79 GLN80 HIS81 PHE82 LYS83 THR84 GLN85 ILE86 PHE87 GLY88 ASP89 ARG90 LYS91 PRO92 VAL93 PHE94 ASP95 GLY96 ARG97 LYS98 ASN99 LEU100 TYR101 THR102 ALA103 MET104 PRO105 LEU106 PRO107 ILE108 GLY109 ARG110 ASP111 LYS112 VAL113 GLU114 LEU115 GLU116 VAL117 THR118 LEU119 PRO120 ILE127 PHE128 LYS129 VAL130 SER131 ILE132 LYS133 TRP134 VAL135 SER136 CYS137 VAL138 SER139 LEU140 GLN141 ALA142 LEU143 HIS144 ASP145 ALA146 LEU147 SER148 GLY149 ARG150 LEU151 PRO152 SER153 VAL154 PRO155 PHE156 GLU157 THR158 ILE159 GLN160 ALA161 LEU162 ASP163 VAL164 VAL165 MET166 ARG167 HIS168 LEU169 PRO170 SER171 MET172 ARG173 TYR174 THR175 PRO176 VAL177 GLY178 ARG179 SER180 PHE181 PHE182 THR183 ALA184 SER185 GLU186 GLY187 CYS188 SER189 ASN190 PRO191 LEU192 GLY193 GLY194 GLY195 ARG196 GLU197 VAL198 TRP199 PHE200 GLY201 PHE202 HIS203 GLN204 SER205 VAL206 ARG207 PRO208 SER209 LEU210 TRP211 LYS212 MET213 MET214 LEU215 ASN216 ILE217 ASP218 VAL219 SER220 ALA221 THR222 ALA223 PHE224 TYR225 LYS226 ALA227 GLN228 PRO229 VAL230 ILE231 GLU232 PHE233 VAL234 CYS235 GLU236 VAL237 LEU238 ASP239 PHE240 LYS241 SER242 ILE243 GLU244 GLU245 GLN246 GLN247 LYS248 PRO249 LEU250 THR251 ASP252 SER253 GLN254 ARG255 VAL256 LYS257 PHE258 THR259 LYS260 GLU261 ILE262 LYS263 GLY264 LEU265 LYS266 VAL267 GLU268 ILE269 THR270 HIS271 LYS276 ARG277 LYS278 TYR279 ARG280 VAL281 CYS282 ASN283 VAL284 THR285 ARG286 ARG287 PRO288 ALA289 SER290 HIS291 GLN292 THR293 PHE294 PRO295 LEU296 VAL304 GLU305 CYS306 THR307 VAL308 ALA309 GLN310 TYR311 PHE312 LYS313 ASP314 ARG315 HIS316 LYS317 LEU318 VAL319 LEU320 ARG321 TYR322 PRO323 HIS324 LEU325 PRO326 CYS327 LEU328 GLN329 VAL330 GLY331 GLN332 GLU333 GLN334 LYS335 HIS336 THR337 TYR338 LEU339 PRO340 LEU341 GLU342 VAL343 CYS344 ASN345 ILE346 VAL347 ALA348 GLY349 GLN350 ARG351 CYS352 ILE353 LYS354 LYS355 LEU356 THR357 ASP358 ASN359 GLN360 THR361 SER362 THR363 MET364 ILE365 ARG366 ALA367 THR368 ALA369 ARG370 SER371 ALA372 PRO373 ASP374 ARG375 GLN376 GLU377 GLU378 ILE379 SER380 LYS381 LEU382 MET383 ARG384 SER385 ALA386 ASP387 PHE388 ASN389 THR390 ASP391 PRO392 TYR393 VAL394 ARG395 GLU396 PHE397 GLY398 ILE399 MET400 VAL401 LYS402 ASP403 GLU404 MET405 THR406 ASP407 VAL408 THR409 GLY410 ARG411 VAL412 LEU413 GLN414 PRO415 PRO416 SER417 ILE418 LEU419 TYR420 GLY421 GLY422 ARG423 ASN424 LYS425 ALA426 ILE427 ALA428 THR429 PRO430 VAL431 GLN432 GLY433 VAL434 TRP435 ASP436 MET437 ARG438 ASN439 LYS440 GLN441 PHE442 HIS443 THR444 GLY445 ILE446 GLU447 ILE448 LYS449 VAL450 TRP451 ALA452 ILE453 ALA454 CYS455 PHE456 ALA457 PRO458 GLN459 ARG460 GLN461 CYS462 THR463 GLU464 VAL465 HIS466 LEU467 LYS468 SER469 PHE470 THR471 GLU472 GLN473 LEU474 ARG475 LYS476 ILE477 SER478 ARG479 ASP480 ALA481 GLY482 MET483 PRO484 ILE485 GLN486 GLY487 GLN488 PRO489 CYS490 PHE491 CYS492 LYS493 TYR494 ALA495 GLN496 GLY497 ALA498 ASP499 SER500 VAL501 GLU502 PRO503 MET504 PHE505 ARG506 HIS507 LEU508 LYS509 ASN510 THR511 TYR512 ALA513 GLY514 LEU515 GLN516 LEU517 VAL518 VAL519 VAL520 ILE521 LEU522 PRO523 GLY524 LYS525 THR526 PRO527 VAL528 TYR529 ALA530 GLU531 VAL532 LYS533 ARG534 VAL535 GLY536 ASP537 THR538 VAL539 LEU540 GLY541 MET542 ALA543 THR544 GLN545 CYS546 VAL547 GLN548 MET549 LYS550 ASN551 VAL552 GLN553 ARG554 THR555 THR556 PRO557 GLN558 THR559 LEU560 SER561 ASN562 LEU563 CYS564 LEU565 LYS566 ILE567 ASN568 VAL569 LYS570 LEU571 GLY572 GLY573 VAL574 ASN575 ASN576 ILE577 LEU578 LEU579 PRO580 GLN581 GLY582 ARG583 PRO584 PRO585 VAL586 PHE587 GLN588 GLN589 PRO590 VAL591 ILE592 PHE593 LEU594 GLY595 ALA596 ASP597 VAL598 THR599 HIS600 PRO601 PRO602 ALA603 GLY604 ASP605 GLY606 LYS607 LYS608 PRO609 SER610 ILE611 ALA612 ALA613 VAL614 VAL615 GLY616 SER617 MET618 ASP619 ALA620 HIS621 PRO622 ASN623 ARG624 TYR625 CYS626 ALA627 THR628 VAL629 ARG630 VAL631 GLN632 GLN633 HIS634 ARG635 GLN636 GLU637 ILE638 ILE639 GLN640 ASP641 LEU642 ALA643 ALA644 MET645 VAL646 ARG647 GLU648 LEU649 LEU650 ILE651 GLN652 PHE653 TYR654 LYS655 SER656 THR657 ARG658 PHE659 LYS660 PRO661 THR662 ARG663 ILE664 ILE665 PHE666 TYR667 ARG668 ASP669 GLY670 VAL671 SER672 GLU673 GLY674 GLN675 PHE676 GLN677 GLN678 VAL679 LEU680 HIS681 HIS682 GLU683 LEU684 LEU685 ALA686 ILE687 ARG688 GLU689 ALA690 CYS691 ILE692 LYS693 LEU694 GLU695 LYS696 ASP697 TYR698 GLN699 PRO700 GLY701 ILE702 THR703 PHE704 ILE705 VAL706 VAL707 GLN708 LYS709 ARG710 HIS711 HIS712 THR713 ARG714 LEU715 PHE716 CYS717 THR718 ASP719 LYS720 ASN721 GLU722 ARG723 VAL724 GLY725 LYS726 SER727 GLY728 ASN729 ILE730 PRO731 ALA732 GLY733 THR734 THR735 VAL736 ASP737 THR738 LYS739 ILE740 THR741 HIS742 PRO743 THR744 GLU745 PHE746 ASP747 PHE748 TYR749 LEU750 CYS751 SER752 HIS753 ALA754 GLY755 ILE756 GLN757 GLY758 THR759 SER760 ARG761 PRO762 SER763 HIS764 TYR765 HIS766 VAL767 LEU768 TRP769 ASP770 ASP771 ASN772 ARG773 PHE774 SER775 SER776 ASP777 GLU778 LEU779 GLN780 ILE781 LEU782 THR783 TYR784 GLN785 LEU786 CYS787 HIS788 THR789 TYR790 VAL791 ARG792 CYS793 THR794 ARG795 SER796 VAL797 SER798 ILE799 PRO800 ALA801 PRO802 ALA803 TYR804 TYR805 ALA806 HIS807 LEU808 VAL809 ALA810 PHE811 ARG812 ALA813 ARG814 TYR815 HIS816 LEU817 VAL818 ASP819 LYS820 GLU821 GLY836 ARG837 ASP838 HIS839 GLN840 ALA841 LEU842 ALA843 LYS844 ALA845 VAL846 GLN847 VAL848 HIS849 GLN850 ASP851 THR852 LEU853 ARG854 THR855 MET856 TYR857 PHE858 ALA859
Nucleic acids
Unit 2 U1 U2 C3 A4 C5 A6 U7 U8 G9 C10 C11 C12 A13 A14 U20 U21
Unit 3 A1 C2 A3 U4 G5 U6 G7 A8 A9 A10
Ligands
Unit 4 MG901 IPH902 IPH903 IPH904 IPH905
Unit 5 MG101
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany