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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE METHANOCALDOCOCCUS JANNASCHII G1PDH NADPH AND DHAP
Keywords DEHYDROGENASE, OXIDOREDUCTASE, ROSSMAN FOLD, METAL ION BINDI NADP(H) BINDING, ZN, SN-GLYCEROL-1-PHOSPHATE DEHYDROGENASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4RGQ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GLYCEROL-1-PHOSPHATE DEHYDROGENASE  A 332 2596 0
2  Protein   GLYCEROL-1-PHOSPHATE DEHYDROGENASE  B 333 2604 0
3  Protein   GLYCEROL-1-PHOSPHATE DEHYDROGENASE  C 330 2579 0
4  Protein   GLYCEROL-1-PHOSPHATE DEHYDROGENASE  D 331 2587 0
5  Ligand   GLYCEROL-1-PHOSPHATE DEHYDROGENASE  A 12 0 92
6  Ligand   GLYCEROL-1-PHOSPHATE DEHYDROGENASE  B 8 0 76
7  Ligand   GLYCEROL-1-PHOSPHATE DEHYDROGENASE  C 7 0 72
8  Ligand   GLYCEROL-1-PHOSPHATE DEHYDROGENASE  D 8 0 76
9 Water     464 0 464
total       1825 10366 780
Proteins
Unit 1 ILE2 ILE3 VAL4 THR5 PRO6 ARG7 TYR8 THR9 ILE10 ILE11 GLU12 ASP13 GLY14 ALA15 ILE16 ASN17 LYS18 ILE19 GLU20 GLU21 ILE22 LEU23 LYS24 LYS25 LEU26 ASN27 LEU28 LYS29 ASN30 PRO31 LEU32 VAL33 ILE34 THR35 GLY36 LYS37 ASN38 THR39 LYS40 LYS41 TYR42 CYS43 ARG44 PHE45 PHE46 TYR47 ASP48 ILE49 VAL50 TYR51 TYR52 ASP53 GLU54 ILE55 LEU56 ASN57 ASN58 LEU59 GLU60 ILE61 LYS64 LYS65 TYR66 THR67 ALA68 TYR69 ASP70 CYS71 VAL72 ILE73 GLY74 ILE75 GLY76 GLY77 GLY78 ARG79 SER80 ILE81 ASP82 THR83 GLY84 LYS85 TYR86 LEU87 ALA88 TYR89 LYS90 LEU91 GLY92 ILE93 PRO94 PHE95 ILE96 SER97 VAL98 PRO99 THR100 THR101 ALA102 SER103 ASN104 ASP105 GLY106 ILE107 ALA108 SER109 PRO110 ILE111 VAL112 SER113 ILE114 ARG115 GLN116 PRO117 SER118 PHE119 MET120 VAL121 ASP122 ALA123 PRO124 ILE125 ALA126 ILE127 ILE128 ALA129 ASP130 THR131 GLU132 ILE133 ILE134 LYS135 LYS136 SER137 PRO138 ARG139 ARG140 LEU141 LEU142 SER143 ALA144 GLY145 MET146 GLY147 ASP148 ILE149 VAL150 SER151 ASN152 ILE153 THR154 ALA155 VAL156 LEU157 ASP158 TRP159 LYS160 LEU161 ALA162 TYR163 LYS164 GLU165 LYS166 GLY167 GLU168 LYS169 TYR170 SER171 GLU172 SER173 SER174 ALA175 ILE176 PHE177 SER178 LYS179 THR180 ILE181 ALA182 LYS183 GLU184 LEU185 ILE186 SER187 TYR188 VAL189 LEU190 ASN191 SER192 ASP193 LEU194 SER195 GLU196 TYR197 HIS198 ASN199 LYS200 LEU201 VAL202 LYS203 ALA204 LEU205 VAL206 GLY207 SER208 GLY209 ILE210 ALA211 ILE212 ALA213 ILE214 ALA215 ASN216 SER217 SER218 ARG219 PRO220 ALA221 SER222 GLY223 SER224 GLU225 HIS226 LEU227 PHE228 SER229 HIS230 ALA231 LEU232 ASP233 LYS234 LEU235 LYS236 GLU237 GLU238 TYR239 ASN240 LEU241 ASN242 ILE243 ASN244 SER245 LEU246 HIS247 GLY248 GLU249 GLN250 CYS251 GLY252 ILE253 GLY254 THR255 ILE256 MET257 MET258 SER259 TYR260 LEU261 HIS262 GLU263 LYS264 GLU265 ASN266 LYS267 LYS268 LEU269 SER270 GLY271 LEU272 HIS273 GLU274 LYS275 ILE276 LYS277 MET278 SER279 LEU280 LYS281 LYS282 VAL283 ASP284 ALA285 PRO286 THR287 THR288 ALA289 LYS290 GLU291 LEU292 GLY293 PHE294 ASP295 GLU296 ASP297 ILE298 ILE299 ILE300 GLU301 ALA302 LEU303 THR304 MET305 ALA306 HIS307 LYS308 ILE309 ARG310 ASN311 ARG312 TRP313 THR314 ILE315 LEU316 ARG317 ASP318 GLY319 LEU320 SER321 ARG322 GLU323 GLU324 ALA325 ARG326 LYS327 LEU328 ALA329 GLU330 GLU331 THR332 GLY333 VAL334 ILE335
Unit 2 MET1 ILE2 ILE3 VAL4 THR5 PRO6 ARG7 TYR8 THR9 ILE10 ILE11 GLU12 ASP13 GLY14 ALA15 ILE16 ASN17 LYS18 ILE19 GLU20 GLU21 ILE22 LEU23 LYS24 LYS25 LEU26 ASN27 LEU28 LYS29 ASN30 PRO31 LEU32 VAL33 ILE34 THR35 GLY36 LYS37 ASN38 THR39 LYS40 LYS41 TYR42 CYS43 ARG44 PHE45 PHE46 TYR47 ASP48 ILE49 VAL50 TYR51 TYR52 ASP53 GLU54 ILE55 LEU56 ASN57 ASN58 LEU59 GLU60 ILE61 LYS64 LYS65 TYR66 THR67 ALA68 TYR69 ASP70 CYS71 VAL72 ILE73 GLY74 ILE75 GLY76 GLY77 GLY78 ARG79 SER80 ILE81 ASP82 THR83 GLY84 LYS85 TYR86 LEU87 ALA88 TYR89 LYS90 LEU91 GLY92 ILE93 PRO94 PHE95 ILE96 SER97 VAL98 PRO99 THR100 THR101 ALA102 SER103 ASN104 ASP105 GLY106 ILE107 ALA108 SER109 PRO110 ILE111 VAL112 SER113 ILE114 ARG115 GLN116 PRO117 SER118 PHE119 MET120 VAL121 ASP122 ALA123 PRO124 ILE125 ALA126 ILE127 ILE128 ALA129 ASP130 THR131 GLU132 ILE133 ILE134 LYS135 LYS136 SER137 PRO138 ARG139 ARG140 LEU141 LEU142 SER143 ALA144 GLY145 MET146 GLY147 ASP148 ILE149 VAL150 SER151 ASN152 ILE153 THR154 ALA155 VAL156 LEU157 ASP158 TRP159 LYS160 LEU161 ALA162 TYR163 LYS164 GLU165 LYS166 GLY167 GLU168 LYS169 TYR170 SER171 GLU172 SER173 SER174 ALA175 ILE176 PHE177 SER178 LYS179 THR180 ILE181 ALA182 LYS183 GLU184 LEU185 ILE186 SER187 TYR188 VAL189 LEU190 ASN191 SER192 ASP193 LEU194 SER195 GLU196 TYR197 HIS198 ASN199 LYS200 LEU201 VAL202 LYS203 ALA204 LEU205 VAL206 GLY207 SER208 GLY209 ILE210 ALA211 ILE212 ALA213 ILE214 ALA215 ASN216 SER217 SER218 ARG219 PRO220 ALA221 SER222 GLY223 SER224 GLU225 HIS226 LEU227 PHE228 SER229 HIS230 ALA231 LEU232 ASP233 LYS234 LEU235 LYS236 GLU237 GLU238 TYR239 ASN240 LEU241 ASN242 ILE243 ASN244 SER245 LEU246 HIS247 GLY248 GLU249 GLN250 CYS251 GLY252 ILE253 GLY254 THR255 ILE256 MET257 MET258 SER259 TYR260 LEU261 HIS262 GLU263 LYS264 GLU265 ASN266 LYS267 LYS268 LEU269 SER270 GLY271 LEU272 HIS273 GLU274 LYS275 ILE276 LYS277 MET278 SER279 LEU280 LYS281 LYS282 VAL283 ASP284 ALA285 PRO286 THR287 THR288 ALA289 LYS290 GLU291 LEU292 GLY293 PHE294 ASP295 GLU296 ASP297 ILE298 ILE299 ILE300 GLU301 ALA302 LEU303 THR304 MET305 ALA306 HIS307 LYS308 ILE309 ARG310 ASN311 ARG312 TRP313 THR314 ILE315 LEU316 ARG317 ASP318 GLY319 LEU320 SER321 ARG322 GLU323 GLU324 ALA325 ARG326 LYS327 LEU328 ALA329 GLU330 GLU331 THR332 GLY333 VAL334 ILE335
Unit 3 ILE2 ILE3 VAL4 THR5 PRO6 ARG7 TYR8 THR9 ILE10 ILE11 GLU12 ASP13 GLY14 ALA15 ILE16 ASN17 LYS18 ILE19 GLU20 GLU21 ILE22 LEU23 LYS24 LYS25 LEU26 ASN27 LEU28 LYS29 ASN30 PRO31 LEU32 VAL33 ILE34 THR35 GLY36 LYS37 ASN38 THR39 LYS40 LYS41 TYR42 CYS43 ARG44 PHE45 PHE46 TYR47 ASP48 ILE49 VAL50 TYR51 TYR52 ASP53 GLU54 ILE55 LEU56 ASN57 ASN58 LEU59 LYS64 LYS65 TYR66 THR67 ALA68 TYR69 ASP70 CYS71 VAL72 ILE73 GLY74 ILE75 GLY76 GLY77 GLY78 ARG79 SER80 ILE81 ASP82 THR83 GLY84 LYS85 TYR86 LEU87 ALA88 TYR89 LYS90 LEU91 GLY92 ILE93 PRO94 PHE95 ILE96 SER97 VAL98 PRO99 THR100 THR101 ALA102 SER103 ASN104 ASP105 GLY106 ILE107 ALA108 SER109 PRO110 ILE111 VAL112 SER113 ILE114 ARG115 GLN116 PRO117 SER118 PHE119 MET120 VAL121 ASP122 ALA123 PRO124 ILE125 ALA126 ILE127 ILE128 ALA129 ASP130 THR131 GLU132 ILE133 ILE134 LYS135 LYS136 SER137 PRO138 ARG139 ARG140 LEU141 LEU142 SER143 ALA144 GLY145 MET146 GLY147 ASP148 ILE149 VAL150 SER151 ASN152 ILE153 THR154 ALA155 VAL156 LEU157 ASP158 TRP159 LYS160 LEU161 ALA162 TYR163 LYS164 GLU165 LYS166 GLY167 GLU168 LYS169 TYR170 SER171 GLU172 SER173 SER174 ALA175 ILE176 PHE177 SER178 LYS179 THR180 ILE181 ALA182 LYS183 GLU184 LEU185 ILE186 SER187 TYR188 VAL189 LEU190 ASN191 SER192 ASP193 LEU194 SER195 GLU196 TYR197 HIS198 ASN199 LYS200 LEU201 VAL202 LYS203 ALA204 LEU205 VAL206 GLY207 SER208 GLY209 ILE210 ALA211 ILE212 ALA213 ILE214 ALA215 ASN216 SER217 SER218 ARG219 PRO220 ALA221 SER222 GLY223 SER224 GLU225 HIS226 LEU227 PHE228 SER229 HIS230 ALA231 LEU232 ASP233 LYS234 LEU235 LYS236 GLU237 GLU238 TYR239 ASN240 LEU241 ASN242 ILE243 ASN244 SER245 LEU246 HIS247 GLY248 GLU249 GLN250 CYS251 GLY252 ILE253 GLY254 THR255 ILE256 MET257 MET258 SER259 TYR260 LEU261 HIS262 GLU263 LYS264 GLU265 ASN266 LYS267 LYS268 LEU269 SER270 GLY271 LEU272 HIS273 GLU274 LYS275 ILE276 LYS277 MET278 SER279 LEU280 LYS281 LYS282 VAL283 ASP284 ALA285 PRO286 THR287 THR288 ALA289 LYS290 GLU291 LEU292 GLY293 PHE294 ASP295 GLU296 ASP297 ILE298 ILE299 ILE300 GLU301 ALA302 LEU303 THR304 MET305 ALA306 HIS307 LYS308 ILE309 ARG310 ASN311 ARG312 TRP313 THR314 ILE315 LEU316 ARG317 ASP318 GLY319 LEU320 SER321 ARG322 GLU323 GLU324 ALA325 ARG326 LYS327 LEU328 ALA329 GLU330 GLU331 THR332 GLY333 VAL334 ILE335
Unit 4 MET1 ILE2 ILE3 VAL4 THR5 PRO6 ARG7 TYR8 THR9 ILE10 ILE11 GLU12 ASP13 GLY14 ALA15 ILE16 ASN17 LYS18 ILE19 GLU20 GLU21 ILE22 LEU23 LYS24 LYS25 LEU26 ASN27 LEU28 LYS29 ASN30 PRO31 LEU32 VAL33 ILE34 THR35 GLY36 LYS37 ASN38 THR39 LYS40 LYS41 TYR42 CYS43 ARG44 PHE45 PHE46 TYR47 ASP48 ILE49 VAL50 TYR51 TYR52 ASP53 GLU54 ILE55 LEU56 ASN57 ASN58 LEU59 LYS64 LYS65 TYR66 THR67 ALA68 TYR69 ASP70 CYS71 VAL72 ILE73 GLY74 ILE75 GLY76 GLY77 GLY78 ARG79 SER80 ILE81 ASP82 THR83 GLY84 LYS85 TYR86 LEU87 ALA88 TYR89 LYS90 LEU91 GLY92 ILE93 PRO94 PHE95 ILE96 SER97 VAL98 PRO99 THR100 THR101 ALA102 SER103 ASN104 ASP105 GLY106 ILE107 ALA108 SER109 PRO110 ILE111 VAL112 SER113 ILE114 ARG115 GLN116 PRO117 SER118 PHE119 MET120 VAL121 ASP122 ALA123 PRO124 ILE125 ALA126 ILE127 ILE128 ALA129 ASP130 THR131 GLU132 ILE133 ILE134 LYS135 LYS136 SER137 PRO138 ARG139 ARG140 LEU141 LEU142 SER143 ALA144 GLY145 MET146 GLY147 ASP148 ILE149 VAL150 SER151 ASN152 ILE153 THR154 ALA155 VAL156 LEU157 ASP158 TRP159 LYS160 LEU161 ALA162 TYR163 LYS164 GLU165 LYS166 GLY167 GLU168 LYS169 TYR170 SER171 GLU172 SER173 SER174 ALA175 ILE176 PHE177 SER178 LYS179 THR180 ILE181 ALA182 LYS183 GLU184 LEU185 ILE186 SER187 TYR188 VAL189 LEU190 ASN191 SER192 ASP193 LEU194 SER195 GLU196 TYR197 HIS198 ASN199 LYS200 LEU201 VAL202 LYS203 ALA204 LEU205 VAL206 GLY207 SER208 GLY209 ILE210 ALA211 ILE212 ALA213 ILE214 ALA215 ASN216 SER217 SER218 ARG219 PRO220 ALA221 SER222 GLY223 SER224 GLU225 HIS226 LEU227 PHE228 SER229 HIS230 ALA231 LEU232 ASP233 LYS234 LEU235 LYS236 GLU237 GLU238 TYR239 ASN240 LEU241 ASN242 ILE243 ASN244 SER245 LEU246 HIS247 GLY248 GLU249 GLN250 CYS251 GLY252 ILE253 GLY254 THR255 ILE256 MET257 MET258 SER259 TYR260 LEU261 HIS262 GLU263 LYS264 GLU265 ASN266 LYS267 LYS268 LEU269 SER270 GLY271 LEU272 HIS273 GLU274 LYS275 ILE276 LYS277 MET278 SER279 LEU280 LYS281 LYS282 VAL283 ASP284 ALA285 PRO286 THR287 THR288 ALA289 LYS290 GLU291 LEU292 GLY293 PHE294 ASP295 GLU296 ASP297 ILE298 ILE299 ILE300 GLU301 ALA302 LEU303 THR304 MET305 ALA306 HIS307 LYS308 ILE309 ARG310 ASN311 ARG312 TRP313 THR314 ILE315 LEU316 ARG317 ASP318 GLY319 LEU320 SER321 ARG322 GLU323 GLU324 ALA325 ARG326 LYS327 LEU328 ALA329 GLU330 GLU331 THR332 GLY333 VAL334 ILE335
Ligands
Unit 5 NDP401 K402 ZN403 13P404 EDO405 EDO406 EDO407 EDO408 EDO409 EDO410 EDO411 EDO412
Unit 6 NDP401 K402 ZN403 1GP404 EDO405 EDO406 EDO407 EDO408
Unit 7 NDP401 K402 ZN403 13P404 EDO405 EDO406 EDO407
Unit 8 NDP401 K402 ZN403 13P404 EDO405 EDO406 EDO407 EDO408
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany