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Sequence, Chains, Asymmetric and Biological Units

Title ARCHITECTURE OF THE RNA POLYMERASE II-MEDIATOR CORE TRANSCRI INITIATION COMPLEX
Keywords TRANSCRIPTION, TRANSCRIPTION INITIATION, RNA POLYMERASE II, TRANSCRIPTION FACTORS
Experiment ELECTRON MICROSCOPY
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4V1M     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1  A 1422 11174 0
2  Protein   DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2  B 1156 9143 0
3  Protein   DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3  C 266 2095 0
4  Protein   DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUN 1  E 214 1752 0
5  Protein   DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUN 2  F 84 679 0
6  Protein   DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUN 3  H 133 1068 0
7  Protein   DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUN 5  I 119 971 0
8  Protein   DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUN 5  J 65 532 0
9  Protein   DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11  K 115 920 0
10  Protein   DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUN 4  L 46 363 0
11  Other macromolecule   5'-D(*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP)-3'  N 10 207 0
12  RNA    P 6 130 0
13  DNA    T 20 384 20
14  Ligand   DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1  A 3 0 3
15  Ligand   DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2  B 1 0 1
16  Ligand   DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3  C 1 0 1
17  Ligand   DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUN 5  I 2 0 2
18  Ligand   DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUN 5  J 1 0 1
19  Ligand   DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUN 4  L 1 0 1
total       3665 29418 29
Proteins
Unit 1 GLY3 GLN4 GLN5 TYR6 SER7 SER8 ALA9 PRO10 LEU11 ARG12 THR13 VAL14 LYS15 GLU16 VAL17 GLN18 PHE19 GLY20 LEU21 PHE22 SER23 PRO24 GLU25 GLU26 VAL27 ARG28 ALA29 ILE30 SER31 VAL32 ALA33 LYS34 ILE35 ARG36 PHE37 PRO38 GLU39 THR40 MET41 ASP42 GLU43 THR44 GLN45 THR46 ARG47 ALA48 LYS49 ILE50 GLY51 GLY52 LEU53 ASN54 ASP55 PRO56 ARG57 LEU58 GLY59 SER60 ILE61 ASP62 ARG63 ASN64 LEU65 LYS66 CYS67 GLN68 THR69 CYS70 GLN71 GLU72 GLY73 MET74 ASN75 GLU76 CYS77 PRO78 GLY79 HIS80 PHE81 GLY82 HIS83 ILE84 ASP85 LEU86 ALA87 LYS88 PRO89 VAL90 PHE91 HIS92 VAL93 GLY94 PHE95 ILE96 ALA97 LYS98 ILE99 LYS100 LYS101 VAL102 CYS103 GLU104 CYS105 VAL106 CYS107 MET108 HIS109 CYS110 GLY111 LYS112 LEU113 LEU114 LEU115 ASP116 GLU117 HIS118 ASN119 GLU120 LEU121 MET122 ARG123 GLN124 ALA125 LEU126 ALA127 ILE128 LYS129 ASP130 SER131 LYS132 LYS133 ARG134 PHE135 ALA136 ALA137 ILE138 TRP139 THR140 LEU141 CYS142 LYS143 THR144 LYS145 MET146 VAL147 CYS148 GLU149 THR150 ASP151 VAL152 PRO153 SER154 GLU155 ASP156 ASP157 PRO158 THR159 GLN160 LEU161 VAL162 SER163 ARG164 GLY165 GLY166 CYS167 GLY168 ASN169 THR170 GLN171 PRO172 THR173 ILE174 ARG175 LYS176 ASP177 GLY178 LEU179 LYS180 LEU181 VAL182 GLY183 SER184 TRP185 LYS186 LYS187 ASP188 ARG189 ALA190 THR191 GLY192 ASP193 ALA194 ASP195 GLU196 PRO197 GLU198 LEU199 ARG200 VAL201 LEU202 SER203 THR204 GLU205 GLU206 ILE207 LEU208 ASN209 ILE210 PHE211 LYS212 HIS213 ILE214 SER215 VAL216 LYS217 ASP218 PHE219 THR220 SER221 LEU222 GLY223 PHE224 ASN225 GLU226 VAL227 PHE228 SER229 ARG230 PRO231 GLU232 TRP233 MET234 ILE235 LEU236 THR237 CYS238 LEU239 PRO240 VAL241 PRO242 PRO243 PRO244 PRO245 VAL246 ARG247 PRO248 SER249 ILE250 SER251 PHE252 ASN253 GLU254 SER255 GLN256 ARG257 GLY258 GLU259 ASP260 ASP261 LEU262 THR263 PHE264 LYS265 LEU266 ALA267 ASP268 ILE269 LEU270 LYS271 ALA272 ASN273 ILE274 SER275 LEU276 GLU277 THR278 LEU279 GLU280 HIS281 ASN282 GLY283 ALA284 PRO285 HIS286 HIS287 ALA288 ILE289 GLU290 GLU291 ALA292 GLU293 SER294 LEU295 LEU296 GLN297 PHE298 HIS299 VAL300 ALA301 THR302 TYR303 MET304 ASP305 ASN306 ASP307 ILE308 ALA309 GLY310 GLN311 PRO312 GLN313 ALA314 LEU315 GLN316 LYS317 SER318 GLY319 ARG320 PRO321 VAL322 LYS323 SER324 ILE325 ARG326 ALA327 ARG328 LEU329 LYS330 GLY331 LYS332 GLU333 GLY334 ARG335 ILE336 ARG337 GLY338 ASN339 LEU340 MET341 GLY342 LYS343 ARG344 VAL345 ASP346 PHE347 SER348 ALA349 ARG350 THR351 VAL352 ILE353 SER354 GLY355 ASP356 PRO357 ASN358 LEU359 GLU360 LEU361 ASP362 GLN363 VAL364 GLY365 VAL366 PRO367 LYS368 SER369 ILE370 ALA371 LYS372 THR373 LEU374 THR375 TYR376 PRO377 GLU378 VAL379 VAL380 THR381 PRO382 TYR383 ASN384 ILE385 ASP386 ARG387 LEU388 THR389 GLN390 LEU391 VAL392 ARG393 ASN394 GLY395 PRO396 ASN397 GLU398 HIS399 PRO400 GLY401 ALA402 LYS403 TYR404 VAL405 ILE406 ARG407 ASP408 SER409 GLY410 ASP411 ARG412 ILE413 ASP414 LEU415 ARG416 TYR417 SER418 LYS419 ARG420 ALA421 GLY422 ASP423 ILE424 GLN425 LEU426 GLN427 TYR428 GLY429 TRP430 LYS431 VAL432 GLU433 ARG434 HIS435 ILE436 MET437 ASP438 ASN439 ASP440 PRO441 VAL442 LEU443 PHE444 ASN445 ARG446 GLN447 PRO448 SER449 LEU450 HIS451 LYS452 MET453 SER454 MET455 MET456 ALA457 HIS458 ARG459 VAL460 LYS461 VAL462 ILE463 PRO464 TYR465 SER466 THR467 PHE468 ARG469 LEU470 ASN471 LEU472 SER473 VAL474 THR475 SER476 PRO477 TYR478 ASN479 ALA480 ASP481 PHE482 ASP483 GLY484 ASP485 GLU486 MET487 ASN488 LEU489 HIS490 VAL491 PRO492 GLN493 SER494 GLU495 GLU496 THR497 ARG498 ALA499 GLU500 LEU501 SER502 GLN503 LEU504 CYS505 ALA506 VAL507 PRO508 LEU509 GLN510 ILE511 VAL512 SER513 PRO514 GLN515 SER516 ASN517 LYS518 PRO519 CYS520 MET521 GLY522 ILE523 VAL524 GLN525 ASP526 THR527 LEU528 CYS529 GLY530 ILE531 ARG532 LYS533 LEU534 THR535 LEU536 ARG537 ASP538 THR539 PHE540 ILE541 GLU542 LEU543 ASP544 GLN545 VAL546 LEU547 ASN548 MET549 LEU550 TYR551 TRP552 VAL553 PRO554 ASP555 TRP556 ASP557 GLY558 VAL559 ILE560 PRO561 THR562 PRO563 ALA564 ILE565 ILE566 LYS567 PRO568 LYS569 PRO570 LEU571 TRP572 SER573 GLY574 LYS575 GLN576 ILE577 LEU578 SER579 VAL580 ALA581 ILE582 PRO583 ASN584 GLY585 ILE586 HIS587 LEU588 GLN589 ARG590 PHE591 ASP592 GLU593 GLY594 THR595 THR596 LEU597 LEU598 SER599 PRO600 LYS601 ASP602 ASN603 GLY604 MET605 LEU606 ILE607 ILE608 ASP609 GLY610 GLN611 ILE612 ILE613 PHE614 GLY615 VAL616 VAL617 GLU618 LYS619 LYS620 THR621 VAL622 GLY623 SER624 SER625 ASN626 GLY627 GLY628 LEU629 ILE630 HIS631 VAL632 VAL633 THR634 ARG635 GLU636 LYS637 GLY638 PRO639 GLN640 VAL641 CYS642 ALA643 LYS644 LEU645 PHE646 GLY647 ASN648 ILE649 GLN650 LYS651 VAL652 VAL653 ASN654 PHE655 TRP656 LEU657 LEU658 HIS659 ASN660 GLY661 PHE662 SER663 THR664 GLY665 ILE666 GLY667 ASP668 THR669 ILE670 ALA671 ASP672 GLY673 PRO674 THR675 MET676 ARG677 GLU678 ILE679 THR680 GLU681 THR682 ILE683 ALA684 GLU685 ALA686 LYS687 LYS688 LYS689 VAL690 LEU691 ASP692 VAL693 THR694 LYS695 GLU696 ALA697 GLN698 ALA699 ASN700 LEU701 LEU702 THR703 ALA704 LYS705 HIS706 GLY707 MET708 THR709 LEU710 ARG711 GLU712 SER713 PHE714 GLU715 ASP716 ASN717 VAL718 VAL719 ARG720 PHE721 LEU722 ASN723 GLU724 ALA725 ARG726 ASP727 LYS728 ALA729 GLY730 ARG731 LEU732 ALA733 GLU734 VAL735 ASN736 LEU737 LYS738 ASP739 LEU740 ASN741 ASN742 VAL743 LYS744 GLN745 MET746 VAL747 MET748 ALA749 GLY750 SER751 LYS752 GLY753 SER754 PHE755 ILE756 ASN757 ILE758 ALA759 GLN760 MET761 SER762 ALA763 CYS764 VAL765 GLY766 GLN767 GLN768 SER769 VAL770 GLU771 GLY772 LYS773 ARG774 ILE775 ALA776 PHE777 GLY778 PHE779 VAL780 ASP781 ARG782 THR783 LEU784 PRO785 HIS786 PHE787 SER788 LYS789 ASP790 ASP791 TYR792 SER793 PRO794 GLU795 SER796 LYS797 GLY798 PHE799 VAL800 GLU801 ASN802 SER803 TYR804 LEU805 ARG806 GLY807 LEU808 THR809 PRO810 GLN811 GLU812 PHE813 PHE814 PHE815 HIS816 ALA817 MET818 GLY819 GLY820 ARG821 GLU822 GLY823 LEU824 ILE825 ASP826 THR827 ALA828 VAL829 LYS830 THR831 ALA832 GLU833 THR834 GLY835 TYR836 ILE837 GLN838 ARG839 ARG840 LEU841 VAL842 LYS843 ALA844 LEU845 GLU846 ASP847 ILE848 MET849 VAL850 HIS851 TYR852 ASP853 ASN854 THR855 THR856 ARG857 ASN858 SER859 LEU860 GLY861 ASN862 VAL863 ILE864 GLN865 PHE866 ILE867 TYR868 GLY869 GLU870 ASP871 GLY872 MET873 ASP874 ALA875 ALA876 HIS877 ILE878 GLU879 LYS880 GLN881 SER882 LEU883 ASP884 THR885 ILE886 GLY887 GLY888 SER889 ASP890 ALA891 ALA892 PHE893 GLU894 LYS895 ARG896 TYR897 ARG898 VAL899 ASP900 LEU901 LEU902 ASN903 THR904 ASP905 HIS906 THR907 LEU908 ASP909 PRO910 SER911 LEU912 LEU913 GLU914 SER915 GLY916 SER917 GLU918 ILE919 LEU920 GLY921 ASP922 LEU923 LYS924 LEU925 GLN926 VAL927 LEU928 LEU929 ASP930 GLU931 GLU932 TYR933 LYS934 GLN935 LEU936 VAL937 LYS938 ASP939 ARG940 LYS941 PHE942 LEU943 ARG944 GLU945 VAL946 PHE947 VAL948 ASP949 GLY950 GLU951 ALA952 ASN953 TRP954 PRO955 LEU956 PRO957 VAL958 ASN959 ILE960 ARG961 ARG962 ILE963 ILE964 GLN965 ASN966 ALA967 GLN968 GLN969 THR970 PHE971 HIS972 ILE973 ASP974 HIS975 THR976 LYS977 PRO978 SER979 ASP980 LEU981 THR982 ILE983 LYS984 ASP985 ILE986 VAL987 LEU988 GLY989 VAL990 LYS991 ASP992 LEU993 GLN994 GLU995 ASN996 LEU997 LEU998 VAL999 LEU1000 ARG1001 GLY1002 LYS1003 ASN1004 GLU1005 ILE1006 ILE1007 GLN1008 ASN1009 ALA1010 GLN1011 ARG1012 ASP1013 ALA1014 VAL1015 THR1016 LEU1017 PHE1018 CYS1019 CYS1020 LEU1021 LEU1022 ARG1023 SER1024 ARG1025 LEU1026 ALA1027 THR1028 ARG1029 ARG1030 VAL1031 LEU1032 GLN1033 GLU1034 TYR1035 ARG1036 LEU1037 THR1038 LYS1039 GLN1040 ALA1041 PHE1042 ASP1043 TRP1044 VAL1045 LEU1046 SER1047 ASN1048 ILE1049 GLU1050 ALA1051 GLN1052 PHE1053 LEU1054 ARG1055 SER1056 VAL1057 VAL1058 HIS1059 PRO1060 GLY1061 GLU1062 MET1063 VAL1064 GLY1065 VAL1066 LEU1067 ALA1068 ALA1069 GLN1070 SER1071 ILE1072 GLY1073 GLU1074 PRO1075 ALA1076 THR1077 GLN1078 MET1079 THR1080 LYS1092 LYS1093 VAL1094 THR1095 SER1096 GLY1097 VAL1098 PRO1099 ARG1100 LEU1101 LYS1102 GLU1103 ILE1104 LEU1105 ASN1106 VAL1107 ALA1108 LYS1109 ASN1110 MET1111 LYS1112 THR1113 PRO1114 SER1115 LEU1116 THR1117 VAL1118 TYR1119 LEU1120 GLU1121 PRO1122 GLY1123 HIS1124 ALA1125 ALA1126 ASP1127 GLN1128 GLU1129 GLN1130 ALA1131 LYS1132 LEU1133 ILE1134 ARG1135 SER1136 ALA1137 ILE1138 GLU1139 HIS1140 THR1141 THR1142 LEU1143 LYS1144 SER1145 VAL1146 THR1147 ILE1148 ALA1149 SER1150 GLU1151 ILE1152 TYR1153 TYR1154 ASP1155 PRO1156 ASP1157 PRO1158 ARG1159 SER1160 THR1161 VAL1162 ILE1163 PRO1164 GLU1165 ASP1166 GLU1167 GLU1168 ILE1169 ILE1170 GLN1171 LEU1172 HIS1173 PHE1174 SER1175 LEU1176 GLN1187 GLN1188 SER1189 PRO1190 TRP1191 LEU1192 LEU1193 ARG1194 LEU1195 GLU1196 LEU1197 ASP1198 ARG1199 ALA1200 ALA1201 MET1202 ASN1203 ASP1204 LYS1205 ASP1206 LEU1207 THR1208 MET1209 GLY1210 GLN1211 VAL1212 GLY1213 GLU1214 ARG1215 ILE1216 LYS1217 GLN1218 THR1219 PHE1220 LYS1221 ASN1222 ASP1223 LEU1224 PHE1225 VAL1226 ILE1227 TRP1228 SER1229 GLU1230 ASP1231 ASN1232 ASP1233 GLU1234 LYS1235 LEU1236 ILE1237 ILE1238 ARG1239 CYS1240 ARG1241 VAL1242 VAL1243 ALA1254 GLU1255 GLU1256 ASP1257 HIS1258 MET1259 LEU1260 LYS1261 LYS1262 ILE1263 GLU1264 ASN1265 THR1266 MET1267 LEU1268 GLU1269 ASN1270 ILE1271 THR1272 LEU1273 ARG1274 GLY1275 VAL1276 GLU1277 ASN1278 ILE1279 GLU1280 ARG1281 VAL1282 VAL1283 MET1284 MET1285 LYS1286 TYR1287 ASP1288 ARG1289 LYS1290 VAL1291 PRO1292 SER1293 PRO1294 THR1295 GLY1296 GLU1297 TYR1298 VAL1299 LYS1300 GLU1301 PRO1302 GLU1303 TRP1304 VAL1305 LEU1306 GLU1307 THR1308 ASP1309 GLY1310 VAL1311 ASN1312 LEU1313 SER1314 GLU1315 VAL1316 MET1317 THR1318 VAL1319 PRO1320 GLY1321 ILE1322 ASP1323 PRO1324 THR1325 ARG1326 ILE1327 TYR1328 THR1329 ASN1330 SER1331 PHE1332 ILE1333 ASP1334 ILE1335 MET1336 GLU1337 VAL1338 LEU1339 GLY1340 ILE1341 GLU1342 ALA1343 GLY1344 ARG1345 ALA1346 ALA1347 LEU1348 TYR1349 LYS1350 GLU1351 VAL1352 TYR1353 ASN1354 VAL1355 ILE1356 ALA1357 SER1358 ASP1359 GLY1360 SER1361 TYR1362 VAL1363 ASN1364 TYR1365 ARG1366 HIS1367 MET1368 ALA1369 LEU1370 LEU1371 VAL1372 ASP1373 VAL1374 MET1375 THR1376 THR1377 GLN1378 GLY1379 GLY1380 LEU1381 THR1382 SER1383 VAL1384 THR1385 ARG1386 HIS1387 GLY1388 PHE1389 ASN1390 ARG1391 SER1392 ASN1393 THR1394 GLY1395 ALA1396 LEU1397 MET1398 ARG1399 CYS1400 SER1401 PHE1402 GLU1403 GLU1404 THR1405 VAL1406 GLU1407 ILE1408 LEU1409 PHE1410 GLU1411 ALA1412 GLY1413 ALA1414 SER1415 ALA1416 GLU1417 LEU1418 ASP1419 ASP1420 CYS1421 ARG1422 GLY1423 VAL1424 SER1425 GLU1426 ASN1427 VAL1428 ILE1429 LEU1430 GLY1431 GLN1432 MET1433 ALA1434 PRO1435 ILE1436 GLY1437 THR1438 GLY1439 ALA1440 PHE1441 ASP1442 VAL1443 MET1444 ILE1445 ASP1446 GLU1447 GLU1448 SER1449 LEU1450 VAL1451 LYS1452 TYR1453 MET1454 PRO1455
Unit 2 ASP20 GLU21 SER22 ALA23 PRO24 ILE25 THR26 ALA27 GLU28 ASP29 SER30 TRP31 ALA32 VAL33 ILE34 SER35 ALA36 PHE37 PHE38 ARG39 GLU40 LYS41 GLY42 LEU43 VAL44 SER45 GLN46 GLN47 LEU48 ASP49 SER50 PHE51 ASN52 GLN53 PHE54 VAL55 ASP56 TYR57 THR58 LEU59 GLN60 ASP61 ILE62 ILE63 CYS64 GLU65 ASP66 SER67 THR68 LEU69 ILE70 LEU71 GLU72 GLN73 LEU74 ALA75 GLN76 HIS77 THR78 THR79 GLU80 SER81 ASP82 ASN83 ILE84 SER85 ARG86 LYS87 TYR88 GLU89 ILE90 SER91 PHE92 GLY93 LYS94 ILE95 TYR96 VAL97 THR98 LYS99 PRO100 MET101 VAL102 ASN103 GLU104 SER105 ASP106 GLY107 VAL108 THR109 HIS110 ALA111 LEU112 TYR113 PRO114 GLN115 GLU116 ALA117 ARG118 LEU119 ARG120 ASN121 LEU122 THR123 TYR124 SER125 SER126 GLY127 LEU128 PHE129 VAL130 ASP131 VAL132 LYS133 LYS134 ARG135 THR136 TYR137 GLU138 ALA139 ILE140 ASP141 GLU146 LEU147 LYS148 TYR149 GLU150 LEU151 GLY163 LYS164 VAL165 PHE166 ILE167 GLY168 ARG169 LEU170 PRO171 ILE172 MET173 LEU174 ARG175 SER176 LYS177 ASN178 CYS179 TYR180 LEU181 SER182 GLU183 ALA184 THR185 GLU186 SER187 ASP188 LEU189 TYR190 LYS191 LEU192 LYS193 GLU194 CYS195 PRO196 PHE197 ASP198 MET199 GLY200 GLY201 TYR202 PHE203 ILE204 ILE205 ASN206 GLY207 SER208 GLU209 LYS210 VAL211 LEU212 ILE213 ALA214 GLN215 GLU216 ARG217 SER218 ALA219 GLY220 ASN221 ILE222 VAL223 GLN224 VAL225 PHE226 LYS227 LYS228 ALA229 ALA230 PRO231 SER232 PRO233 ILE234 SER235 HIS236 VAL237 ALA238 GLU239 ILE240 ARG241 SER242 ALA243 LEU244 GLU245 LYS246 GLY247 SER248 ARG249 PHE250 ILE251 SER252 THR253 LEU254 GLN255 VAL256 LYS257 LEU258 TYR259 GLY260 ARG261 GLU262 GLY263 SER264 SER265 ALA266 ARG267 THR268 ILE269 LYS270 ALA271 THR272 LEU273 PRO274 TYR275 ILE276 LYS277 GLN278 ASP279 ILE280 PRO281 ILE282 VAL283 ILE284 ILE285 PHE286 ARG287 ALA288 LEU289 GLY290 ILE291 ILE292 PRO293 ASP294 GLY295 GLU296 ILE297 LEU298 GLU299 HIS300 ILE301 CYS302 TYR303 ASP304 VAL305 ASN306 ASP307 TRP308 GLN309 MET310 LEU311 GLU312 MET313 LEU314 LYS315 PRO316 CYS317 VAL318 GLU319 ASP320 GLY321 PHE322 VAL323 ILE324 GLN325 ASP326 ARG327 GLU328 THR329 ALA330 LEU331 ASP332 PHE333 ILE334 GLY335 ARG336 ARG337 GLY338 THR339 ALA340 LEU341 GLY342 ILE343 LYS344 LYS345 GLU346 LYS347 ARG348 ILE349 GLN350 TYR351 ALA352 LYS353 ASP354 ILE355 LEU356 GLN357 LYS358 GLU359 PHE360 LEU361 PRO362 HIS363 ILE364 THR365 GLN366 LEU367 GLU368 GLY369 PHE370 GLU371 SER372 ARG373 LYS374 ALA375 PHE376 PHE377 LEU378 GLY379 TYR380 MET381 ILE382 ASN383 ARG384 LEU385 LEU386 LEU387 CYS388 ALA389 LEU390 ASP391 ARG392 LYS393 ASP394 GLN395 ASP396 ASP397 ARG398 ASP399 HIS400 PHE401 GLY402 LYS403 LYS404 ARG405 LEU406 ASP407 LEU408 ALA409 GLY410 PRO411 LEU412 LEU413 ALA414 GLN415 LEU416 PHE417 LYS418 THR419 LEU420 PHE421 LYS422 LYS423 LEU424 THR425 LYS426 ASP427 ILE428 PHE429 ARG430 TYR431 MET432 GLN433 ARG434 THR435 VAL436 GLU437 GLU438 ALA439 HIS440 ASP441 PHE442 ASN443 MET444 LYS445 LEU446 ALA447 ILE448 ASN449 ALA450 LYS451 THR452 ILE453 THR454 SER455 GLY456 LEU457 LYS458 TYR459 ALA460 LEU461 ALA462 THR463 GLY464 ASN465 TRP466 GLY467 GLU468 GLN469 LYS470 LYS471 ALA472 MET473 SER474 SER475 ARG476 ALA477 GLY478 VAL479 SER480 GLN481 VAL482 LEU483 ASN484 ARG485 TYR486 THR487 TYR488 SER489 SER490 THR491 LEU492 SER493 HIS494 LEU495 ARG496 ARG497 THR498 ASN499 THR500 PRO501 ILE502 ALA509 LYS510 PRO511 ARG512 GLN513 LEU514 HIS515 ASN516 THR517 HIS518 TRP519 GLY520 LEU521 VAL522 CYS523 PRO524 ALA525 GLU526 THR527 PRO528 GLU529 GLY530 GLN531 ALA532 CYS533 GLY534 LEU535 VAL536 LYS537 ASN538 LEU539 SER540 LEU541 MET542 SER543 CYS544 ILE545 SER546 VAL547 GLY548 THR549 ASP550 PRO551 MET552 PRO553 ILE554 ILE555 THR556 PHE557 LEU558 SER559 GLU560 TRP561 GLY562 MET563 GLU564 PRO565 LEU566 GLU567 ASP568 TYR569 VAL570 PRO571 HIS572 GLN573 SER574 PRO575 ASP576 ALA577 THR578 ARG579 VAL580 PHE581 VAL582 ASN583 GLY584 VAL585 TRP586 HIS587 GLY588 VAL589 HIS590 ARG591 ASN592 PRO593 ALA594 ARG595 LEU596 MET597 GLU598 THR599 LEU600 ARG601 THR602 LEU603 ARG604 ARG605 LYS606 GLY607 ASP608 ILE609 ASN610 PRO611 GLU612 VAL613 SER614 MET615 ILE616 ARG617 ASP618 ILE619 ARG620 GLU621 LYS622 GLU623 LEU624 LYS625 ILE626 PHE627 THR628 ASP629 ALA630 GLY631 ARG632 VAL633 TYR634 ARG635 PRO636 LEU637 PHE638 ILE639 VAL640 GLU641 ASP642 ASP643 GLU644 SER645 LEU646 GLY647 HIS648 LYS649 GLU650 LEU651 LYS652 VAL653 ARG654 LYS655 GLY656 HIS657 ILE658 ALA659 LYS660 LEU661 MET662 ALA663 THR664 GLU665 TYR666 GLN667 ASP668 GLU678 TYR679 THR680 TRP681 SER682 SER683 LEU684 LEU685 ASN686 GLU687 GLY688 LEU689 VAL690 GLU691 TYR692 ILE693 ASP694 ALA695 GLU696 GLU697 GLU698 GLU699 SER700 ILE701 LEU702 ILE703 ALA704 MET705 GLN706 PRO707 GLU708 ASP709 LEU710 GLU711 PRO712 ALA713 GLU714 ALA715 ASP722 VAL723 ASP724 PRO725 ALA726 LYS727 ARG728 ILE729 ARG730 VAL731 SER732 HIS733 HIS734 ALA735 THR736 THR737 PHE738 THR739 HIS740 CYS741 GLU742 ILE743 HIS744 PRO745 SER746 MET747 ILE748 LEU749 GLY750 VAL751 ALA752 ALA753 SER754 ILE755 ILE756 PRO757 PHE758 PRO759 ASP760 HIS761 ASN762 GLN763 SER764 PRO765 ARG766 ASN767 THR768 TYR769 GLN770 SER771 ALA772 MET773 GLY774 LYS775 GLN776 ALA777 MET778 GLY779 VAL780 PHE781 LEU782 THR783 ASN784 TYR785 ASN786 VAL787 ARG788 MET789 ASP790 THR791 MET792 ALA793 ASN794 ILE795 LEU796 TYR797 TYR798 PRO799 GLN800 LYS801 PRO802 LEU803 GLY804 THR805 THR806 ARG807 ALA808 MET809 GLU810 TYR811 LEU812 LYS813 PHE814 ARG815 GLU816 LEU817 PRO818 ALA819 GLY820 GLN821 ASN822 ALA823 ILE824 VAL825 ALA826 ILE827 ALA828 CYS829 TYR830 SER831 GLY832 TYR833 ASN834 GLN835 GLU836 ASP837 SER838 MET839 ILE840 MET841 ASN842 GLN843 SER844 SER845 ILE846 ASP847 ARG848 GLY849 LEU850 PHE851 ARG852 SER853 LEU854 PHE855 PHE856 ARG857 SER858 TYR859 MET860 ASP861 GLN862 GLU863 LYS864 LYS865 TYR866 GLY867 MET868 SER869 ILE870 THR871 GLU872 THR873 PHE874 GLU875 LYS876 PRO877 GLN878 ARG879 THR880 ASN881 THR882 LEU883 ARG884 MET885 LYS886 HIS887 GLY888 THR889 TYR890 ASP891 LYS892 LEU893 ASP894 ASP895 ASP896 GLY897 LEU898 ILE899 ALA900 PRO901 GLY902 VAL903 ARG904 VAL905 SER906 GLY907 GLU908 ASP909 VAL910 ILE911 ILE912 GLY913 LYS914 THR915 THR916 PRO917 ILE918 SER919 SER933 LYS934 ARG935 ASP936 ALA937 SER938 THR939 PRO940 LEU941 ARG942 SER943 THR944 GLU945 ASN946 GLY947 ILE948 VAL949 ASP950 GLN951 VAL952 LEU953 VAL954 THR955 THR956 ASN957 GLN958 ASP959 GLY960 LEU961 LYS962 PHE963 VAL964 LYS965 VAL966 ARG967 VAL968 ARG969 THR970 THR971 LYS972 ILE973 PRO974 GLN975 ILE976 GLY977 ASP978 LYS979 PHE980 ALA981 SER982 ARG983 HIS984 GLY985 GLN986 LYS987 GLY988 THR989 ILE990 GLY991 ILE992 THR993 TYR994 ARG995 ARG996 GLU997 ASP998 MET999 PRO1000 PHE1001 THR1002 ALA1003 GLU1004 GLY1005 ILE1006 VAL1007 PRO1008 ASP1009 LEU1010 ILE1011 ILE1012 ASN1013 PRO1014 HIS1015 ALA1016 ILE1017 PRO1018 SER1019 ARG1020 MET1021 THR1022 VAL1023 ALA1024 HIS1025 LEU1026 ILE1027 GLU1028 CYS1029 LEU1030 LEU1031 SER1032 LYS1033 VAL1034 ALA1035 ALA1036 LEU1037 SER1038 GLY1039 ASN1040 GLU1041 GLY1042 ASP1043 ALA1044 SER1045 PRO1046 PHE1047 THR1048 ASP1049 ILE1050 THR1051 VAL1052 GLU1053 GLY1054 ILE1055 SER1056 LYS1057 LEU1058 LEU1059 ARG1060 GLU1061 HIS1062 GLY1063 TYR1064 GLN1065 SER1066 ARG1067 GLY1068 PHE1069 GLU1070 VAL1071 MET1072 TYR1073 ASN1074 GLY1075 HIS1076 THR1077 GLY1078 LYS1079 LYS1080 LEU1081 MET1082 ALA1083 GLN1084 ILE1085 PHE1086 PHE1087 GLY1088 PRO1089 THR1090 TYR1091 TYR1092 GLN1093 ARG1094 LEU1095 ARG1096 HIS1097 MET1098 VAL1099 ASP1100 ASP1101 LYS1102 ILE1103 HIS1104 ALA1105 ARG1106 ALA1107 ARG1108 GLY1109 PRO1110 MET1111 GLN1112 VAL1113 LEU1114 THR1115 ARG1116 GLN1117 PRO1118 VAL1119 GLU1120 GLY1121 ARG1122 SER1123 ARG1124 ASP1125 GLY1126 GLY1127 LEU1128 ARG1129 PHE1130 GLY1131 GLU1132 MET1133 GLU1134 ARG1135 ASP1136 CYS1137 MET1138 ILE1139 ALA1140 HIS1141 GLY1142 ALA1143 ALA1144 SER1145 PHE1146 LEU1147 LYS1148 GLU1149 ARG1150 LEU1151 MET1152 GLU1153 ALA1154 SER1155 ASP1156 ALA1157 PHE1158 ARG1159 VAL1160 HIS1161 ILE1162 CYS1163 GLY1164 ILE1165 CYS1166 GLY1167 LEU1168 MET1169 THR1170 VAL1171 ILE1172 ALA1173 LYS1174 LEU1175 ASN1176 HIS1177 ASN1178 GLN1179 PHE1180 GLU1181 CYS1182 LYS1183 GLY1184 CYS1185 ASP1186 ASN1187 LYS1188 ILE1189 ASP1190 ILE1191 TYR1192 GLN1193 ILE1194 HIS1195 ILE1196 PRO1197 TYR1198 ALA1199 ALA1200 LYS1201 LEU1202 LEU1203 PHE1204 GLN1205 GLU1206 LEU1207 MET1208 ALA1209 MET1210 ASN1211 ILE1212 THR1213 PRO1214 ARG1215 LEU1216 TYR1217 THR1218 ASP1219 ARG1220 SER1221 ARG1222 ASP1223 PHE1224
Unit 3 GLU3 GLU4 GLY5 PRO6 GLN7 VAL8 LYS9 ILE10 ARG11 GLU12 ALA13 SER14 LYS15 ASP16 ASN17 VAL18 ASP19 PHE20 ILE21 LEU22 SER23 ASN24 VAL25 ASP26 LEU27 ALA28 MET29 ALA30 ASN31 SER32 LEU33 ARG34 ARG35 VAL36 MET37 ILE38 ALA39 GLU40 ILE41 PRO42 THR43 LEU44 ALA45 ILE46 ASP47 SER48 VAL49 GLU50 VAL51 GLU52 THR53 ASN54 THR55 THR56 VAL57 LEU58 ALA59 ASP60 GLU61 PHE62 ILE63 ALA64 HIS65 ARG66 LEU67 GLY68 LEU69 ILE70 PRO71 LEU72 GLN73 SER74 MET75 ASP76 ILE77 GLU78 GLN79 LEU80 GLU81 TYR82 SER83 ARG84 ASP85 CYS86 PHE87 CYS88 GLU89 ASP90 HIS91 CYS92 ASP93 LYS94 CYS95 SER96 VAL97 VAL98 LEU99 THR100 LEU101 GLN102 ALA103 PHE104 GLY105 GLU106 SER107 GLU108 SER109 THR110 THR111 ASN112 VAL113 TYR114 SER115 LYS116 ASP117 LEU118 VAL119 ILE120 VAL121 SER122 ASN123 LEU124 MET125 GLY126 ARG127 ASN128 ILE129 GLY130 HIS131 PRO132 ILE133 ILE134 GLN135 ASP136 LYS137 GLU138 GLY139 ASN140 GLY141 VAL142 LEU143 ILE144 CYS145 LYS146 LEU147 ARG148 LYS149 GLY150 GLN151 GLU152 LEU153 LYS154 LEU155 THR156 CYS157 VAL158 ALA159 LYS160 LYS161 GLY162 ILE163 ALA164 LYS165 GLU166 HIS167 ALA168 LYS169 TRP170 GLY171 PRO172 ALA173 ALA174 ALA175 ILE176 GLU177 PHE178 GLU179 TYR180 ASP181 PRO182 TRP183 ASN184 LYS185 LEU186 LYS187 HIS188 THR189 ASP190 TYR191 TRP192 TYR193 GLU194 GLN195 ASP196 SER197 ALA198 LYS199 GLU200 TRP201 PRO202 GLN203 SER204 LYS205 ASN206 CYS207 GLU208 TYR209 GLU210 ASP211 PRO212 PRO213 ASN214 GLU215 GLY216 ASP217 PRO218 PHE219 ASP220 TYR221 LYS222 ALA223 GLN224 ALA225 ASP226 THR227 PHE228 TYR229 MET230 ASN231 VAL232 GLU233 SER234 VAL235 GLY236 SER237 ILE238 PRO239 VAL240 ASP241 GLN242 VAL243 VAL244 VAL245 ARG246 GLY247 ILE248 ASP249 THR250 LEU251 GLN252 LYS253 LYS254 VAL255 ALA256 SER257 ILE258 LEU259 LEU260 ALA261 LEU262 THR263 GLN264 MET265 ASP266 GLN267 ASP268
Unit 4 ASP2 GLN3 GLU4 ASN5 GLU6 ARG7 ASN8 ILE9 SER10 ARG11 LEU12 TRP13 ARG14 ALA15 PHE16 ARG17 THR18 VAL19 LYS20 GLU21 MET22 VAL23 LYS24 ASP25 ARG26 GLY27 TYR28 PHE29 ILE30 THR31 GLN32 GLU33 GLU34 VAL35 GLU36 LEU37 PRO38 LEU39 GLU40 ASP41 PHE42 LYS43 ALA44 LYS45 TYR46 CYS47 ASP48 SER49 MET50 GLY51 ARG52 PRO53 GLN54 ARG55 LYS56 MET57 MET58 SER59 PHE60 GLN61 ALA62 ASN63 PRO64 THR65 GLU66 GLU67 SER68 ILE69 SER70 LYS71 PHE72 PRO73 ASP74 MET75 GLY76 SER77 LEU78 TRP79 VAL80 GLU81 PHE82 CYS83 ASP84 GLU85 PRO86 SER87 VAL88 GLY89 VAL90 LYS91 THR92 MET93 LYS94 THR95 PHE96 VAL97 ILE98 HIS99 ILE100 GLN101 GLU102 LYS103 ASN104 PHE105 GLN106 THR107 GLY108 ILE109 PHE110 VAL111 TYR112 GLN113 ASN114 ASN115 ILE116 THR117 PRO118 SER119 ALA120 MET121 LYS122 LEU123 VAL124 PRO125 SER126 ILE127 PRO128 PRO129 ALA130 THR131 ILE132 GLU133 THR134 PHE135 ASN136 GLU137 ALA138 ALA139 LEU140 VAL141 VAL142 ASN143 ILE144 THR145 HIS146 HIS147 GLU148 LEU149 VAL150 PRO151 LYS152 HIS153 ILE154 ARG155 LEU156 SER157 SER158 ASP159 GLU160 LYS161 ARG162 GLU163 LEU164 LEU165 LYS166 ARG167 TYR168 ARG169 LEU170 LYS171 GLU172 SER173 GLN174 LEU175 PRO176 ARG177 ILE178 GLN179 ARG180 ALA181 ASP182 PRO183 VAL184 ALA185 LEU186 TYR187 LEU188 GLY189 LEU190 LYS191 ARG192 GLY193 GLU194 VAL195 VAL196 LYS197 ILE198 ILE199 ARG200 LYS201 SER202 GLU203 THR204 SER205 GLY206 ARG207 TYR208 ALA209 SER210 TYR211 ARG212 ILE213 CYS214 MET215
Unit 5 LYS72 ALA73 ILE74 PRO75 LYS76 ASP77 GLN78 ARG79 ALA80 THR81 THR82 PRO83 TYR84 MET85 THR86 LYS87 TYR88 GLU89 ARG90 ALA91 ARG92 ILE93 LEU94 GLY95 THR96 ARG97 ALA98 LEU99 GLN100 ILE101 SER102 MET103 ASN104 ALA105 PRO106 VAL107 PHE108 VAL109 ASP110 LEU111 GLU112 GLY113 GLU114 THR115 ASP116 PRO117 LEU118 ARG119 ILE120 ALA121 MET122 LYS123 GLU124 LEU125 ALA126 GLU127 LYS128 LYS129 ILE130 PRO131 LEU132 VAL133 ILE134 ARG135 ARG136 TYR137 LEU138 PRO139 ASP140 GLY141 SER142 PHE143 GLU144 ASP145 TRP146 SER147 VAL148 GLU149 GLU150 LEU151 ILE152 VAL153 ASP154 LEU155
Unit 6 SER2 ASN3 THR4 LEU5 PHE6 ASP7 ASP8 ILE9 PHE10 GLN11 VAL12 SER13 GLU14 VAL15 ASP16 PRO17 GLY18 ARG19 TYR20 ASN21 LYS22 VAL23 CYS24 ARG25 ILE26 GLU27 ALA28 ALA29 SER30 THR31 THR32 GLN33 ASP34 GLN35 CYS36 LYS37 LEU38 THR39 LEU40 ASP41 ILE42 ASN43 VAL44 GLU45 LEU46 PHE47 PRO48 VAL49 ALA50 ALA51 GLN52 ASP53 SER54 LEU55 THR56 VAL57 THR58 ILE59 ALA60 SER61 SER62 LEU63 THR76 ARG77 SER78 TRP79 ARG80 PRO81 PRO82 GLN83 ALA84 GLY85 ASP86 ARG87 SER88 LEU89 ALA90 ASP91 ASP92 TYR93 ASP94 TYR95 VAL96 MET97 TYR98 GLY99 THR100 ALA101 TYR102 LYS103 PHE104 GLU105 GLU106 VAL107 SER108 LYS109 ASP110 LEU111 ILE112 ALA113 VAL114 TYR115 TYR116 SER117 PHE118 GLY119 GLY120 LEU121 LEU122 MET123 ARG124 LEU125 GLU126 GLY127 ASN128 TYR129 ARG130 ASN131 LEU132 ASN133 ASN134 LEU135 LYS136 GLN137 GLU138 ASN139 ALA140 TYR141 LEU142 LEU143 ILE144 ARG145 ARG146
Unit 7 THR2 THR3 PHE4 ARG5 PHE6 CYS7 ARG8 ASP9 CYS10 ASN11 ASN12 MET13 LEU14 TYR15 PRO16 ARG17 GLU18 ASP19 LYS20 GLU21 ASN22 ASN23 ARG24 LEU25 LEU26 PHE27 GLU28 CYS29 ARG30 THR31 CYS32 SER33 TYR34 VAL35 GLU36 GLU37 ALA38 GLY39 SER40 PRO41 LEU42 VAL43 TYR44 ARG45 HIS46 GLU47 LEU48 ILE49 THR50 ASN51 ILE52 GLY53 GLU54 THR55 ALA56 GLY57 VAL58 VAL59 GLN60 ASP61 ILE62 GLY63 SER64 ASP65 PRO66 THR67 LEU68 PRO69 ARG70 SER71 ASP72 ARG73 GLU74 CYS75 PRO76 LYS77 CYS78 HIS79 SER80 ARG81 GLU82 ASN83 VAL84 PHE85 PHE86 GLN87 SER88 GLN89 GLN90 ARG91 ARG92 LYS93 ASP94 THR95 SER96 MET97 VAL98 LEU99 PHE100 PHE101 VAL102 CYS103 LEU104 SER105 CYS106 SER107 HIS108 ILE109 PHE110 THR111 SER112 ASP113 GLN114 LYS115 ASN116 LYS117 ARG118 THR119 GLN120
Unit 8 MET1 ILE2 VAL3 PRO4 VAL5 ARG6 CYS7 PHE8 SER9 CYS10 GLY11 LYS12 VAL13 VAL14 GLY15 ASP16 LYS17 TRP18 GLU19 SER20 TYR21 LEU22 ASN23 LEU24 LEU25 GLN26 GLU27 ASP28 GLU29 LEU30 ASP31 GLU32 GLY33 THR34 ALA35 LEU36 SER37 ARG38 LEU39 GLY40 LEU41 LYS42 ARG43 TYR44 CYS45 CYS46 ARG47 ARG48 MET49 ILE50 LEU51 THR52 HIS53 VAL54 ASP55 LEU56 ILE57 GLU58 LYS59 PHE60 LEU61 ARG62 TYR63 ASN64 PRO65
Unit 9 MET1 ASN2 ALA3 PRO4 ASP5 ARG6 PHE7 GLU8 LEU9 PHE10 LEU11 LEU12 GLY13 GLU14 GLY15 GLU16 SER17 LYS18 LEU19 LYS20 ILE21 ASP22 PRO23 ASP24 THR25 LYS26 ALA27 PRO28 ASN29 ALA30 VAL31 VAL32 ILE33 THR34 PHE35 GLU36 LYS37 GLU38 ASP39 HIS40 THR41 LEU42 GLY43 ASN44 LEU45 ILE46 ARG47 ALA48 GLU49 LEU50 LEU51 ASN52 ASP53 ARG54 LYS55 VAL56 LEU57 PHE58 ALA59 ALA60 TYR61 LYS62 VAL63 GLU64 HIS65 PRO66 PHE67 PHE68 ALA69 ARG70 PHE71 LYS72 LEU73 ARG74 ILE75 GLN76 THR77 THR78 GLU79 GLY80 TYR81 ASP82 PRO83 LYS84 ASP85 ALA86 LEU87 LYS88 ASN89 ALA90 CYS91 ASN92 SER93 ILE94 ILE95 ASN96 LYS97 LEU98 GLY99 ALA100 LEU101 LYS102 THR103 ASN104 PHE105 GLU106 THR107 GLU108 TRP109 ASN110 LEU111 GLN112 THR113 LEU114 ALA115
Unit 10 ALA25 THR26 LEU27 LYS28 TYR29 ILE30 CYS31 ALA32 GLU33 CYS34 SER35 SER36 LYS37 LEU38 SER39 LEU40 SER41 ARG42 THR43 ASP44 ALA45 VAL46 ARG47 CYS48 LYS49 ASP50 CYS51 GLY52 HIS53 ARG54 ILE55 LEU56 LEU57 LYS58 ALA59 ARG60 THR61 LYS62 ARG63 LEU64 VAL65 GLN66 PHE67 GLU68 ALA69 ARG70
Nucleic acids
Unit 12 C5 C6 A7 G8 G9 A10
Unit 13 DT7 DC8 DA9 DA10 DG11 DT12 DA13 DC14 DT15 DT16 DT17 DT18 DT19 DC20 DC21 BRU22 DG23 DG24 DT25 DC26
Other macromolecules
Unit 11 DA2 DA3 DG4 DT5 DA6 DC7 DT8 DT9 DG10 DA11
Ligands
Unit 14 ZN2456 ZN2457 MG2458
Unit 15 ZN2225
Unit 16 ZN1269
Unit 17 ZN1121 ZN1122
Unit 18 ZN1066
Unit 19 ZN1071
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany