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Title | CO-CRYSTALS OF THE TERNARY COMPLEX CONTAINING A T-BOX STEM I COGNATE TRNAGLY, AND B. SUBTILIS YBXF PROTEIN, TREATED BY R LITHIUM SULFATE AND REPLACING MG2+ WITH SR2+ POST CRYSTALLI | |
Keywords | RNA, RIBOSWITCH, TRNA, T-BOX, RIBOSOMAL PROTEIN-RNA COMPLEX | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 4TZW | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | RIBOSOME-ASSOCIATED PROTEIN L7AE-LIKE | A | 81 | 508 | 16 |
2 | RNA | B | 75 | 1592 | 0 | |
3 | RNA | C | 102 | 2197 | 0 | |
4 | Ligand | ENGINEERED TRNA | B | 15 | 0 | 15 |
5 | Ligand | T-BOX STEM I | C | 21 | 0 | 21 |
total | 294 | 4297 | 52 |
Unit 1 | SER2 TYR3 ASP4 LYS5 VAL6 SER7 GLN8 ALA9 LYS10 SER11 ILE12 ILE13 ILE14 GLY15 THR16 LYS17 GLN18 THR19 VAL20 LYS21 ALA22 LEU23 LYS24 ARG25 GLY26 SER27 VAL28 LYS29 GLU30 VAL31 VAL32 VAL33 ALA34 LYS35 ASP36 ALA37 ASP38 PRO39 ILE40 LEU41 THR42 SER43 SER44 VAL45 VAL46 SER47 LEU48 ALA49 GLU50 ASP51 GLN52 GLY53 ILE54 SER55 VAL56 SER57 MSE58 VAL59 GLU60 SER61 MSE62 LYS63 LYS64 LEU65 GLY66 LYS67 ALA68 CYS69 GLY70 ILE71 GLU72 VAL73 GLY74 ALA75 ALA76 ALA77 VAL78 ALA79 ILE80 ILE81 LEU82 |
Unit 2 | G5 A6 G7 U8 A9 G10 U11 U12 C13 A14 G15 U16 G17 G18 U19 A20 G21 A22 A23 C24 A25 C26 C27 A28 C29 C30 U31 U32 G33 C34 C35 A36 A37 G38 G39 U40 G41 G42 G43 G44 G45 U46 C47 G48 C49 G50 G51 G52 U53 U54 C55 G56 A57 A58 U59 C60 C61 C62 G63 U64 C65 U66 C67 G68 G69 G70 C71 G72 A73 A74 A75 G76 C77 C78 C79 |
Unit 3 | G1 G2 G3 U4 G5 C6 G7 A8 U9 G10 A11 G12 A13 A14 G15 A16 A17 G18 A19 G20 U21 A22 U23 U24 A25 A26 G27 G28 A29 U30 U31 U32 A33 C34 U35 A36 U37 G38 A39 U40 U41 A42 G43 C44 G45 A46 C47 U48 C49 U50 A51 G52 G53 A54 U55 A56 G57 U58 G59 A60 A61 A62 G63 C64 U65 A66 G67 A68 G69 G70 A71 U72 A73 G74 U75 A76 A77 C78 C79 U80 U81 A82 A83 G84 A85 A86 G87 G88 C89 A90 C91 U92 U93 C94 G95 A96 G97 C98 A99 C100 C101 C102 |
Unit 4 | SR101 SR102 SR103 SR104 SR105 SR106 SR107 SR108 SR109 SR110 SR111 SR112 SR113 SR114 SR115 |
Unit 5 | SR201 SR202 SR203 SR204 SR205 SR206 SR207 SR208 SR209 SR210 SR211 SR212 SR213 SR214 SR215 SR216 SR217 SR218 SR219 SR220 SR221 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |