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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE SPINACH RNA APTAMER IN COMPLEX WITH BARIUM IONS
Keywords APTAMER, FLUORESCENCE, G-QUADRUPLEX, RNA
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4TS0     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    X 44 912 23
2  RNA    Y 46 974 0
3  Ligand    A 2 0 23
4  Ligand    B 2 0 23
5  Ligand    C 2 0 23
6  Ligand    D 2 0 23
7  Ligand   SPINACH RNA APTAMER, BIMOLECULAR CONSTRUCT  X 8 0 8
8  Ligand   SPINACH RNA APTAMER, BIMOLECULAR CONSTRUCT  Y 5 0 44
9 Water     15 0 15
total       126 1886 182

Nucleic acids
Unit 1 G1 A2 C3 G4 C5 G6 A7 C8 C9 G10 A11 A12 U13 G14 A15 A16 A17 U18 G19 G20 U21 G22 A23 A24 G25 G26 A27 C28 G29 G30 G31 U32 C33 C34 A35 G36 C37 C38 G39 G40 C41 U42 G43 CCC44
Unit 2 G49 C50 A51 G52 C53 C54 G55 G56 C57 U58 U59 G60 U61 U62 G63 A64 G65 U66 A67 G68 A69 G70 U71 G72 U73 G74 A75 G76 C77 U78 C79 C80 G81 U82 A83 A84 C85 U86 G87 G88 U89 C90 G91 C92 G93 U94

Ligands
Unit 3 GLC1 FRU2
Unit 4 GLC1 FRU2
Unit 5 GLC1 FRU2
Unit 6 GLC1 FRU2
Unit 7 K102 K103 K104 K105 K106 BA108 K109 K110
Unit 8 CCC101 K104 K105 K106 38E107

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany