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Sequence, Chains, Asymmetric and Biological Units

Title RET RECOGNITION OF GDNF-GFRALPHA1 LIGAND BY A COMPOSITE BIND PROMOTES MEMBRANE-PROXIMAL SELF-ASSOCIATION
Keywords SIGNALING PROTEIN, VERTEBRATE DEVELOPMENT, HUMAN DISEASES, P THE RET-GFL- GFRA COMPLEX
Experiment ELECTRON MICROSCOPY
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4UX8     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein    A 448 3569 0
2  Protein    B 448 3569 0
3  Protein   GDNF FAMILY RECEPTOR ALPHA-1  C 284 2203 0
4  Protein   GLIAL CELL LINE-DERIVED NEUROTROPHIC FACTOR  D 93 720 0
5  Protein   GDNF FAMILY RECEPTOR ALPHA-1  E 284 2203 0
6  Protein   GLIAL CELL LINE-DERIVED NEUROTROPHIC FACTOR  F 93 720 0
7  Ligand    G 2 0 28
8  Ligand    H 2 0 28
9  Ligand    A 3 0 3
10  Ligand    B 3 0 3
total       1660 12984 62

Proteins
Unit 1 LEU29 TYR30 PHE31 SER32 ARG33 ASP34 ALA35 TYR36 TRP37 GLU38 LYS39 LEU40 TYR41 VAL42 ASP43 GLN44 ALA45 ALA46 GLY47 THR48 PRO49 LEU50 LEU51 TYR52 VAL53 HIS54 ALA55 LEU56 ARG57 ASP58 ALA59 PRO60 GLU61 GLU62 VAL63 PRO64 SER65 PHE66 ARG67 LEU68 GLY69 GLN70 HIS71 LEU72 TYR73 GLY74 THR75 TYR76 ARG77 THR78 ARG79 LEU80 HIS81 GLU82 ASN83 ASN84 TRP85 ILE86 ARG87 ILE88 GLN89 GLU90 ASP91 THR92 GLY93 LEU94 LEU95 TYR96 LEU97 GLN98 ARG99 SER100 LEU101 ASP102 HIS103 SER104 SER105 TRP106 GLU107 LYS108 LEU109 SER110 VAL111 ARG112 ASN113 ARG114 GLY115 PHE116 PRO117 LEU118 LEU119 THR120 VAL121 TYR122 LEU123 LYS124 VAL125 PHE126 LEU127 SER128 PRO129 CYS137 GLN138 TRP139 PRO140 GLY141 CYS142 ALA143 ARG144 VAL145 TYR146 PHE147 SER148 PHE149 PHE150 ASN151 THR152 SER153 PHE154 PRO155 ALA156 CYS157 SER158 SER159 LEU160 LYS161 PRO162 ARG163 GLU164 LEU165 CYS166 PHE167 PRO168 GLU169 THR170 ARG171 PRO172 SER173 PHE174 ARG175 ILE176 ARG177 GLU178 ASN179 ARG180 PRO181 PRO182 GLY183 THR184 PHE185 HIS186 GLN187 PHE188 ARG189 LEU190 LEU191 PRO192 VAL193 GLN194 PHE195 LEU196 CYS197 PRO198 GLN199 ILE200 SER201 VAL202 ALA203 TYR204 ARG205 LEU206 LEU207 GLU208 GLY209 GLU210 GLY211 LEU212 PRO213 PHE214 ARG215 SER216 ALA217 PRO218 ASP219 SER220 LEU221 GLU222 VAL223 SER224 THR225 ARG226 TRP227 ALA228 LEU229 ASP230 ARG231 GLU232 GLN233 ARG234 GLU235 LYS236 TYR237 GLU238 LEU239 VAL240 ALA241 VAL242 CYS243 THR244 VAL245 HIS246 ARG250 GLU251 GLU252 VAL253 VAL254 MET255 VAL256 PRO257 PHE258 PRO259 VAL260 THR261 VAL262 TYR263 ASP264 GLU265 ASP266 ASP267 SER268 ALA269 PRO270 THR271 PHE272 PRO273 ALA274 GLY275 VAL276 ASP277 THR278 ALA279 SER280 ALA281 VAL282 VAL283 GLU284 PHE285 LYS286 ARG287 LYS288 GLU289 ASP290 THR291 VAL292 VAL293 ALA294 THR295 LEU296 ARG297 VAL298 PHE299 ASP300 ALA301 ASP302 VAL303 VAL304 PRO305 ALA306 SER307 GLY308 GLU309 LEU310 VAL311 ARG312 ARG313 TYR314 THR315 SER316 THR317 LEU318 LEU319 PRO320 GLY321 ASP322 THR323 TRP324 ALA325 GLN326 GLN327 THR328 PHE329 ARG330 VAL331 GLU332 HIS333 TRP334 PRO335 ASN336 GLU337 THR338 SER339 VAL340 GLN341 ALA342 ASN343 GLY344 SER345 PHE346 VAL347 ARG348 ALA349 THR350 VAL351 HIS352 ASP353 TYR354 ARG355 LEU356 VAL357 LEU358 ASN359 ARG360 ASN361 LEU362 SER363 ILE364 SER365 GLU366 ASN367 ARG368 THR369 MET370 GLN371 LEU372 ALA373 VAL374 LEU375 VAL376 ASN377 ASP378 SER379 LEU402 HIS403 LEU404 PRO405 SER406 THR407 TYR408 SER409 LEU410 SER411 VAL412 SER413 ARG414 ARG415 ALA416 ARG417 ARG418 PHE419 ALA420 GLN421 ILE422 GLY423 LYS424 VAL425 CYS426 VAL427 GLU428 ASN429 CYS430 GLN431 ALA432 PHE433 SER434 GLY435 ILE436 ASN437 VAL438 GLN439 TYR440 LYS441 LEU442 HIS443 SER444 SER445 GLY446 ALA447 ASN448 CYS449 SER450 THR451 LEU452 GLY453 VAL454 VAL455 THR456 SER457 ALA458 GLU459 ASP460 THR461 SER462 GLY463 ILE464 LEU465 PHE466 VAL467 ASN468 ASP469 THR470 LYS471 ALA472 LEU473 ARG474 ARG475 PRO476 LYS477 CYS478 ALA479 GLU480 LEU481 HIS482 TYR483 MET484 VAL485 VAL486 ALA487 THR488 ASP489 GLN490 GLN491 THR492 SER493 ARG494 GLN495 ALA496 GLN497 ALA498 GLN499 LEU500 LEU501 VAL502 THR503 VAL504 GLU505 GLY506 SER507 TYR508
Unit 2 LEU29 TYR30 PHE31 SER32 ARG33 ASP34 ALA35 TYR36 TRP37 GLU38 LYS39 LEU40 TYR41 VAL42 ASP43 GLN44 ALA45 ALA46 GLY47 THR48 PRO49 LEU50 LEU51 TYR52 VAL53 HIS54 ALA55 LEU56 ARG57 ASP58 ALA59 PRO60 GLU61 GLU62 VAL63 PRO64 SER65 PHE66 ARG67 LEU68 GLY69 GLN70 HIS71 LEU72 TYR73 GLY74 THR75 TYR76 ARG77 THR78 ARG79 LEU80 HIS81 GLU82 ASN83 ASN84 TRP85 ILE86 ARG87 ILE88 GLN89 GLU90 ASP91 THR92 GLY93 LEU94 LEU95 TYR96 LEU97 GLN98 ARG99 SER100 LEU101 ASP102 HIS103 SER104 SER105 TRP106 GLU107 LYS108 LEU109 SER110 VAL111 ARG112 ASN113 ARG114 GLY115 PHE116 PRO117 LEU118 LEU119 THR120 VAL121 TYR122 LEU123 LYS124 VAL125 PHE126 LEU127 SER128 PRO129 CYS137 GLN138 TRP139 PRO140 GLY141 CYS142 ALA143 ARG144 VAL145 TYR146 PHE147 SER148 PHE149 PHE150 ASN151 THR152 SER153 PHE154 PRO155 ALA156 CYS157 SER158 SER159 LEU160 LYS161 PRO162 ARG163 GLU164 LEU165 CYS166 PHE167 PRO168 GLU169 THR170 ARG171 PRO172 SER173 PHE174 ARG175 ILE176 ARG177 GLU178 ASN179 ARG180 PRO181 PRO182 GLY183 THR184 PHE185 HIS186 GLN187 PHE188 ARG189 LEU190 LEU191 PRO192 VAL193 GLN194 PHE195 LEU196 CYS197 PRO198 GLN199 ILE200 SER201 VAL202 ALA203 TYR204 ARG205 LEU206 LEU207 GLU208 GLY209 GLU210 GLY211 LEU212 PRO213 PHE214 ARG215 SER216 ALA217 PRO218 ASP219 SER220 LEU221 GLU222 VAL223 SER224 THR225 ARG226 TRP227 ALA228 LEU229 ASP230 ARG231 GLU232 GLN233 ARG234 GLU235 LYS236 TYR237 GLU238 LEU239 VAL240 ALA241 VAL242 CYS243 THR244 VAL245 HIS246 ARG250 GLU251 GLU252 VAL253 VAL254 MET255 VAL256 PRO257 PHE258 PRO259 VAL260 THR261 VAL262 TYR263 ASP264 GLU265 ASP266 ASP267 SER268 ALA269 PRO270 THR271 PHE272 PRO273 ALA274 GLY275 VAL276 ASP277 THR278 ALA279 SER280 ALA281 VAL282 VAL283 GLU284 PHE285 LYS286 ARG287 LYS288 GLU289 ASP290 THR291 VAL292 VAL293 ALA294 THR295 LEU296 ARG297 VAL298 PHE299 ASP300 ALA301 ASP302 VAL303 VAL304 PRO305 ALA306 SER307 GLY308 GLU309 LEU310 VAL311 ARG312 ARG313 TYR314 THR315 SER316 THR317 LEU318 LEU319 PRO320 GLY321 ASP322 THR323 TRP324 ALA325 GLN326 GLN327 THR328 PHE329 ARG330 VAL331 GLU332 HIS333 TRP334 PRO335 ASN336 GLU337 THR338 SER339 VAL340 GLN341 ALA342 ASN343 GLY344 SER345 PHE346 VAL347 ARG348 ALA349 THR350 VAL351 HIS352 ASP353 TYR354 ARG355 LEU356 VAL357 LEU358 ASN359 ARG360 ASN361 LEU362 SER363 ILE364 SER365 GLU366 ASN367 ARG368 THR369 MET370 GLN371 LEU372 ALA373 VAL374 LEU375 VAL376 ASN377 ASP378 SER379 LEU402 HIS403 LEU404 PRO405 SER406 THR407 TYR408 SER409 LEU410 SER411 VAL412 SER413 ARG414 ARG415 ALA416 ARG417 ARG418 PHE419 ALA420 GLN421 ILE422 GLY423 LYS424 VAL425 CYS426 VAL427 GLU428 ASN429 CYS430 GLN431 ALA432 PHE433 SER434 GLY435 ILE436 ASN437 VAL438 GLN439 TYR440 LYS441 LEU442 HIS443 SER444 SER445 GLY446 ALA447 ASN448 CYS449 SER450 THR451 LEU452 GLY453 VAL454 VAL455 THR456 SER457 ALA458 GLU459 ASP460 THR461 SER462 GLY463 ILE464 LEU465 PHE466 VAL467 ASN468 ASP469 THR470 LYS471 ALA472 LEU473 ARG474 ARG475 PRO476 LYS477 CYS478 ALA479 GLU480 LEU481 HIS482 TYR483 MET484 VAL485 VAL486 ALA487 THR488 ASP489 GLN490 GLN491 THR492 SER493 ARG494 GLN495 ALA496 GLN497 ALA498 GLN499 LEU500 LEU501 VAL502 THR503 VAL504 GLU505 GLY506 SER507 TYR508
Unit 3 ASP6 ARG7 LEU8 ASP9 CYS10 VAL11 LYS12 ALA13 SER14 ASP15 GLN16 CYS17 LEU18 LYS19 GLU20 GLN21 SER22 CYS23 SER24 THR25 LYS26 TYR27 ARG28 THR29 LEU30 ARG31 GLN32 CYS33 VAL34 ALA35 GLY36 LYS37 GLU38 THR39 ASN40 PHE41 SER42 LEU43 THR44 SER45 GLY46 LEU47 GLU48 ALA49 LYS50 ASP51 GLU52 CYS53 ARG54 SER55 ALA56 MET57 GLU58 ALA59 LEU60 LYS61 GLN62 LYS63 SER64 LEU65 TYR66 ASN67 CYS68 ARG69 CYS70 LYS71 ARG72 GLY73 MET74 LYS75 LYS76 GLU77 LYS78 ASN79 CYS80 LEU81 ARG82 ILE83 TYR84 TRP85 SER86 MET87 TYR88 GLN89 SER90 LYS150 GLY151 ASN152 ASN153 CYS154 LEU155 ASP156 ALA157 ALA158 LYS159 ALA160 CYS161 ASN162 LEU163 ASP164 ASP165 THR166 CYS167 LYS168 LYS169 TYR170 ARG171 SER172 ALA173 TYR174 ILE175 THR176 PRO177 CYS178 THR179 THR180 SER181 MET182 SER183 ASN184 GLU185 VAL186 CYS187 ASN188 ARG189 ARG190 LYS191 CYS192 HIS193 LYS194 ALA195 LEU196 ARG197 GLN198 PHE199 PHE200 ASP201 LYS202 VAL203 PRO204 ALA205 LYS206 HIS207 SER208 TYR209 GLY210 MET211 LEU212 PHE213 CYS214 SER215 CYS216 ARG217 ASP218 ILE219 ALA220 CYS221 THR222 GLU223 ARG224 ARG225 ARG226 GLN227 THR228 ILE229 VAL230 PRO231 VAL232 CYS233 SER234 TYR235 GLU236 GLU237 ARG238 GLU239 ARG240 PRO241 ASN242 CYS243 LEU244 SER245 LEU246 GLN247 ASP248 SER249 CYS250 LYS251 THR252 ASN253 TYR254 ILE255 CYS256 ARG257 SER258 ARG259 LEU260 ALA261 ASP262 PHE263 PHE264 THR265 ASN266 CYS267 GLN268 PRO269 GLU270 SER271 ARG272 SER273 VAL274 SER275 ASN276 CYS277 LEU278 LYS279 GLU280 ASN281 TYR282 ALA283 ASP284 CYS285 LEU286 LEU287 ALA288 TYR289 SER290 GLY291 LEU292 ILE293 GLY294 THR295 VAL296 MET297 THR298 PRO299 ASN300 TYR301 VAL302 ASP303 SER304 SER305 SER306 LEU307 SER308 VAL309 ALA310 PRO311 TRP312 CYS313 ASP314 CYS315 SER316 ASN317 SER318 GLY319 ASN320 ASP321 LEU322 GLU323 ASP324 CYS325 LEU326 LYS327 PHE328 LEU329 ASN330 PHE331 PHE332 LYS333 ASP334 ASN335 THR336 CYS337 LEU338 LYS339 ASN340 ALA341 ILE342 GLN343 ALA344 PHE345 GLY346 ASN347 GLY348
Unit 4 VAL42 LEU43 THR44 ALA45 ILE46 HIS47 LEU48 ASN49 VAL50 THR51 ASP52 LEU53 GLY54 LEU55 GLY56 TYR57 GLU58 THR59 LYS60 GLU61 GLU62 LEU63 ILE64 PHE65 ARG66 TYR67 CYS68 SER69 GLY70 SER71 CYS72 ASP73 ALA74 ALA75 GLU76 THR77 THR78 TYR79 ASP80 LYS81 ILE82 LEU83 LYS84 ASN85 LEU86 SER87 ARG88 ASN89 ARG90 ARG91 LEU92 VAL93 SER94 ASP95 LYS96 VAL97 GLY98 GLN99 ALA100 CYS101 CYS102 ARG103 PRO104 ILE105 ALA106 PHE107 ASP108 ASP109 ASP110 LEU111 SER112 PHE113 LEU114 ASP115 ASP116 ASN117 LEU118 VAL119 TYR120 HIS121 ILE122 LEU123 ARG124 LYS125 HIS126 SER127 ALA128 LYS129 ARG130 CYS131 GLY132 CYS133 ILE134
Unit 5 ASP6 ARG7 LEU8 ASP9 CYS10 VAL11 LYS12 ALA13 SER14 ASP15 GLN16 CYS17 LEU18 LYS19 GLU20 GLN21 SER22 CYS23 SER24 THR25 LYS26 TYR27 ARG28 THR29 LEU30 ARG31 GLN32 CYS33 VAL34 ALA35 GLY36 LYS37 GLU38 THR39 ASN40 PHE41 SER42 LEU43 THR44 SER45 GLY46 LEU47 GLU48 ALA49 LYS50 ASP51 GLU52 CYS53 ARG54 SER55 ALA56 MET57 GLU58 ALA59 LEU60 LYS61 GLN62 LYS63 SER64 LEU65 TYR66 ASN67 CYS68 ARG69 CYS70 LYS71 ARG72 GLY73 MET74 LYS75 LYS76 GLU77 LYS78 ASN79 CYS80 LEU81 ARG82 ILE83 TYR84 TRP85 SER86 MET87 TYR88 GLN89 SER90 LYS150 GLY151 ASN152 ASN153 CYS154 LEU155 ASP156 ALA157 ALA158 LYS159 ALA160 CYS161 ASN162 LEU163 ASP164 ASP165 THR166 CYS167 LYS168 LYS169 TYR170 ARG171 SER172 ALA173 TYR174 ILE175 THR176 PRO177 CYS178 THR179 THR180 SER181 MET182 SER183 ASN184 GLU185 VAL186 CYS187 ASN188 ARG189 ARG190 LYS191 CYS192 HIS193 LYS194 ALA195 LEU196 ARG197 GLN198 PHE199 PHE200 ASP201 LYS202 VAL203 PRO204 ALA205 LYS206 HIS207 SER208 TYR209 GLY210 MET211 LEU212 PHE213 CYS214 SER215 CYS216 ARG217 ASP218 ILE219 ALA220 CYS221 THR222 GLU223 ARG224 ARG225 ARG226 GLN227 THR228 ILE229 VAL230 PRO231 VAL232 CYS233 SER234 TYR235 GLU236 GLU237 ARG238 GLU239 ARG240 PRO241 ASN242 CYS243 LEU244 SER245 LEU246 GLN247 ASP248 SER249 CYS250 LYS251 THR252 ASN253 TYR254 ILE255 CYS256 ARG257 SER258 ARG259 LEU260 ALA261 ASP262 PHE263 PHE264 THR265 ASN266 CYS267 GLN268 PRO269 GLU270 SER271 ARG272 SER273 VAL274 SER275 ASN276 CYS277 LEU278 LYS279 GLU280 ASN281 TYR282 ALA283 ASP284 CYS285 LEU286 LEU287 ALA288 TYR289 SER290 GLY291 LEU292 ILE293 GLY294 THR295 VAL296 MET297 THR298 PRO299 ASN300 TYR301 VAL302 ASP303 SER304 SER305 SER306 LEU307 SER308 VAL309 ALA310 PRO311 TRP312 CYS313 ASP314 CYS315 SER316 ASN317 SER318 GLY319 ASN320 ASP321 LEU322 GLU323 ASP324 CYS325 LEU326 LYS327 PHE328 LEU329 ASN330 PHE331 PHE332 LYS333 ASP334 ASN335 THR336 CYS337 LEU338 LYS339 ASN340 ALA341 ILE342 GLN343 ALA344 PHE345 GLY346 ASN347 GLY348
Unit 6 VAL42 LEU43 THR44 ALA45 ILE46 HIS47 LEU48 ASN49 VAL50 THR51 ASP52 LEU53 GLY54 LEU55 GLY56 TYR57 GLU58 THR59 LYS60 GLU61 GLU62 LEU63 ILE64 PHE65 ARG66 TYR67 CYS68 SER69 GLY70 SER71 CYS72 ASP73 ALA74 ALA75 GLU76 THR77 THR78 TYR79 ASP80 LYS81 ILE82 LEU83 LYS84 ASN85 LEU86 SER87 ARG88 ASN89 ARG90 ARG91 LEU92 VAL93 SER94 ASP95 LYS96 VAL97 GLY98 GLN99 ALA100 CYS101 CYS102 ARG103 PRO104 ILE105 ALA106 PHE107 ASP108 ASP109 ASP110 LEU111 SER112 PHE113 LEU114 ASP115 ASP116 ASN117 LEU118 VAL119 TYR120 HIS121 ILE122 LEU123 ARG124 LYS125 HIS126 SER127 ALA128 LYS129 ARG130 CYS131 GLY132 CYS133 ILE134

Ligands
Unit 7 NAG1 NAG2
Unit 8 NAG1 NAG2
Unit 9 CA1603 CA1604 CA1605
Unit 10 CA1603 CA1604 CA1605

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany