4U0Y - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAINS OF YVOA IN COMP PALINDROMIC OPERATOR DNA
• Keywords: TRANSCRIPTION, REPRESSOR, BACTERIAL TRANSCRIPTION REGULATION TRANSCRIPTION FACTOR, GNTR/HUTC FAMILY, WINGED HELIX-TURN-H MOTIF, N-ACETYLGLUCOSAMINE UTILIZATION, DNA-BINDING, OPERAT BINDING
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4U0Y	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	HTH-TYPE TRANSCRIPTIONAL REPRESSOR YVOA	A	75	607	0
2	Protein	HTH-TYPE TRANSCRIPTIONAL REPRESSOR YVOA	B	75	607	0
3	Protein	HTH-TYPE TRANSCRIPTIONAL REPRESSOR YVOA	C	75	607	0
4	Protein	HTH-TYPE TRANSCRIPTIONAL REPRESSOR YVOA	D	74	599	0
5	Other macromolecule	DNA (5'-D(P*GP*TP*GP*GP*TP*CP*TP*AP*GP*AP*CP*CP*A 3')	E	15	307	0
6	Other macromolecule	DNA (5'-D(P*GP*TP*GP*GP*TP*CP*TP*AP*GP*AP*CP*CP*A 3')	F	15	307	0
7	Ligand	HTH-TYPE TRANSCRIPTIONAL REPRESSOR YVOA	B	1	0	1
8	Ligand	HTH-TYPE TRANSCRIPTIONAL REPRESSOR YVOA	C	1	0	1
9	Water			287	0	287
total				618	3034	289

Proteins

Unit 1	MET 1 ASN 2 ILE 3 ASN 4 LYS 5 GLN 6 SER 7 PRO 8 ILE 9 PRO 10 ILE 11 TYR 12 TYR 13 GLN 14 ILE 15 MET 16 GLU 17 GLN 18 LEU 19 LYS 20 THR 21 GLN 22 ILE 23 LYS 24 ASN 25 GLY 26 GLU 27 LEU 28 GLN 29 PRO 30 ASP 31 MET 32 PRO 33 LEU 34 PRO 35 SER 36 GLU 37 ARG 38 GLU 39 TYR 40 ALA 41 GLU 42 GLN 43 PHE 44 GLY 45 ILE 46 SER 47 ARG 48 MET 49 THR 50 VAL 51 ARG 52 GLN 53 ALA 54 LEU 55 SER 56 ASN 57 LEU 58 VAL 59 ASN 60 GLU 61 GLY 62 LEU 63 LEU 64 TYR 65 ARG 66 LEU 67 LYS 68 GLY 69 ARG 70 GLY 71 THR 72 PHE 73 VAL 74 SER 75
Unit 2	MET 1 ASN 2 ILE 3 ASN 4 LYS 5 GLN 6 SER 7 PRO 8 ILE 9 PRO 10 ILE 11 TYR 12 TYR 13 GLN 14 ILE 15 MET 16 GLU 17 GLN 18 LEU 19 LYS 20 THR 21 GLN 22 ILE 23 LYS 24 ASN 25 GLY 26 GLU 27 LEU 28 GLN 29 PRO 30 ASP 31 MET 32 PRO 33 LEU 34 PRO 35 SER 36 GLU 37 ARG 38 GLU 39 TYR 40 ALA 41 GLU 42 GLN 43 PHE 44 GLY 45 ILE 46 SER 47 ARG 48 MET 49 THR 50 VAL 51 ARG 52 GLN 53 ALA 54 LEU 55 SER 56 ASN 57 LEU 58 VAL 59 ASN 60 GLU 61 GLY 62 LEU 63 LEU 64 TYR 65 ARG 66 LEU 67 LYS 68 GLY 69 ARG 70 GLY 71 THR 72 PHE 73 VAL 74 SER 75
Unit 3	MET 1 ASN 2 ILE 3 ASN 4 LYS 5 GLN 6 SER 7 PRO 8 ILE 9 PRO 10 ILE 11 TYR 12 TYR 13 GLN 14 ILE 15 MET 16 GLU 17 GLN 18 LEU 19 LYS 20 THR 21 GLN 22 ILE 23 LYS 24 ASN 25 GLY 26 GLU 27 LEU 28 GLN 29 PRO 30 ASP 31 MET 32 PRO 33 LEU 34 PRO 35 SER 36 GLU 37 ARG 38 GLU 39 TYR 40 ALA 41 GLU 42 GLN 43 PHE 44 GLY 45 ILE 46 SER 47 ARG 48 MET 49 THR 50 VAL 51 ARG 52 GLN 53 ALA 54 LEU 55 SER 56 ASN 57 LEU 58 VAL 59 ASN 60 GLU 61 GLY 62 LEU 63 LEU 64 TYR 65 ARG 66 LEU 67 LYS 68 GLY 69 ARG 70 GLY 71 THR 72 PHE 73 VAL 74 SER 75
Unit 4	ASN 2 ILE 3 ASN 4 LYS 5 GLN 6 SER 7 PRO 8 ILE 9 PRO 10 ILE 11 TYR 12 TYR 13 GLN 14 ILE 15 MET 16 GLU 17 GLN 18 LEU 19 LYS 20 THR 21 GLN 22 ILE 23 LYS 24 ASN 25 GLY 26 GLU 27 LEU 28 GLN 29 PRO 30 ASP 31 MET 32 PRO 33 LEU 34 PRO 35 SER 36 GLU 37 ARG 38 GLU 39 TYR 40 ALA 41 GLU 42 GLN 43 PHE 44 GLY 45 ILE 46 SER 47 ARG 48 MET 49 THR 50 VAL 51 ARG 52 GLN 53 ALA 54 LEU 55 SER 56 ASN 57 LEU 58 VAL 59 ASN 60 GLU 61 GLY 62 LEU 63 LEU 64 TYR 65 ARG 66 LEU 67 LYS 68 GLY 69 ARG 70 GLY 71 THR 72 PHE 73 VAL 74 SER 75

Other macromolecules

Unit 5	DG 1 DT 2 DG 3 DG 4 DT 5 DC 6 DT 7 DA 8 DG 9 DA 10 DC 11 DC 12 DA 13 DC 14 DT 15
Unit 6	DG 1 DT 2 DG 3 DG 4 DT 5 DC 6 DT 7 DA 8 DG 9 DA 10 DC 11 DC 12 DA 13 DC 14 DT 15

Ligands

Unit 7	CL 101
Unit 8	CL 101