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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE IN-LINE ALIGNED ENV22 TWISTER RIBOZ WITH MN2+
Keywords PSEUDOKNOT, STEMS, CLEAVAGE, RNA
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4RGF     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 56 1188 0
2  RNA    B 56 1187 0
3  RNA    C 55 1166 0
4  Ligand   ENV22 TWISTER RIBOZYME  A 12 0 12
5  Ligand   ENV22 TWISTER RIBOZYME  B 7 0 7
6  Ligand   ENV22 TWISTER RIBOZYME  C 7 0 7
7 Water     4 0 4
total       197 3541 30

Nucleic acids
Unit 1 U1 U2 U3 U4 DU5 A6 A7 U8 G9 A10 A11 G12 C13 C14 A15 C16 A17 G18 G19 C20 C21 U22 G23 U24 G25 A26 G27 G28 G29 U30 C31 C32 U33 A34 A35 G36 C37 C38 C39 C40 U41 A42 A43 U44 U45 C46 A47 G48 A49 A50 G51 G52 G53 A54 A55 A56
Unit 2 U1 U2 U3 U4 DU5 A6 A7 U8 G9 A10 A11 G12 C13 C14 A15 C16 A17 G18 G19 C20 C21 U22 G23 U24 G25 A26 G27 G28 G29 U30 C31 C32 U33 A34 A35 G36 C37 C38 C39 C40 U41 A42 A43 U44 U45 C46 A47 G48 A49 A50 G51 G52 G53 A54 A55 A56
Unit 3 U1 U2 U3 U4 DU5 A6 A7 U8 G9 A10 A11 G12 C13 C14 A15 C16 A17 G18 G19 C20 C21 U22 G23 U24 G25 A26 G27 G28 G29 U30 C31 C32 U33 A34 A35 G36 C37 C38 C39 C40 U41 A42 A43 U44 U45 C46 A47 G48 A49 A50 G51 G52 G53 A54 A55

Ligands
Unit 4 MN101 MN102 MN103 MN104 MN105 K106 K107 K108 K109 K110 K111 K112
Unit 5 MN101 MN102 K103 K104 K105 K106 K107
Unit 6 MG101 MN102 MN103 MN104 MN105 K106 K107

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany