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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF E. COLI RPPH BOUND TO RNA AND TWO MAGNESIUM ION
Keywords NUDIX HYDROLASE, RNA PYROPHOSPHOHYDROLASE, HYDROLASE-RNA COM
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

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Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RNA PYROPHOSPHOHYDROLASE  A 158 1261 0
2  DNA/RNA    B 3 27 27
3  Ligand   RNA PYROPHOSPHOHYDROLASE  A 4 0 12
4 Water     109 0 109
total       274 1288 148

Proteins
Unit 1 SER1 MET2 ILE3 ASP4 ASP5 ASP6 GLY7 TYR8 ARG9 PRO10 ASN11 VAL12 GLY13 ILE14 VAL15 ILE16 CYS17 ASN18 ARG19 GLN20 GLY21 GLN22 VAL23 MET24 TRP25 ALA26 ARG27 ARG28 PHE29 GLY30 GLN31 HIS32 SER33 TRP34 GLN35 PHE36 PRO37 GLN38 GLY39 GLY40 ILE41 ASN42 PRO43 GLY44 GLU45 SER46 ALA47 GLU48 GLN49 ALA50 MET51 TYR52 ARG53 GLU54 LEU55 PHE56 GLU57 GLU58 VAL59 GLY60 LEU61 SER62 ARG63 LYS64 ASP65 VAL66 ARG67 ILE68 LEU69 ALA70 SER71 THR72 ARG73 ASN74 TRP75 LEU76 ARG77 TYR78 LYS79 LEU80 PRO81 LYS82 ARG83 LEU84 VAL85 ARG86 LYS90 PRO91 VAL92 CYS93 ILE94 GLY95 GLN96 LYS97 GLN98 LYS99 TRP100 PHE101 LEU102 LEU103 GLN104 LEU105 VAL106 SER107 GLY108 ASP109 ALA110 GLU111 ILE112 ASN113 MET114 GLN115 THR116 SER117 SER118 THR119 PRO120 GLU121 PHE122 ASP123 GLY124 TRP125 ARG126 TRP127 VAL128 SER129 TYR130 TRP131 TYR132 PRO133 VAL134 ARG135 GLN136 VAL137 VAL138 SER139 PHE140 LYS141 ARG142 ASP143 VAL144 TYR145 ARG146 ARG147 VAL148 MET149 LYS150 GLU151 PHE152 ALA153 SER154 VAL155 VAL156 MET157 SER158 LEU159 ALA160 ALA161

Nucleic acids
Unit 2 APC1 G2 U3

Ligands
Unit 3 MG201 MG202 SO4203 SO4204

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany