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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE BASIS OF CELLULAR DNTP REGULATION, SAMHD1-DGTP-DGT DGTP/DTTP COMPLEX
Keywords SAMHD1, HIV, RESTRICTION FACTOR, DNTPASE, DNTP REGULATION, H PATHOGEN INTERACTION, HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4TO2     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein    A 481 3933 0
2  Protein    B 481 3933 0
3  Protein    C 481 3933 0
4  Protein    D 481 3933 0
5  Ligand    A 6 0 96
6  Ligand    B 4 0 94
7  Ligand    C 6 0 94
8  Ligand    D 4 0 94
9 Water     233 0 233
total       2177 15732 611
Proteins
Unit 1 ASP113 THR114 MET115 LYS116 VAL117 ILE118 ASN119 ASP120 PRO121 ILE122 HIS123 GLY124 HIS125 ILE126 GLU127 LEU128 HIS129 PRO130 LEU131 LEU132 VAL133 ARG134 ILE135 ILE136 ASP137 THR138 PRO139 GLN140 PHE141 GLN142 ARG143 LEU144 ARG145 TYR146 ILE147 LYS148 GLN149 LEU150 GLY151 GLY152 GLY153 TYR154 TYR155 VAL156 PHE157 PRO158 GLY159 ALA160 SER161 HIS162 ASN163 ARG164 PHE165 GLU166 HIS167 SER168 LEU169 GLY170 VAL171 GLY172 TYR173 LEU174 ALA175 GLY176 CYS177 LEU178 VAL179 HIS180 ALA181 LEU182 GLY183 GLU184 LYS185 GLN186 PRO187 GLU188 LEU189 GLN190 ILE191 SER192 GLU193 ARG194 ASP195 VAL196 LEU197 CYS198 VAL199 GLN200 ILE201 ALA202 GLY203 LEU204 CYS205 ARG206 ASN207 LEU208 GLY209 HIS210 GLY211 PRO212 PHE213 SER214 HIS215 MET216 PHE217 ASP218 GLY219 ARG220 PHE221 ILE222 PRO223 LEU224 ALA225 ARG226 PRO227 GLU228 VAL229 LYS230 TRP231 THR232 HIS233 GLU234 GLN235 GLY236 SER237 VAL238 MET239 MET240 PHE241 GLU242 HIS243 LEU244 ILE245 ASN246 SER247 ASN248 GLY249 ILE250 LYS251 PRO252 VAL253 MET254 GLU255 GLN256 TYR257 GLY258 LEU259 ILE260 PRO261 GLU262 GLU263 ASP264 ILE265 CYS266 PHE267 ILE268 LYS269 GLU270 GLN271 ILE272 VAL273 GLY274 PRO275 LEU276 GLU277 LEU284 TRP285 PRO286 TYR287 LYS288 GLY289 ARG290 PRO291 GLU292 ASN293 LYS294 SER295 PHE296 LEU297 TYR298 GLU299 ILE300 VAL301 SER302 ASN303 LYS304 ARG305 ASN306 GLY307 ILE308 ASP309 VAL310 ASP311 LYS312 TRP313 ASP314 TYR315 PHE316 ALA317 ARG318 ASP319 CYS320 HIS321 HIS322 LEU323 GLY324 ILE325 GLN326 ASN327 ASN328 PHE329 ASP330 TYR331 LYS332 ARG333 PHE334 ILE335 LYS336 PHE337 ALA338 ARG339 VAL340 CYS341 GLU342 VAL343 ASP344 ASN345 GLU346 LEU347 ARG348 ILE349 CYS350 ALA351 ARG352 ASP353 LYS354 GLU355 VAL356 GLY357 ASN358 LEU359 TYR360 ASP361 MET362 PHE363 HIS364 THR365 ARG366 ASN367 SER368 LEU369 HIS370 ARG371 ARG372 ALA373 TYR374 GLN375 HIS376 LYS377 VAL378 GLY379 ASN380 ILE381 ILE382 ASP383 THR384 MET385 ILE386 THR387 ASP388 ALA389 PHE390 LEU391 LYS392 ALA393 ASP394 ASP395 TYR396 ILE397 GLU398 ILE399 THR400 GLY401 ALA402 GLY403 GLY404 LYS405 LYS406 TYR407 ARG408 ILE409 SER410 THR411 ALA412 ILE413 ASP414 ASP415 MET416 GLU417 ALA418 TYR419 THR420 LYS421 LEU422 THR423 ASP424 ASN425 ILE426 PHE427 LEU428 GLU429 ILE430 LEU431 TYR432 SER433 THR434 ASP435 PRO436 LYS437 LEU438 LYS439 ASP440 ALA441 ARG442 GLU443 ILE444 LEU445 LYS446 GLN447 ILE448 GLU449 TYR450 ARG451 ASN452 LEU453 PHE454 LYS455 TYR456 VAL457 GLY458 GLU459 THR460 GLN461 PRO462 THR463 GLY464 GLN465 ILE466 LYS467 ILE468 LYS469 ARG470 GLU471 ASP472 TYR473 GLU474 SER475 LEU476 PRO477 LYS478 GLU479 VAL480 ALA481 SER482 ALA483 LYS484 PRO485 LYS486 VAL487 LEU488 LEU489 ASP490 VAL491 LYS492 LEU493 LYS494 ALA495 GLU496 ASP497 PHE498 ILE499 VAL500 ASP501 VAL502 ILE503 ASN504 MET505 ASP506 TYR507 GLY508 MET509 GLN510 GLU511 LYS512 ASN513 PRO514 ILE515 ASP516 HIS517 VAL518 SER519 PHE520 TYR521 CYS522 LYS523 THR524 ALA525 PRO526 ASN527 ARG528 ALA529 ILE530 ARG531 ILE532 THR533 LYS534 ASN535 GLN536 VAL537 SER538 GLN539 LEU540 LEU541 PRO542 GLU543 LYS544 PHE545 ALA546 GLU547 GLN548 LEU549 ILE550 ARG551 VAL552 TYR553 CYS554 LYS555 LYS556 VAL557 ASP558 ARG559 LYS560 SER561 LEU562 TYR563 ALA564 ALA565 ARG566 GLN567 TYR568 PHE569 VAL570 GLN571 TRP572 CYS573 ALA574 ASP575 ARG576 ASN577 PHE578 THR579 LYS580 PRO581 GLN582 ASP583 GLY584 ASP585 VAL586 ILE587 ALA588 PRO589 LEU590 ILE591 THR592 PRO593 GLN594 LYS595 LYS596 GLU597 TRP598 ASN599
Unit 2 ASP113 THR114 MET115 LYS116 VAL117 ILE118 ASN119 ASP120 PRO121 ILE122 HIS123 GLY124 HIS125 ILE126 GLU127 LEU128 HIS129 PRO130 LEU131 LEU132 VAL133 ARG134 ILE135 ILE136 ASP137 THR138 PRO139 GLN140 PHE141 GLN142 ARG143 LEU144 ARG145 TYR146 ILE147 LYS148 GLN149 LEU150 GLY151 GLY152 GLY153 TYR154 TYR155 VAL156 PHE157 PRO158 GLY159 ALA160 SER161 HIS162 ASN163 ARG164 PHE165 GLU166 HIS167 SER168 LEU169 GLY170 VAL171 GLY172 TYR173 LEU174 ALA175 GLY176 CYS177 LEU178 VAL179 HIS180 ALA181 LEU182 GLY183 GLU184 LYS185 GLN186 PRO187 GLU188 LEU189 GLN190 ILE191 SER192 GLU193 ARG194 ASP195 VAL196 LEU197 CYS198 VAL199 GLN200 ILE201 ALA202 GLY203 LEU204 CYS205 ARG206 ASN207 LEU208 GLY209 HIS210 GLY211 PRO212 PHE213 SER214 HIS215 MET216 PHE217 ASP218 GLY219 ARG220 PHE221 ILE222 PRO223 LEU224 ALA225 ARG226 PRO227 GLU228 VAL229 LYS230 TRP231 THR232 HIS233 GLU234 GLN235 GLY236 SER237 VAL238 MET239 MET240 PHE241 GLU242 HIS243 LEU244 ILE245 ASN246 SER247 ASN248 GLY249 ILE250 LYS251 PRO252 VAL253 MET254 GLU255 GLN256 TYR257 GLY258 LEU259 ILE260 PRO261 GLU262 GLU263 ASP264 ILE265 CYS266 PHE267 ILE268 LYS269 GLU270 GLN271 ILE272 VAL273 GLY274 PRO275 LEU276 GLU277 LEU284 TRP285 PRO286 TYR287 LYS288 GLY289 ARG290 PRO291 GLU292 ASN293 LYS294 SER295 PHE296 LEU297 TYR298 GLU299 ILE300 VAL301 SER302 ASN303 LYS304 ARG305 ASN306 GLY307 ILE308 ASP309 VAL310 ASP311 LYS312 TRP313 ASP314 TYR315 PHE316 ALA317 ARG318 ASP319 CYS320 HIS321 HIS322 LEU323 GLY324 ILE325 GLN326 ASN327 ASN328 PHE329 ASP330 TYR331 LYS332 ARG333 PHE334 ILE335 LYS336 PHE337 ALA338 ARG339 VAL340 CYS341 GLU342 VAL343 ASP344 ASN345 GLU346 LEU347 ARG348 ILE349 CYS350 ALA351 ARG352 ASP353 LYS354 GLU355 VAL356 GLY357 ASN358 LEU359 TYR360 ASP361 MET362 PHE363 HIS364 THR365 ARG366 ASN367 SER368 LEU369 HIS370 ARG371 ARG372 ALA373 TYR374 GLN375 HIS376 LYS377 VAL378 GLY379 ASN380 ILE381 ILE382 ASP383 THR384 MET385 ILE386 THR387 ASP388 ALA389 PHE390 LEU391 LYS392 ALA393 ASP394 ASP395 TYR396 ILE397 GLU398 ILE399 THR400 GLY401 ALA402 GLY403 GLY404 LYS405 LYS406 TYR407 ARG408 ILE409 SER410 THR411 ALA412 ILE413 ASP414 ASP415 MET416 GLU417 ALA418 TYR419 THR420 LYS421 LEU422 THR423 ASP424 ASN425 ILE426 PHE427 LEU428 GLU429 ILE430 LEU431 TYR432 SER433 THR434 ASP435 PRO436 LYS437 LEU438 LYS439 ASP440 ALA441 ARG442 GLU443 ILE444 LEU445 LYS446 GLN447 ILE448 GLU449 TYR450 ARG451 ASN452 LEU453 PHE454 LYS455 TYR456 VAL457 GLY458 GLU459 THR460 GLN461 PRO462 THR463 GLY464 GLN465 ILE466 LYS467 ILE468 LYS469 ARG470 GLU471 ASP472 TYR473 GLU474 SER475 LEU476 PRO477 LYS478 GLU479 VAL480 ALA481 SER482 ALA483 LYS484 PRO485 LYS486 VAL487 LEU488 LEU489 ASP490 VAL491 LYS492 LEU493 LYS494 ALA495 GLU496 ASP497 PHE498 ILE499 VAL500 ASP501 VAL502 ILE503 ASN504 MET505 ASP506 TYR507 GLY508 MET509 GLN510 GLU511 LYS512 ASN513 PRO514 ILE515 ASP516 HIS517 VAL518 SER519 PHE520 TYR521 CYS522 LYS523 THR524 ALA525 PRO526 ASN527 ARG528 ALA529 ILE530 ARG531 ILE532 THR533 LYS534 ASN535 GLN536 VAL537 SER538 GLN539 LEU540 LEU541 PRO542 GLU543 LYS544 PHE545 ALA546 GLU547 GLN548 LEU549 ILE550 ARG551 VAL552 TYR553 CYS554 LYS555 LYS556 VAL557 ASP558 ARG559 LYS560 SER561 LEU562 TYR563 ALA564 ALA565 ARG566 GLN567 TYR568 PHE569 VAL570 GLN571 TRP572 CYS573 ALA574 ASP575 ARG576 ASN577 PHE578 THR579 LYS580 PRO581 GLN582 ASP583 GLY584 ASP585 VAL586 ILE587 ALA588 PRO589 LEU590 ILE591 THR592 PRO593 GLN594 LYS595 LYS596 GLU597 TRP598 ASN599
Unit 3 ASP113 THR114 MET115 LYS116 VAL117 ILE118 ASN119 ASP120 PRO121 ILE122 HIS123 GLY124 HIS125 ILE126 GLU127 LEU128 HIS129 PRO130 LEU131 LEU132 VAL133 ARG134 ILE135 ILE136 ASP137 THR138 PRO139 GLN140 PHE141 GLN142 ARG143 LEU144 ARG145 TYR146 ILE147 LYS148 GLN149 LEU150 GLY151 GLY152 GLY153 TYR154 TYR155 VAL156 PHE157 PRO158 GLY159 ALA160 SER161 HIS162 ASN163 ARG164 PHE165 GLU166 HIS167 SER168 LEU169 GLY170 VAL171 GLY172 TYR173 LEU174 ALA175 GLY176 CYS177 LEU178 VAL179 HIS180 ALA181 LEU182 GLY183 GLU184 LYS185 GLN186 PRO187 GLU188 LEU189 GLN190 ILE191 SER192 GLU193 ARG194 ASP195 VAL196 LEU197 CYS198 VAL199 GLN200 ILE201 ALA202 GLY203 LEU204 CYS205 ARG206 ASN207 LEU208 GLY209 HIS210 GLY211 PRO212 PHE213 SER214 HIS215 MET216 PHE217 ASP218 GLY219 ARG220 PHE221 ILE222 PRO223 LEU224 ALA225 ARG226 PRO227 GLU228 VAL229 LYS230 TRP231 THR232 HIS233 GLU234 GLN235 GLY236 SER237 VAL238 MET239 MET240 PHE241 GLU242 HIS243 LEU244 ILE245 ASN246 SER247 ASN248 GLY249 ILE250 LYS251 PRO252 VAL253 MET254 GLU255 GLN256 TYR257 GLY258 LEU259 ILE260 PRO261 GLU262 GLU263 ASP264 ILE265 CYS266 PHE267 ILE268 LYS269 GLU270 GLN271 ILE272 VAL273 GLY274 PRO275 LEU276 GLU277 LEU284 TRP285 PRO286 TYR287 LYS288 GLY289 ARG290 PRO291 GLU292 ASN293 LYS294 SER295 PHE296 LEU297 TYR298 GLU299 ILE300 VAL301 SER302 ASN303 LYS304 ARG305 ASN306 GLY307 ILE308 ASP309 VAL310 ASP311 LYS312 TRP313 ASP314 TYR315 PHE316 ALA317 ARG318 ASP319 CYS320 HIS321 HIS322 LEU323 GLY324 ILE325 GLN326 ASN327 ASN328 PHE329 ASP330 TYR331 LYS332 ARG333 PHE334 ILE335 LYS336 PHE337 ALA338 ARG339 VAL340 CYS341 GLU342 VAL343 ASP344 ASN345 GLU346 LEU347 ARG348 ILE349 CYS350 ALA351 ARG352 ASP353 LYS354 GLU355 VAL356 GLY357 ASN358 LEU359 TYR360 ASP361 MET362 PHE363 HIS364 THR365 ARG366 ASN367 SER368 LEU369 HIS370 ARG371 ARG372 ALA373 TYR374 GLN375 HIS376 LYS377 VAL378 GLY379 ASN380 ILE381 ILE382 ASP383 THR384 MET385 ILE386 THR387 ASP388 ALA389 PHE390 LEU391 LYS392 ALA393 ASP394 ASP395 TYR396 ILE397 GLU398 ILE399 THR400 GLY401 ALA402 GLY403 GLY404 LYS405 LYS406 TYR407 ARG408 ILE409 SER410 THR411 ALA412 ILE413 ASP414 ASP415 MET416 GLU417 ALA418 TYR419 THR420 LYS421 LEU422 THR423 ASP424 ASN425 ILE426 PHE427 LEU428 GLU429 ILE430 LEU431 TYR432 SER433 THR434 ASP435 PRO436 LYS437 LEU438 LYS439 ASP440 ALA441 ARG442 GLU443 ILE444 LEU445 LYS446 GLN447 ILE448 GLU449 TYR450 ARG451 ASN452 LEU453 PHE454 LYS455 TYR456 VAL457 GLY458 GLU459 THR460 GLN461 PRO462 THR463 GLY464 GLN465 ILE466 LYS467 ILE468 LYS469 ARG470 GLU471 ASP472 TYR473 GLU474 SER475 LEU476 PRO477 LYS478 GLU479 VAL480 ALA481 SER482 ALA483 LYS484 PRO485 LYS486 VAL487 LEU488 LEU489 ASP490 VAL491 LYS492 LEU493 LYS494 ALA495 GLU496 ASP497 PHE498 ILE499 VAL500 ASP501 VAL502 ILE503 ASN504 MET505 ASP506 TYR507 GLY508 MET509 GLN510 GLU511 LYS512 ASN513 PRO514 ILE515 ASP516 HIS517 VAL518 SER519 PHE520 TYR521 CYS522 LYS523 THR524 ALA525 PRO526 ASN527 ARG528 ALA529 ILE530 ARG531 ILE532 THR533 LYS534 ASN535 GLN536 VAL537 SER538 GLN539 LEU540 LEU541 PRO542 GLU543 LYS544 PHE545 ALA546 GLU547 GLN548 LEU549 ILE550 ARG551 VAL552 TYR553 CYS554 LYS555 LYS556 VAL557 ASP558 ARG559 LYS560 SER561 LEU562 TYR563 ALA564 ALA565 ARG566 GLN567 TYR568 PHE569 VAL570 GLN571 TRP572 CYS573 ALA574 ASP575 ARG576 ASN577 PHE578 THR579 LYS580 PRO581 GLN582 ASP583 GLY584 ASP585 VAL586 ILE587 ALA588 PRO589 LEU590 ILE591 THR592 PRO593 GLN594 LYS595 LYS596 GLU597 TRP598 ASN599
Unit 4 ASP113 THR114 MET115 LYS116 VAL117 ILE118 ASN119 ASP120 PRO121 ILE122 HIS123 GLY124 HIS125 ILE126 GLU127 LEU128 HIS129 PRO130 LEU131 LEU132 VAL133 ARG134 ILE135 ILE136 ASP137 THR138 PRO139 GLN140 PHE141 GLN142 ARG143 LEU144 ARG145 TYR146 ILE147 LYS148 GLN149 LEU150 GLY151 GLY152 GLY153 TYR154 TYR155 VAL156 PHE157 PRO158 GLY159 ALA160 SER161 HIS162 ASN163 ARG164 PHE165 GLU166 HIS167 SER168 LEU169 GLY170 VAL171 GLY172 TYR173 LEU174 ALA175 GLY176 CYS177 LEU178 VAL179 HIS180 ALA181 LEU182 GLY183 GLU184 LYS185 GLN186 PRO187 GLU188 LEU189 GLN190 ILE191 SER192 GLU193 ARG194 ASP195 VAL196 LEU197 CYS198 VAL199 GLN200 ILE201 ALA202 GLY203 LEU204 CYS205 ARG206 ASN207 LEU208 GLY209 HIS210 GLY211 PRO212 PHE213 SER214 HIS215 MET216 PHE217 ASP218 GLY219 ARG220 PHE221 ILE222 PRO223 LEU224 ALA225 ARG226 PRO227 GLU228 VAL229 LYS230 TRP231 THR232 HIS233 GLU234 GLN235 GLY236 SER237 VAL238 MET239 MET240 PHE241 GLU242 HIS243 LEU244 ILE245 ASN246 SER247 ASN248 GLY249 ILE250 LYS251 PRO252 VAL253 MET254 GLU255 GLN256 TYR257 GLY258 LEU259 ILE260 PRO261 GLU262 GLU263 ASP264 ILE265 CYS266 PHE267 ILE268 LYS269 GLU270 GLN271 ILE272 VAL273 GLY274 PRO275 LEU276 GLU277 LEU284 TRP285 PRO286 TYR287 LYS288 GLY289 ARG290 PRO291 GLU292 ASN293 LYS294 SER295 PHE296 LEU297 TYR298 GLU299 ILE300 VAL301 SER302 ASN303 LYS304 ARG305 ASN306 GLY307 ILE308 ASP309 VAL310 ASP311 LYS312 TRP313 ASP314 TYR315 PHE316 ALA317 ARG318 ASP319 CYS320 HIS321 HIS322 LEU323 GLY324 ILE325 GLN326 ASN327 ASN328 PHE329 ASP330 TYR331 LYS332 ARG333 PHE334 ILE335 LYS336 PHE337 ALA338 ARG339 VAL340 CYS341 GLU342 VAL343 ASP344 ASN345 GLU346 LEU347 ARG348 ILE349 CYS350 ALA351 ARG352 ASP353 LYS354 GLU355 VAL356 GLY357 ASN358 LEU359 TYR360 ASP361 MET362 PHE363 HIS364 THR365 ARG366 ASN367 SER368 LEU369 HIS370 ARG371 ARG372 ALA373 TYR374 GLN375 HIS376 LYS377 VAL378 GLY379 ASN380 ILE381 ILE382 ASP383 THR384 MET385 ILE386 THR387 ASP388 ALA389 PHE390 LEU391 LYS392 ALA393 ASP394 ASP395 TYR396 ILE397 GLU398 ILE399 THR400 GLY401 ALA402 GLY403 GLY404 LYS405 LYS406 TYR407 ARG408 ILE409 SER410 THR411 ALA412 ILE413 ASP414 ASP415 MET416 GLU417 ALA418 TYR419 THR420 LYS421 LEU422 THR423 ASP424 ASN425 ILE426 PHE427 LEU428 GLU429 ILE430 LEU431 TYR432 SER433 THR434 ASP435 PRO436 LYS437 LEU438 LYS439 ASP440 ALA441 ARG442 GLU443 ILE444 LEU445 LYS446 GLN447 ILE448 GLU449 TYR450 ARG451 ASN452 LEU453 PHE454 LYS455 TYR456 VAL457 GLY458 GLU459 THR460 GLN461 PRO462 THR463 GLY464 GLN465 ILE466 LYS467 ILE468 LYS469 ARG470 GLU471 ASP472 TYR473 GLU474 SER475 LEU476 PRO477 LYS478 GLU479 VAL480 ALA481 SER482 ALA483 LYS484 PRO485 LYS486 VAL487 LEU488 LEU489 ASP490 VAL491 LYS492 LEU493 LYS494 ALA495 GLU496 ASP497 PHE498 ILE499 VAL500 ASP501 VAL502 ILE503 ASN504 MET505 ASP506 TYR507 GLY508 MET509 GLN510 GLU511 LYS512 ASN513 PRO514 ILE515 ASP516 HIS517 VAL518 SER519 PHE520 TYR521 CYS522 LYS523 THR524 ALA525 PRO526 ASN527 ARG528 ALA529 ILE530 ARG531 ILE532 THR533 LYS534 ASN535 GLN536 VAL537 SER538 GLN539 LEU540 LEU541 PRO542 GLU543 LYS544 PHE545 ALA546 GLU547 GLN548 LEU549 ILE550 ARG551 VAL552 TYR553 CYS554 LYS555 LYS556 VAL557 ASP558 ARG559 LYS560 SER561 LEU562 TYR563 ALA564 ALA565 ARG566 GLN567 TYR568 PHE569 VAL570 GLN571 TRP572 CYS573 ALA574 ASP575 ARG576 ASN577 PHE578 THR579 LYS580 PRO581 GLN582 ASP583 GLY584 ASP585 VAL586 ILE587 ALA588 PRO589 LEU590 ILE591 THR592 PRO593 GLN594 LYS595 LYS596 GLU597 TRP598 ASN599
Ligands
Unit 5 DGT701 MG702 DGT703 DGT704 MG705 MG706
Unit 6 DGT701 MG702 DGT703 DGT704
Unit 7 DGT701 MG702 MG703 TTP704 MG705 DGT706
Unit 8 DGT701 DGT702 MG703 DGT704
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany