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Sequence, Chains, Asymmetric and Biological Units

Title THE CLEAR CRYSTAL STRUCTURE OF PYRIDOXAL-DEPENDENT DECARBOXY SPHAEROBACTER THERMOPHILUS DSM 20745
Keywords STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTU GENOMICS, MCSG, A/B/A FOLD, LYASE, CYTOSOLIC
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4RLG     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PYRIDOXAL-DEPENDENT DECARBOXYLASE  A 472 3478 136
2  Protein   PYRIDOXAL-DEPENDENT DECARBOXYLASE  B 470 3464 128
3  Protein   PYRIDOXAL-DEPENDENT DECARBOXYLASE  D 470 3470 136
4  Protein   PYRIDOXAL-DEPENDENT DECARBOXYLASE  C 469 3467 136
5  Ligand   PYRIDOXAL-DEPENDENT DECARBOXYLASE  A 3 0 23
6  Ligand   PYRIDOXAL-DEPENDENT DECARBOXYLASE  B 4 0 29
7  Ligand   PYRIDOXAL-DEPENDENT DECARBOXYLASE  D 5 0 37
8  Ligand   PYRIDOXAL-DEPENDENT DECARBOXYLASE  C 3 0 23
9 Water     1149 0 1149
total       3045 13879 1797
Proteins
Unit 1 ALA0 MSE1 ASP2 SER3 ARG4 PHE5 LEU6 PRO7 ALA8 THR9 ALA10 PHE11 ILE12 ASP13 PRO14 GLU15 GLY16 ARG17 ASN18 ARG19 ASN20 GLU21 VAL22 GLU23 ARG24 LEU25 VAL26 GLN27 GLN28 VAL29 VAL30 ASP31 LEU32 ILE33 LEU34 ALA35 LYS36 LEU37 THR38 GLY39 ALA40 ALA41 GLU42 ARG43 PRO44 PRO45 MSE46 PRO47 GLU48 THR49 LEU52 PRO53 GLY54 PRO55 ILE56 THR57 ILE58 PRO59 GLU60 ALA61 ALA62 ALA63 THR64 GLU65 ALA66 THR67 LEU68 LEU69 GLN70 ALA71 ILE72 ARG73 ASP74 MSE75 VAL76 ASP77 GLY78 SER79 MSE80 ASN81 PRO82 ALA83 ASN84 PRO85 GLY86 TYR87 ILE88 GLY89 HIS90 MSE91 ASP92 PRO93 MSE94 PRO95 ALA96 THR97 MSE98 ALA99 ILE100 LEU101 GLY102 ASP103 LEU104 VAL105 ALA106 ALA107 ALA108 VAL109 ASN110 ASN111 ASN112 MSE113 LEU114 SER115 LEU116 GLU117 MSE118 SER119 PRO120 SER121 PHE122 SER123 ARG124 LEU125 GLU126 THR127 LEU128 LEU129 LEU130 ARG131 ALA132 ILE133 ALA134 GLY135 LEU136 PHE137 GLY138 LEU139 GLY140 GLU141 GLN142 ALA143 GLY144 GLY145 VAL146 LEU147 THR148 SER149 GLY150 GLY151 SER152 LEU153 ALA154 ASN155 LEU156 GLN157 ALA158 LEU159 ALA160 VAL161 ALA162 ARG163 ASN164 VAL165 ALA166 PHE167 ASP168 SER169 VAL170 GLU171 PRO172 GLY173 ILE174 THR175 GLY176 LEU177 ALA178 GLN179 ARG180 PRO181 VAL182 ILE183 PHE184 ALA185 SER186 GLU187 ALA188 ALA189 HIS190 THR191 SER192 LEU193 GLN194 LYS195 ALA196 ALA197 MSE198 LEU199 LEU200 GLY201 LEU202 GLY203 THR204 ALA205 ALA206 VAL207 ILE208 PRO209 VAL210 ARG211 ALA212 THR213 ALA214 ASP215 SER216 ARG217 MSE218 ASP219 PRO220 GLU221 ASP222 LEU223 ARG224 ALA225 ARG226 ILE227 ASP228 GLN229 ALA230 ARG231 GLY232 ALA233 GLY234 GLN235 HIS236 PRO237 PHE238 CYS239 VAL240 VAL241 ALA242 THR243 ALA244 GLY245 THR246 THR247 THR248 THR249 GLY250 ASN251 ILE252 ASP253 PRO254 LEU255 ALA256 GLU257 ILE258 GLY259 ALA260 ILE261 ALA262 ARG263 GLU264 HIS265 GLY266 LEU267 TRP268 PHE269 HIS270 VAL271 ASP272 ALA273 ALA274 TYR275 GLY276 GLY277 ALA278 LEU279 VAL280 PHE281 SER282 GLU283 ARG284 HIS285 ARG286 TRP287 ARG288 LEU289 ALA290 GLY291 ILE292 GLU293 GLN294 ALA295 ASP296 SER297 ILE298 THR299 PHE300 ASN301 PRO302 GLN303 LLP304 TRP305 LEU306 TYR307 VAL308 ALA309 LYS310 THR311 CYS312 ALA313 MSE314 VAL315 LEU316 PHE317 ARG318 ASP319 ALA320 GLY321 VAL322 LEU323 GLU324 ARG325 ALA326 PHE327 ARG328 ILE329 PRO330 ALA331 TYR333 MSE334 ARG335 ASP338 GLY339 PHE340 ILE341 ASN342 LEU343 GLY344 GLU345 ILE346 GLY347 VAL348 GLN349 GLY350 THR351 ARG352 HIS353 ALA354 ASP355 VAL356 VAL357 LYS358 LEU359 TRP360 LEU361 THR362 LEU363 GLN364 HIS365 ILE366 GLY367 GLN368 GLN369 GLY370 TYR371 ALA372 ARG373 LEU374 ILE375 ASP376 ASP377 GLY378 TYR379 ARG380 LEU381 ALA382 GLU383 ARG384 VAL385 VAL386 GLU387 GLY388 VAL389 ARG390 GLN391 ARG392 PRO393 PHE394 LEU395 ARG396 LEU397 ALA398 GLY399 GLU400 ILE401 ASP402 THR403 ASN404 ILE405 VAL406 CYS407 PHE408 ARG409 GLY410 GLU411 PRO412 ASP413 TRP414 LEU415 PRO416 ALA417 GLU418 ARG419 TRP420 ASP421 ASP422 TRP423 ASN424 ALA425 ALA426 LEU427 GLN428 ALA429 LEU430 LEU431 LEU432 ARG433 GLU434 GLY435 LYS436 ILE437 PHE438 LEU439 SER440 LEU441 PRO442 VAL443 TYR444 ARG445 GLY446 GLY447 ARG448 TRP449 LEU450 ARG451 ALA452 VAL453 LEU454 LEU455 ASN456 PRO457 TYR458 THR459 THR460 ASP461 ALA462 VAL463 ILE464 ASP465 ALA466 MSE467 PHE468 LYS469 GLN470 ILE471 ASP472 ARG473 PHE474 ALA475 GLY476
Unit 2 ASN-1 ALA0 MSE1 ASP2 SER3 ARG4 PHE5 LEU6 PRO7 ALA8 THR9 ALA10 PHE11 ILE12 ASP13 PRO14 GLU15 GLY16 ARG17 ASN18 ARG19 ASN20 GLU21 VAL22 GLU23 ARG24 LEU25 VAL26 GLN27 GLN28 VAL29 VAL30 ASP31 LEU32 ILE33 LEU34 ALA35 LYS36 LEU37 THR38 GLY39 ALA40 ALA41 GLU42 ARG43 PRO44 PRO45 MSE46 PRO47 GLU48 THR49 VAL50 LEU52 PRO53 GLY54 PRO55 ILE56 THR57 ILE58 PRO59 GLU60 ALA61 ALA62 ALA63 THR64 GLU65 ALA66 THR67 LEU68 LEU69 GLN70 ALA71 ILE72 ARG73 ASP74 MSE75 VAL76 ASP77 GLY78 SER79 MSE80 ASN81 PRO82 ALA83 ASN84 PRO85 GLY86 TYR87 ILE88 GLY89 HIS90 MSE91 ASP92 PRO93 MSE94 PRO95 ALA96 THR97 MSE98 ALA99 ILE100 LEU101 GLY102 ASP103 LEU104 VAL105 ALA106 ALA107 ALA108 VAL109 ASN110 ASN111 ASN112 MSE113 LEU114 SER115 LEU116 GLU117 MSE118 SER119 PRO120 SER121 PHE122 SER123 ARG124 LEU125 GLU126 THR127 LEU128 LEU129 LEU130 ARG131 ALA132 ILE133 ALA134 GLY135 LEU136 PHE137 GLY138 LEU139 GLY140 GLU141 GLN142 ALA143 GLY144 GLY145 VAL146 LEU147 THR148 SER149 GLY150 GLY151 SER152 LEU153 ALA154 ASN155 LEU156 GLN157 ALA158 LEU159 ALA160 VAL161 ALA162 ARG163 ASN164 VAL165 ALA166 PHE167 ASP168 SER169 VAL170 GLU171 PRO172 GLY173 ILE174 THR175 GLY176 LEU177 ALA178 GLN179 ARG180 PRO181 VAL182 ILE183 PHE184 ALA185 SER186 GLU187 ALA188 ALA189 HIS190 THR191 SER192 LEU193 GLN194 LYS195 ALA196 ALA197 MSE198 LEU199 LEU200 GLY201 LEU202 GLY203 THR204 ALA205 ALA206 VAL207 ILE208 PRO209 VAL210 ARG211 ALA212 THR213 ALA214 ASP215 SER216 ARG217 MSE218 ASP219 PRO220 GLU221 ASP222 LEU223 ARG224 ALA225 ARG226 ILE227 ASP228 GLN229 ALA230 ARG231 GLY232 ALA233 GLY234 GLN235 HIS236 PRO237 PHE238 CYS239 VAL240 VAL241 ALA242 THR243 ALA244 GLY245 THR246 THR247 THR248 THR249 GLY250 ASN251 ILE252 ASP253 PRO254 LEU255 ALA256 GLU257 ILE258 GLY259 ALA260 ILE261 ALA262 ARG263 GLU264 HIS265 GLY266 LEU267 TRP268 PHE269 HIS270 VAL271 ASP272 ALA273 ALA274 TYR275 GLY276 GLY277 ALA278 LEU279 VAL280 PHE281 SER282 GLU283 ARG284 HIS285 ARG286 TRP287 ARG288 LEU289 ALA290 GLY291 ILE292 GLU293 GLN294 ALA295 ASP296 SER297 ILE298 THR299 PHE300 ASN301 PRO302 GLN303 LLP304 TRP305 LEU306 TYR307 VAL308 ALA309 LYS310 THR311 CYS312 ALA313 MSE314 VAL315 LEU316 PHE317 ARG318 ASP319 ALA320 GLY321 VAL322 LEU323 GLU324 ARG325 ALA326 PHE327 ARG328 ILE329 PRO330 ALA331 PHE340 ILE341 ASN342 LEU343 GLY344 GLU345 ILE346 GLY347 VAL348 GLN349 GLY350 THR351 ARG352 HIS353 ALA354 ASP355 VAL356 VAL357 LYS358 LEU359 TRP360 LEU361 THR362 LEU363 GLN364 HIS365 ILE366 GLY367 GLN368 GLN369 GLY370 TYR371 ALA372 ARG373 LEU374 ILE375 ASP376 ASP377 GLY378 TYR379 ARG380 LEU381 ALA382 GLU383 ARG384 VAL385 VAL386 GLU387 GLY388 VAL389 ARG390 GLN391 ARG392 PRO393 PHE394 LEU395 ARG396 LEU397 ALA398 GLY399 GLU400 ILE401 ASP402 THR403 ASN404 ILE405 VAL406 CYS407 PHE408 ARG409 GLY410 GLU411 PRO412 ASP413 TRP414 LEU415 PRO416 ALA417 GLU418 ARG419 TRP420 ASP421 ASP422 TRP423 ASN424 ALA425 ALA426 LEU427 GLN428 ALA429 LEU430 LEU431 LEU432 ARG433 GLU434 GLY435 LYS436 ILE437 PHE438 LEU439 SER440 LEU441 PRO442 VAL443 TYR444 ARG445 GLY446 GLY447 ARG448 TRP449 LEU450 ARG451 ALA452 VAL453 LEU454 LEU455 ASN456 PRO457 TYR458 THR459 THR460 ASP461 ALA462 VAL463 ILE464 ASP465 ALA466 MSE467 PHE468 LYS469 GLN470 ILE471 ASP472 ARG473 PHE474 ALA475 GLY476 ARG477
Unit 3 ASN-1 ALA0 MSE1 ASP2 SER3 ARG4 PHE5 LEU6 PRO7 ALA8 THR9 ALA10 PHE11 ILE12 ASP13 PRO14 GLU15 GLY16 ARG17 ASN18 ARG19 ASN20 GLU21 VAL22 GLU23 ARG24 LEU25 VAL26 GLN27 GLN28 VAL29 VAL30 ASP31 LEU32 ILE33 LEU34 ALA35 LYS36 LEU37 THR38 GLY39 ALA40 ALA41 GLU42 ARG43 PRO44 PRO45 MSE46 PRO47 GLU48 ILE56 THR57 ILE58 PRO59 GLU60 ALA61 ALA62 ALA63 THR64 GLU65 ALA66 THR67 LEU68 LEU69 GLN70 ALA71 ILE72 ARG73 ASP74 MSE75 VAL76 ASP77 GLY78 SER79 MSE80 ASN81 PRO82 ALA83 ASN84 PRO85 GLY86 TYR87 ILE88 GLY89 HIS90 MSE91 ASP92 PRO93 MSE94 PRO95 ALA96 THR97 MSE98 ALA99 ILE100 LEU101 GLY102 ASP103 LEU104 VAL105 ALA106 ALA107 ALA108 VAL109 ASN110 ASN111 ASN112 MSE113 LEU114 SER115 LEU116 GLU117 MSE118 SER119 PRO120 SER121 PHE122 SER123 ARG124 LEU125 GLU126 THR127 LEU128 LEU129 LEU130 ARG131 ALA132 ILE133 ALA134 GLY135 LEU136 PHE137 GLY138 LEU139 GLY140 GLU141 GLN142 ALA143 GLY144 GLY145 VAL146 LEU147 THR148 SER149 GLY150 GLY151 SER152 LEU153 ALA154 ASN155 LEU156 GLN157 ALA158 LEU159 ALA160 VAL161 ALA162 ARG163 ASN164 VAL165 ALA166 PHE167 ASP168 SER169 VAL170 GLU171 PRO172 GLY173 ILE174 THR175 GLY176 LEU177 ALA178 GLN179 ARG180 PRO181 VAL182 ILE183 PHE184 ALA185 SER186 GLU187 ALA188 ALA189 HIS190 THR191 SER192 LEU193 GLN194 LYS195 ALA196 ALA197 MSE198 LEU199 LEU200 GLY201 LEU202 GLY203 THR204 ALA205 ALA206 VAL207 ILE208 PRO209 VAL210 ARG211 ALA212 THR213 ALA214 ASP215 SER216 ARG217 MSE218 ASP219 PRO220 GLU221 ASP222 LEU223 ARG224 ALA225 ARG226 ILE227 ASP228 GLN229 ALA230 ARG231 GLY232 ALA233 GLY234 GLN235 HIS236 PRO237 PHE238 CYS239 VAL240 VAL241 ALA242 THR243 ALA244 GLY245 THR246 THR247 THR248 THR249 GLY250 ASN251 ILE252 ASP253 PRO254 LEU255 ALA256 GLU257 ILE258 GLY259 ALA260 ILE261 ALA262 ARG263 GLU264 HIS265 GLY266 LEU267 TRP268 PHE269 HIS270 VAL271 ASP272 ALA273 ALA274 TYR275 GLY276 GLY277 ALA278 LEU279 VAL280 PHE281 SER282 GLU283 ARG284 HIS285 ARG286 TRP287 ARG288 LEU289 ALA290 GLY291 ILE292 GLU293 GLN294 ALA295 ASP296 SER297 ILE298 THR299 PHE300 ASN301 PRO302 GLN303 LLP304 TRP305 LEU306 TYR307 VAL308 ALA309 LYS310 THR311 CYS312 ALA313 MSE314 VAL315 LEU316 PHE317 ARG318 ASP319 ALA320 GLY321 VAL322 LEU323 GLU324 ARG325 ALA326 PHE327 ARG328 ILE329 PRO330 PRO332 TYR333 MSE334 ARG335 ALA336 THR337 ASP338 GLY339 PHE340 ILE341 ASN342 LEU343 GLY344 GLU345 ILE346 GLY347 VAL348 GLN349 GLY350 THR351 ARG352 HIS353 ALA354 ASP355 VAL356 VAL357 LYS358 LEU359 TRP360 LEU361 THR362 LEU363 GLN364 HIS365 ILE366 GLY367 GLN368 GLN369 GLY370 TYR371 ALA372 ARG373 LEU374 ILE375 ASP376 ASP377 GLY378 TYR379 ARG380 LEU381 ALA382 GLU383 ARG384 VAL385 VAL386 GLU387 GLY388 VAL389 ARG390 GLN391 ARG392 PRO393 PHE394 LEU395 ARG396 LEU397 ALA398 GLY399 GLU400 ILE401 ASP402 THR403 ASN404 ILE405 VAL406 CYS407 PHE408 ARG409 GLY410 GLU411 PRO412 ASP413 TRP414 LEU415 PRO416 ALA417 GLU418 ARG419 TRP420 ASP421 ASP422 TRP423 ASN424 ALA425 ALA426 LEU427 GLN428 ALA429 LEU430 LEU431 LEU432 ARG433 GLU434 GLY435 LYS436 ILE437 PHE438 LEU439 SER440 LEU441 PRO442 VAL443 TYR444 ARG445 GLY446 GLY447 ARG448 TRP449 LEU450 ARG451 ALA452 VAL453 LEU454 LEU455 ASN456 PRO457 TYR458 THR459 THR460 ASP461 ALA462 VAL463 ILE464 ASP465 ALA466 MSE467 PHE468 LYS469 GLN470 ILE471 ASP472 ARG473 PHE474 ALA475 GLY476
Unit 4 ASN-1 ALA0 MSE1 ASP2 SER3 ARG4 PHE5 LEU6 PRO7 ALA8 THR9 ALA10 PHE11 ILE12 ASP13 PRO14 GLU15 GLY16 ARG17 ASN18 ARG19 ASN20 GLU21 VAL22 GLU23 ARG24 LEU25 VAL26 GLN27 GLN28 VAL29 VAL30 ASP31 LEU32 ILE33 LEU34 ALA35 LYS36 LEU37 THR38 GLY39 ALA40 ALA41 GLU42 ARG43 PRO44 PRO45 MSE46 PRO47 GLU48 ILE56 THR57 ILE58 PRO59 GLU60 ALA61 ALA62 ALA63 THR64 GLU65 ALA66 THR67 LEU68 LEU69 GLN70 ALA71 ILE72 ARG73 ASP74 MSE75 VAL76 ASP77 GLY78 SER79 MSE80 ASN81 PRO82 ALA83 ASN84 PRO85 GLY86 TYR87 ILE88 GLY89 HIS90 MSE91 ASP92 PRO93 MSE94 PRO95 ALA96 THR97 MSE98 ALA99 ILE100 LEU101 GLY102 ASP103 LEU104 VAL105 ALA106 ALA107 ALA108 VAL109 ASN110 ASN111 ASN112 MSE113 LEU114 SER115 LEU116 GLU117 MSE118 SER119 PRO120 SER121 PHE122 SER123 ARG124 LEU125 GLU126 THR127 LEU128 LEU129 LEU130 ARG131 ALA132 ILE133 ALA134 GLY135 LEU136 PHE137 GLY138 LEU139 GLY140 GLU141 GLN142 ALA143 GLY144 GLY145 VAL146 LEU147 THR148 SER149 GLY150 GLY151 SER152 LEU153 ALA154 ASN155 LEU156 GLN157 ALA158 LEU159 ALA160 VAL161 ALA162 ARG163 ASN164 VAL165 ALA166 PHE167 ASP168 SER169 VAL170 GLU171 PRO172 GLY173 ILE174 THR175 GLY176 LEU177 ALA178 GLN179 ARG180 PRO181 VAL182 ILE183 PHE184 ALA185 SER186 GLU187 ALA188 ALA189 HIS190 THR191 SER192 LEU193 GLN194 LYS195 ALA196 ALA197 MSE198 LEU199 LEU200 GLY201 LEU202 GLY203 THR204 ALA205 ALA206 VAL207 ILE208 PRO209 VAL210 ARG211 ALA212 THR213 ALA214 ASP215 SER216 ARG217 MSE218 ASP219 PRO220 GLU221 ASP222 LEU223 ARG224 ALA225 ARG226 ILE227 ASP228 GLN229 ALA230 ARG231 GLY232 ALA233 GLY234 GLN235 HIS236 PRO237 PHE238 CYS239 VAL240 VAL241 ALA242 THR243 ALA244 GLY245 THR246 THR247 THR248 THR249 GLY250 ASN251 ILE252 ASP253 PRO254 LEU255 ALA256 GLU257 ILE258 GLY259 ALA260 ILE261 ALA262 ARG263 GLU264 HIS265 GLY266 LEU267 TRP268 PHE269 HIS270 VAL271 ASP272 ALA273 ALA274 TYR275 GLY276 GLY277 ALA278 LEU279 VAL280 PHE281 SER282 GLU283 ARG284 HIS285 ARG286 TRP287 ARG288 LEU289 ALA290 GLY291 ILE292 GLU293 GLN294 ALA295 ASP296 SER297 ILE298 THR299 PHE300 ASN301 PRO302 GLN303 LLP304 TRP305 LEU306 TYR307 VAL308 ALA309 LYS310 THR311 CYS312 ALA313 MSE314 VAL315 LEU316 PHE317 ARG318 ASP319 ALA320 GLY321 VAL322 LEU323 GLU324 ARG325 ALA326 PHE327 ARG328 ILE329 PRO330 ALA331 TYR333 MSE334 ARG335 THR337 ASP338 GLY339 PHE340 ILE341 ASN342 LEU343 GLY344 GLU345 ILE346 GLY347 VAL348 GLN349 GLY350 THR351 ARG352 HIS353 ALA354 ASP355 VAL356 VAL357 LYS358 LEU359 TRP360 LEU361 THR362 LEU363 GLN364 HIS365 ILE366 GLY367 GLN368 GLN369 GLY370 TYR371 ALA372 ARG373 LEU374 ILE375 ASP376 ASP377 GLY378 TYR379 ARG380 LEU381 ALA382 GLU383 ARG384 VAL385 VAL386 GLU387 GLY388 VAL389 ARG390 GLN391 ARG392 PRO393 PHE394 LEU395 ARG396 LEU397 ALA398 GLY399 GLU400 ILE401 ASP402 THR403 ASN404 ILE405 VAL406 CYS407 PHE408 ARG409 GLY410 GLU411 PRO412 ASP413 TRP414 LEU415 PRO416 ALA417 GLU418 ARG419 TRP420 ASP421 ASP422 TRP423 ASN424 ALA425 ALA426 LEU427 GLN428 ALA429 LEU430 LEU431 LEU432 ARG433 GLU434 GLY435 LYS436 ILE437 PHE438 LEU439 SER440 LEU441 PRO442 VAL443 TYR444 ARG445 GLY446 GLY447 ARG448 TRP449 LEU450 ARG451 ALA452 VAL453 LEU454 LEU455 ASN456 PRO457 TYR458 THR459 THR460 ASP461 ALA462 VAL463 ILE464 ASP465 ALA466 MSE467 PHE468 LYS469 GLN470 ILE471 ASP472 ARG473 PHE474 ALA475 GLY476
Ligands
Unit 5 PMP2001 GOL2002 K2003
Unit 6 PMP501 GOL502 GOL503 K504
Unit 7 PMP501 ABU502 ABU503 GOL504 K505
Unit 8 PMP501 GOL502 K503
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany