4RNY - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF HELICOBACTER PYLORI CSD3 FROM THE ORTHORHOMBIC
• Keywords: M23B METALLOPEPTIDASE, METALLOPEPTIDASE, PEPTIDOGLYCAN, HYDR
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4RNY	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	CONSERVED HYPOTHETICAL SECRETED PROTEIN	A	359	2911	0
2	Protein	CONSERVED HYPOTHETICAL SECRETED PROTEIN	B	359	2911	0
3	Ligand	CONSERVED HYPOTHETICAL SECRETED PROTEIN	A	9	0	45
4	Ligand	CONSERVED HYPOTHETICAL SECRETED PROTEIN	B	7	0	32
5	Water			225	0	225
total				959	5822	302

Proteins

Unit 1

MET 41 GLU 42 ARG 43 LEU 44 VAL 45 TRP 46 ASP 47 LYS 48 LEU 49 THR 50 LEU 51 LEU 52 GLY 53 PHE 54 LEU 55 GLU 56 LYS 57 ASN 58 HIS 59 ILE 60 PRO 61 GLN 62 LYS 63 LEU 64 TYR 65 TYR 66 ASN 67 LEU 68 SER 69 SER 70 GLN 71 ASP 72 LYS 73 GLU 74 LEU 75 SER 76 ALA 77 GLU 78 ILE 79 GLN 80 SER 81 ASN 82 VAL 83 THR 84 TYR 85 TYR 86 THR 87 LEU 88 ARG 89 ASP 90 ALA 91 ASN 92 ASN 93 THR 94 LEU 95 ILE 96 GLN 97 ALA 98 LEU 99 ILE 100 PRO 101 ILE 102 SER 103 GLN 104 ASP 105 LEU 106 GLN 107 ILE 108 HIS 109 ILE 110 TYR 111 LYS 112 LYS 113 GLY 114 GLU 115 ASP 116 TYR 117 PHE 118 LEU 119 ASP 120 PHE 121 ILE 122 PRO 123 ILE 124 ILE 125 PHE 126 THR 127 ARG 128 LYS 129 GLU 130 LYS 131 THR 132 LEU 133 LEU 134 LEU 135 SER 136 LEU 137 GLN 138 THR 139 SER 140 PRO 141 TYR 142 GLN 143 ASP 144 ILE 145 ILE 146 LYS 147 ALA 148 THR 149 ASN 150 ASP 151 PRO 152 LEU 153 LEU 154 ALA 155 ASN 156 GLN 157 LEU 158 MET 159 ASN 160 ALA 161 TYR 162 LYS 163 LYS 164 SER 165 VAL 166 PRO 167 PHE 168 LYS 169 ARG 170 LEU 171 VAL 172 LYS 173 ASN 174 ASP 175 LYS 176 ILE 177 ALA 178 ILE 179 VAL 180 TYR 181 THR 182 ARG 183 ASP 184 TYR 185 ARG 186 VAL 187 GLY 188 GLN 189 ALA 190 PHE 191 GLY 192 GLN 193 PRO 194 THR 195 ILE 196 LYS 197 MET 198 ALA 199 MET 200 VAL 201 SER 202 SER 203 ARG 204 SER 205 ASN 206 GLN 207 TYR 208 TYR 209 LEU 210 PHE 211 SER 212 HIS 213 SER 214 ASN 215 GLY 216 HIS 217 TYR 218 TYR 219 ASP 220 SER 221 LYS 222 ALA 223 GLN 224 GLU 225 VAL 226 ALA 227 GLY 228 PHE 229 LEU 230 LEU 231 GLU 232 THR 233 PRO 234 VAL 235 LYS 236 TYR 237 THR 238 ARG 239 ILE 240 SER 241 SER 242 PRO 243 PHE 244 SER 245 TYR 246 GLY 247 ARG 248 PHE 249 HIS 250 PRO 251 VAL 252 LEU 253 LYS 254 VAL 255 ARG 256 ARG 257 PRO 258 HIS 259 TYR 260 GLY 261 VAL 262 ASP 263 TYR 264 ALA 265 ALA 266 LYS 267 HIS 268 GLY 269 SER 270 LEU 271 ILE 272 HIS 273 SER 274 ALA 275 SER 276 ASP 277 GLY 278 ARG 279 VAL 280 GLY 281 PHE 282 MET 283 GLY 284 VAL 285 LYS 286 ALA 287 GLY 288 TYR 289 GLY 290 LYS 291 VAL 292 VAL 293 GLU 294 ILE 295 HIS 296 LEU 297 ASN 298 GLU 299 LEU 300 ARG 301 LEU 302 VAL 303 TYR 304 ALA 305 HIS 306 MET 307 SER 308 ALA 309 PHE 310 ALA 311 ASN 312 GLY 313 LEU 314 LYS 315 LYS 316 GLY 317 SER 318 PHE 319 VAL 320 LYS 321 LYS 322 GLY 323 GLN 324 ILE 325 ILE 326 GLY 327 ARG 328 VAL 329 GLY 330 SER 331 THR 332 GLY 337 PRO 338 HIS 339 LEU 340 HIS 341 PHE 342 GLY 343 VAL 344 TYR 345 LYS 346 ASN 347 SER 348 ARG 349 PRO 350 ILE 351 ASN 352 PRO 353 LEU 354 GLY 355 TYR 356 ILE 357 ARG 358 THR 359 ALA 360 LYS 361 SER 362 LYS 363 LEU 364 HIS 365 GLY 366 LYS 367 GLN 368 ARG 369 GLU 370 VAL 371 PHE 372 LEU 373 GLU 374 LYS 375 ALA 376 GLN 377 ARG 378 SER 379 LYS 380 GLN 381 LYS 382 LEU 383 GLU 384 GLU 385 LEU 386 LEU 387 LYS 388 THR 389 HIS 390 SER 391 PHE 392 GLU 393 LYS 394 ASN 395 SER 396 PHE 397 TYR 398 LEU 399 LEU 400 GLU 401 GLY 402 PHE 403

Unit 2

MET 41 GLU 42 ARG 43 LEU 44 VAL 45 TRP 46 ASP 47 LYS 48 LEU 49 THR 50 LEU 51 LEU 52 GLY 53 PHE 54 LEU 55 GLU 56 LYS 57 ASN 58 HIS 59 ILE 60 PRO 61 GLN 62 LYS 63 LEU 64 TYR 65 TYR 66 ASN 67 LEU 68 SER 69 SER 70 GLN 71 ASP 72 LYS 73 GLU 74 LEU 75 SER 76 ALA 77 GLU 78 ILE 79 GLN 80 SER 81 ASN 82 VAL 83 THR 84 TYR 85 TYR 86 THR 87 LEU 88 ARG 89 ASP 90 ALA 91 ASN 92 ASN 93 THR 94 LEU 95 ILE 96 GLN 97 ALA 98 LEU 99 ILE 100 PRO 101 ILE 102 SER 103 GLN 104 ASP 105 LEU 106 GLN 107 ILE 108 HIS 109 ILE 110 TYR 111 LYS 112 LYS 113 GLY 114 GLU 115 ASP 116 TYR 117 PHE 118 LEU 119 ASP 120 PHE 121 ILE 122 PRO 123 ILE 124 ILE 125 PHE 126 THR 127 ARG 128 LYS 129 GLU 130 LYS 131 THR 132 LEU 133 LEU 134 LEU 135 SER 136 LEU 137 GLN 138 THR 139 SER 140 PRO 141 TYR 142 GLN 143 ASP 144 ILE 145 ILE 146 LYS 147 ALA 148 THR 149 ASN 150 ASP 151 PRO 152 LEU 153 LEU 154 ALA 155 ASN 156 GLN 157 LEU 158 MET 159 ASN 160 ALA 161 TYR 162 LYS 163 LYS 164 SER 165 VAL 166 PRO 167 PHE 168 LYS 169 ARG 170 LEU 171 VAL 172 LYS 173 ASN 174 ASP 175 LYS 176 ILE 177 ALA 178 ILE 179 VAL 180 TYR 181 THR 182 ARG 183 ASP 184 TYR 185 ARG 186 VAL 187 GLY 188 GLN 189 ALA 190 PHE 191 GLY 192 GLN 193 PRO 194 THR 195 ILE 196 LYS 197 MET 198 ALA 199 MET 200 VAL 201 SER 202 SER 203 ARG 204 SER 205 ASN 206 GLN 207 TYR 208 TYR 209 LEU 210 PHE 211 SER 212 HIS 213 SER 214 ASN 215 GLY 216 HIS 217 TYR 218 TYR 219 ASP 220 SER 221 LYS 222 ALA 223 GLN 224 GLU 225 VAL 226 ALA 227 GLY 228 PHE 229 LEU 230 LEU 231 GLU 232 THR 233 PRO 234 VAL 235 LYS 236 TYR 237 THR 238 ARG 239 ILE 240 SER 241 SER 242 PRO 243 PHE 244 SER 245 TYR 246 GLY 247 ARG 248 PHE 249 HIS 250 PRO 251 VAL 252 LEU 253 LYS 254 VAL 255 ARG 256 ARG 257 PRO 258 HIS 259 TYR 260 GLY 261 VAL 262 ASP 263 TYR 264 ALA 265 ALA 266 LYS 267 HIS 268 GLY 269 SER 270 LEU 271 ILE 272 HIS 273 SER 274 ALA 275 SER 276 ASP 277 GLY 278 ARG 279 VAL 280 GLY 281 PHE 282 MET 283 GLY 284 VAL 285 LYS 286 ALA 287 GLY 288 TYR 289 GLY 290 LYS 291 VAL 292 VAL 293 GLU 294 ILE 295 HIS 296 LEU 297 ASN 298 GLU 299 LEU 300 ARG 301 LEU 302 VAL 303 TYR 304 ALA 305 HIS 306 MET 307 SER 308 ALA 309 PHE 310 ALA 311 ASN 312 GLY 313 LEU 314 LYS 315 LYS 316 GLY 317 SER 318 PHE 319 VAL 320 LYS 321 LYS 322 GLY 323 GLN 324 ILE 325 ILE 326 GLY 327 ARG 328 VAL 329 GLY 330 SER 331 THR 332 GLY 337 PRO 338 HIS 339 LEU 340 HIS 341 PHE 342 GLY 343 VAL 344 TYR 345 LYS 346 ASN 347 SER 348 ARG 349 PRO 350 ILE 351 ASN 352 PRO 353 LEU 354 GLY 355 TYR 356 ILE 357 ARG 358 THR 359 ALA 360 LYS 361 SER 362 LYS 363 LEU 364 HIS 365 GLY 366 LYS 367 GLN 368 ARG 369 GLU 370 VAL 371 PHE 372 LEU 373 GLU 374 LYS 375 ALA 376 GLN 377 ARG 378 SER 379 LYS 380 GLN 381 LYS 382 LEU 383 GLU 384 GLU 385 LEU 386 LEU 387 LYS 388 THR 389 HIS 390 SER 391 PHE 392 GLU 393 LYS 394 ASN 395 SER 396 PHE 397 TYR 398 LEU 399 LEU 400 GLU 401 GLY 402 PHE 403

Ligands

Unit 3	ZN 501 SO4 502 SO4 503 SO4 504 SO4 505 GOL 506 GOL 507 GOL 508 GOL 509
Unit 4	ZN 501 SO4 502 SO4 503 SO4 504 SO4 505 SO4 506 GOL 507