4RFN - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF ADCC-POTENT RHESUS MACAQUE ANTIBODY JR4 COMPLEX WITH HIV-1 CLADE A/E GP120 AND M48
• Keywords: HIV-1 GP120, VIRAL PROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM COMP
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4RFN	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	HIV-1 CLADE A/E 93TH057 (H375S) GP120	G	337	2648	0
2	Protein	FAB HEAVY CHAIN OF ADCC ANTI-HIV-1 ANTIBODY JR4	H	217	1641	0
3	Protein	FAB LIGHT CHAIN OF ADCC ANTI-HIV-1 ANTIBODY JR4	L	210	1553	0
4	Protein	T-CELL SURFACE GLYCOPROTEIN CD4 MIMETIC M48	M	28	188	13
5	Protein	HIV-1 CLADE A/E 93TH057 (H375S) GP120	A	337	2648	0
6	Protein	FAB HEAVY CHAIN OF ADCC ANTI-HIV-1 ANTIBODY JR4	B	217	1641	0
7	Protein	FAB LIGHT CHAIN OF ADCC ANTI-HIV-1 ANTIBODY JR4	C	210	1553	0
8	Protein	T-CELL SURFACE GLYCOPROTEIN CD4 MIMETIC M48	D	28	188	13
9	Ligand	HIV-1 CLADE A/E 93TH057 (H375S) GP120	G	9	0	126
10	Ligand	HIV-1 CLADE A/E 93TH057 (H375S) GP120	A	9	0	126
total				1602	12060	278

Proteins

Unit 1	VAL 44 TRP 45 LYS 46 ASP 47 ALA 48 ASP 49 THR 50 THR 51 LEU 52 PHE 53 CYS 54 ALA 55 SER 56 ASP 57 ALA 58 LYS 59 ALA 60 HIS 61 GLU 62 THR 63 GLU 64 VAL 65 HIS 66 ASN 67 VAL 68 TRP 69 ALA 70 THR 71 HIS 72 ALA 73 CYS 74 VAL 75 PRO 76 THR 77 ASP 78 PRO 79 ASN 80 PRO 81 GLN 82 GLU 83 ILE 84 HIS 85 LEU 86 GLU 87 ASN 88 VAL 89 THR 90 GLU 91 ASN 92 PHE 93 ASN 94 MET 95 TRP 96 LYS 97 ASN 98 ASN 99 MET 100 VAL 101 GLU 102 GLN 103 MET 104 GLN 105 GLU 106 ASP 107 VAL 108 ILE 109 SER 110 LEU 111 TRP 112 ASP 113 GLN 114 SER 115 LEU 116 GLN 117 PRO 118 CYS 119 VAL 120 LYS 121 LEU 122 THR 123 GLY 124 SER 199 VAL 200 ILE 201 LYS 202 GLN 203 ALA 204 CYS 205 PRO 206 LYS 207 ILE 208 SER 209 PHE 210 ASP 211 PRO 212 ILE 213 PRO 214 ILE 215 HIS 216 TYR 217 CYS 218 THR 219 PRO 220 ALA 221 GLY 222 TYR 223 VAL 224 ILE 225 LEU 226 LYS 227 CYS 228 ASN 229 ASP 230 LYS 231 ASN 232 PHE 233 ASN 234 GLY 235 THR 236 GLY 237 PRO 238 CYS 239 LYS 240 ASN 241 VAL 242 SER 243 SER 244 VAL 245 GLN 246 CYS 247 THR 248 HIS 249 GLY 250 ILE 251 LYS 252 PRO 253 VAL 254 VAL 255 SER 256 THR 257 GLN 258 LEU 259 LEU 260 LEU 261 ASN 262 GLY 263 SER 264 LEU 265 ALA 266 GLU 267 GLU 268 GLU 269 ILE 270 ILE 271 ILE 272 ARG 273 SER 274 GLU 275 ASN 276 LEU 277 THR 278 ASN 279 ASN 280 ALA 281 LYS 282 THR 283 ILE 284 ILE 285 VAL 286 HIS 287 LEU 288 ASN 289 LYS 290 SER 291 VAL 292 GLU 293 ILE 294 ASN 295 CYS 296 THR 297 ARG 298 PRO 299 SER 300 ASN 301 ASP 325 ILE 326 ARG 327 LYS 328 ALA 329 TYR 330 CYS 331 GLU 332 ILE 333 ASN 334 GLY 335 THR 336 LYS 337 TRP 338 ASN 339 LYS 340 VAL 341 LEU 342 LYS 343 GLN 344 VAL 345 THR 346 GLU 347 LYS 348 LEU 349 LYS 350 GLU 351 HIS 352 PHE 353 ASN 354 ASN 355 LYS 357 THR 358 ILE 359 ILE 360 PHE 361 GLN 362 PRO 363 PRO 364 SER 365 GLY 366 GLY 367 ASP 368 LEU 369 GLU 370 ILE 371 THR 372 MET 373 HIS 374 SER 375 PHE 376 ASN 377 CYS 378 ARG 379 GLY 380 GLU 381 PHE 382 PHE 383 TYR 384 CYS 385 ASN 386 THR 387 THR 388 GLN 389 LEU 390 PHE 391 ASN 392 ASN 393 THR 394 CYS 395 ILE 396 LYS 408 GLY 409 CYS 410 ASN 411 GLY 412 THR 413 ILE 414 THR 415 LEU 416 PRO 417 CYS 418 LYS 419 ILE 420 LYS 421 GLN 422 ILE 423 ILE 424 ASN 425 MET 426 TRP 427 GLN 428 GLY 429 THR 430 GLY 431 GLN 432 ALA 433 MET 434 TYR 435 ALA 436 PRO 437 PRO 438 ILE 439 ASP 440 GLY 441 LYS 442 ILE 443 ASN 444 CYS 445 VAL 446 SER 447 ASN 448 ILE 449 THR 450 GLY 451 ILE 452 LEU 453 LEU 454 THR 455 ARG 456 ASP 457 GLY 458 ASN 462 THR 463 SER 464 ASN 465 GLU 466 THR 467 PHE 468 ARG 469 PRO 470 GLY 471 GLY 472 GLY 473 ASN 474 ILE 475 LYS 476 ASP 477 ASN 478 TRP 479 ARG 480 SER 481 GLU 482 LEU 483 TYR 484 LYS 485 TYR 486 LYS 487 VAL 488 VAL 489 GLN 490 ILE 491 GLU 492
Unit 2	GLU 1 VAL 2 GLN 3 LEU 4 VAL 5 GLU 6 SER 7 GLY 8 PRO 9 GLY 10 LEU 11 VAL 12 LYS 13 PRO 14 LEU 15 GLU 16 THR 17 LEU 18 SER 19 LEU 20 THR 21 CYS 22 ALA 23 VAL 24 PRO 25 GLY 26 GLY 27 SER 28 ILE 29 ARG 30 ARG 31 ASN 32 TYR 33 TRP 34 SER 35 TRP 36 ILE 37 ARG 38 GLN 39 PRO 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 ILE 48 GLY 49 HIS 50 SER 51 TYR 52 GLY 52A SER 53 GLY 54 GLY 55 SER 56 THR 57 ASN 58 TYR 59 ASN 60 PRO 61 SER 62 LEU 63 GLU 64 SER 65 ARG 66 VAL 67 THR 68 LEU 69 SER 70 VAL 71 ASP 72 THR 73 SER 74 LYS 75 ASN 76 LEU 77 PHE 78 SER 79 LEU 80 LYS 81 LEU 82 THR 82A SER 82B VAL 82C THR 83 ALA 84 ALA 85 ASP 86 THR 87 ALA 88 VAL 89 TYR 90 TYR 91 CYS 92 ALA 93 ARG 94 THR 95 VAL 96 TRP 97 TYR 98 TYR 99 THR 100 SER 100A GLY 100B THR 100C HIS 100D TYR 100E PHE 100F ASP 101 HIS 102 TRP 103 GLY 104 GLN 105 GLY 106 VAL 107 LEU 108 VAL 109 THR 110 VAL 111 SER 112 SER 113 ALA 114 SER 115 THR 116 LYS 117 GLY 118 PRO 119 SER 120 VAL 121 PHE 122 PRO 123 LEU 124 ALA 125 PRO 126 SER 132 GLU 133 SER 134 THR 135 ALA 136 ALA 137 LEU 138 GLY 139 CYS 140 LEU 141 VAL 142 LYS 143 ASP 144 TYR 145 PHE 146 PRO 147 GLU 148 PRO 149 VAL 150 THR 151 VAL 152 SER 153 TRP 154 ASN 155 SER 156 GLY 157 SER 158 LEU 159 THR 160 SER 161 GLY 162 VAL 163 HIS 164 THR 165 PHE 166 PRO 167 ALA 168 VAL 169 LEU 170 GLN 171 SER 172 SER 173 GLY 174 LEU 175 TYR 176 SER 177 LEU 178 SER 179 SER 180 VAL 181 VAL 182 THR 183 VAL 184 PRO 185 SER 186 SER 187 SER 188 LEU 189 GLY 190 THR 191 GLN 192 THR 193 TYR 194 VAL 195 CYS 196 ASN 197 VAL 198 ASN 199 HIS 200 LYS 201 PRO 202 SER 203 ASN 204 THR 205 LYS 206 VAL 207 ASP 208 LYS 209 ARG 210 VAL 211 GLU 212
Unit 3	VAL 3 LEU 4 THR 5 GLN 6 PRO 7 PRO 8 SER 9 VAL 11 SER 12 ALA 13 ALA 14 PRO 15 GLY 16 GLN 17 LYS 18 VAL 19 THR 20 ILE 21 SER 22 CYS 23 SER 24 GLY 25 SER 26 SER 27 SER 27A ASN 27B ILE 28 GLY 29 ARG 30 SER 31 TYR 32 VAL 33 SER 34 TRP 35 TYR 36 GLN 37 GLN 38 VAL 39 PRO 40 GLY 41 ALA 42 ALA 43 PRO 44 LYS 45 LEU 46 LEU 47 ILE 48 TYR 49 ASP 50 THR 51 ASN 52 LYS 53 ARG 54 PRO 55 SER 56 GLY 57 VAL 58 SER 59 ASP 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 LYS 66 SER 67 GLY 68 SER 69 SER 70 ALA 71 SER 72 LEU 73 ALA 74 ILE 75 THR 76 GLY 77 LEU 78 GLN 79 THR 80 GLY 81 ASP 82 GLU 83 ALA 84 ASP 85 TYR 86 TYR 87 CYS 88 GLY 89 ALA 90 TRP 91 ASP 92 GLY 93 SER 94 LEU 95 ASN 95A VAL 95B HIS 96 ILE 97 PHE 98 GLY 99 SER 100 GLY 101 THR 102 LYS 103 LEU 104 THR 105 VAL 106 LEU 106A GLY 107 GLN 108 PRO 109 LYS 110 ALA 111 SER 112 PRO 113 LEU 114 VAL 115 THR 116 LEU 117 PHE 118 PRO 119 PRO 120 SER 121 SER 122 GLU 123 GLU 124 LEU 125 GLN 126 ALA 127 ASN 128 LYS 129 ALA 130 THR 131 LEU 132 VAL 133 CYS 134 LEU 135 ILE 136 SER 137 ASP 138 PHE 139 TYR 140 PRO 141 GLY 142 VAL 143 VAL 144 LYS 145 VAL 146 ALA 147 TRP 148 LYS 149 ALA 150 ASP 151 GLY 152 ASN 153 SER 154 VAL 155 ASN 156 THR 157 GLY 158 VAL 159 GLU 160 THR 161 THR 162 THR 163 PRO 164 SER 165 LYS 166 GLN 167 SER 168 ASN 169 ASN 170 LYS 171 TYR 172 ALA 173 ALA 174 SER 175 SER 176 TYR 177 LEU 178 SER 179 LEU 180 THR 181 SER 182 ASP 183 GLN 184 TRP 185 LYS 186 SER 187 HIS 188 LYS 189 SER 190 TYR 191 SER 192 CYS 193 GLN 194 VAL 195 THR 196 HIS 197 GLU 198 GLY 199 SER 200 THR 201 VAL 202 GLU 203 LYS 204 THR 205 VAL 206 ALA 207 PRO 208
Unit 4	MPT 1 ASN 2 LEU 3 HIS 4 PHE 5 CYS 6 GLN 7 LEU 8 ARG 9 CYS 10 LYS 11 SER 12 LEU 13 GLY 14 LEU 15 LEU 16 GLY 17 ARG 18 CYS 19 ALA 20 DPR 21 THR 22 PHE 23 CYS 24 ALA 25 CYS 26 VAL 27 NH2 28
Unit 5	VAL 44 TRP 45 LYS 46 ASP 47 ALA 48 ASP 49 THR 50 THR 51 LEU 52 PHE 53 CYS 54 ALA 55 SER 56 ASP 57 ALA 58 LYS 59 ALA 60 HIS 61 GLU 62 THR 63 GLU 64 VAL 65 HIS 66 ASN 67 VAL 68 TRP 69 ALA 70 THR 71 HIS 72 ALA 73 CYS 74 VAL 75 PRO 76 THR 77 ASP 78 PRO 79 ASN 80 PRO 81 GLN 82 GLU 83 ILE 84 HIS 85 LEU 86 GLU 87 ASN 88 VAL 89 THR 90 GLU 91 ASN 92 PHE 93 ASN 94 MET 95 TRP 96 LYS 97 ASN 98 ASN 99 MET 100 VAL 101 GLU 102 GLN 103 MET 104 GLN 105 GLU 106 ASP 107 VAL 108 ILE 109 SER 110 LEU 111 TRP 112 ASP 113 GLN 114 SER 115 LEU 116 GLN 117 PRO 118 CYS 119 VAL 120 LYS 121 LEU 122 THR 123 GLY 124 SER 199 VAL 200 ILE 201 LYS 202 GLN 203 ALA 204 CYS 205 PRO 206 LYS 207 ILE 208 SER 209 PHE 210 ASP 211 PRO 212 ILE 213 PRO 214 ILE 215 HIS 216 TYR 217 CYS 218 THR 219 PRO 220 ALA 221 GLY 222 TYR 223 VAL 224 ILE 225 LEU 226 LYS 227 CYS 228 ASN 229 ASP 230 LYS 231 ASN 232 PHE 233 ASN 234 GLY 235 THR 236 GLY 237 PRO 238 CYS 239 LYS 240 ASN 241 VAL 242 SER 243 SER 244 VAL 245 GLN 246 CYS 247 THR 248 HIS 249 GLY 250 ILE 251 LYS 252 PRO 253 VAL 254 VAL 255 SER 256 THR 257 GLN 258 LEU 259 LEU 260 LEU 261 ASN 262 GLY 263 SER 264 LEU 265 ALA 266 GLU 267 GLU 268 GLU 269 ILE 270 ILE 271 ILE 272 ARG 273 SER 274 GLU 275 ASN 276 LEU 277 THR 278 ASN 279 ASN 280 ALA 281 LYS 282 THR 283 ILE 284 ILE 285 VAL 286 HIS 287 LEU 288 ASN 289 LYS 290 SER 291 VAL 292 GLU 293 ILE 294 ASN 295 CYS 296 THR 297 ARG 298 PRO 299 SER 300 ASN 301 ASP 325 ILE 326 ARG 327 LYS 328 ALA 329 TYR 330 CYS 331 GLU 332 ILE 333 ASN 334 GLY 335 THR 336 LYS 337 TRP 338 ASN 339 LYS 340 VAL 341 LEU 342 LYS 343 GLN 344 VAL 345 THR 346 GLU 347 LYS 348 LEU 349 LYS 350 GLU 351 HIS 352 PHE 353 ASN 354 ASN 355 LYS 357 THR 358 ILE 359 ILE 360 PHE 361 GLN 362 PRO 363 PRO 364 SER 365 GLY 366 GLY 367 ASP 368 LEU 369 GLU 370 ILE 371 THR 372 MET 373 HIS 374 SER 375 PHE 376 ASN 377 CYS 378 ARG 379 GLY 380 GLU 381 PHE 382 PHE 383 TYR 384 CYS 385 ASN 386 THR 387 THR 388 GLN 389 LEU 390 PHE 391 ASN 392 ASN 393 THR 394 CYS 395 ILE 396 LYS 408 GLY 409 CYS 410 ASN 411 GLY 412 THR 413 ILE 414 THR 415 LEU 416 PRO 417 CYS 418 LYS 419 ILE 420 LYS 421 GLN 422 ILE 423 ILE 424 ASN 425 MET 426 TRP 427 GLN 428 GLY 429 THR 430 GLY 431 GLN 432 ALA 433 MET 434 TYR 435 ALA 436 PRO 437 PRO 438 ILE 439 ASP 440 GLY 441 LYS 442 ILE 443 ASN 444 CYS 445 VAL 446 SER 447 ASN 448 ILE 449 THR 450 GLY 451 ILE 452 LEU 453 LEU 454 THR 455 ARG 456 ASP 457 GLY 458 ASN 462 THR 463 SER 464 ASN 465 GLU 466 THR 467 PHE 468 ARG 469 PRO 470 GLY 471 GLY 472 GLY 473 ASN 474 ILE 475 LYS 476 ASP 477 ASN 478 TRP 479 ARG 480 SER 481 GLU 482 LEU 483 TYR 484 LYS 485 TYR 486 LYS 487 VAL 488 VAL 489 GLN 490 ILE 491 GLU 492
Unit 6	GLU 1 VAL 2 GLN 3 LEU 4 VAL 5 GLU 6 SER 7 GLY 8 PRO 9 GLY 10 LEU 11 VAL 12 LYS 13 PRO 14 LEU 15 GLU 16 THR 17 LEU 18 SER 19 LEU 20 THR 21 CYS 22 ALA 23 VAL 24 PRO 25 GLY 26 GLY 27 SER 28 ILE 29 ARG 30 ARG 31 ASN 32 TYR 33 TRP 34 SER 35 TRP 36 ILE 37 ARG 38 GLN 39 PRO 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 ILE 48 GLY 49 HIS 50 SER 51 TYR 52 GLY 52A SER 53 GLY 54 GLY 55 SER 56 THR 57 ASN 58 TYR 59 ASN 60 PRO 61 SER 62 LEU 63 GLU 64 SER 65 ARG 66 VAL 67 THR 68 LEU 69 SER 70 VAL 71 ASP 72 THR 73 SER 74 LYS 75 ASN 76 LEU 77 PHE 78 SER 79 LEU 80 LYS 81 LEU 82 THR 82A SER 82B VAL 82C THR 83 ALA 84 ALA 85 ASP 86 THR 87 ALA 88 VAL 89 TYR 90 TYR 91 CYS 92 ALA 93 ARG 94 THR 95 VAL 96 TRP 97 TYR 98 TYR 99 THR 100 SER 100A GLY 100B THR 100C HIS 100D TYR 100E PHE 100F ASP 101 HIS 102 TRP 103 GLY 104 GLN 105 GLY 106 VAL 107 LEU 108 VAL 109 THR 110 VAL 111 SER 112 SER 113 ALA 114 SER 115 THR 116 LYS 117 GLY 118 PRO 119 SER 120 VAL 121 PHE 122 PRO 123 LEU 124 ALA 125 PRO 126 SER 132 GLU 133 SER 134 THR 135 ALA 136 ALA 137 LEU 138 GLY 139 CYS 140 LEU 141 VAL 142 LYS 143 ASP 144 TYR 145 PHE 146 PRO 147 GLU 148 PRO 149 VAL 150 THR 151 VAL 152 SER 153 TRP 154 ASN 155 SER 156 GLY 157 SER 158 LEU 159 THR 160 SER 161 GLY 162 VAL 163 HIS 164 THR 165 PHE 166 PRO 167 ALA 168 VAL 169 LEU 170 GLN 171 SER 172 SER 173 GLY 174 LEU 175 TYR 176 SER 177 LEU 178 SER 179 SER 180 VAL 181 VAL 182 THR 183 VAL 184 PRO 185 SER 186 SER 187 SER 188 LEU 189 GLY 190 THR 191 GLN 192 THR 193 TYR 194 VAL 195 CYS 196 ASN 197 VAL 198 ASN 199 HIS 200 LYS 201 PRO 202 SER 203 ASN 204 THR 205 LYS 206 VAL 207 ASP 208 LYS 209 ARG 210 VAL 211 GLU 212
Unit 7	VAL 3 LEU 4 THR 5 GLN 6 PRO 7 PRO 8 SER 9 VAL 11 SER 12 ALA 13 ALA 14 PRO 15 GLY 16 GLN 17 LYS 18 VAL 19 THR 20 ILE 21 SER 22 CYS 23 SER 24 GLY 25 SER 26 SER 27 SER 27A ASN 27B ILE 28 GLY 29 ARG 30 SER 31 TYR 32 VAL 33 SER 34 TRP 35 TYR 36 GLN 37 GLN 38 VAL 39 PRO 40 GLY 41 ALA 42 ALA 43 PRO 44 LYS 45 LEU 46 LEU 47 ILE 48 TYR 49 ASP 50 THR 51 ASN 52 LYS 53 ARG 54 PRO 55 SER 56 GLY 57 VAL 58 SER 59 ASP 60 ARG 61 PHE 62 SER 63 GLY 64 SER 65 LYS 66 SER 67 GLY 68 SER 69 SER 70 ALA 71 SER 72 LEU 73 ALA 74 ILE 75 THR 76 GLY 77 LEU 78 GLN 79 THR 80 GLY 81 ASP 82 GLU 83 ALA 84 ASP 85 TYR 86 TYR 87 CYS 88 GLY 89 ALA 90 TRP 91 ASP 92 GLY 93 SER 94 LEU 95 ASN 95A VAL 95B HIS 96 ILE 97 PHE 98 GLY 99 SER 100 GLY 101 THR 102 LYS 103 LEU 104 THR 105 VAL 106 LEU 106A GLY 107 GLN 108 PRO 109 LYS 110 ALA 111 SER 112 PRO 113 LEU 114 VAL 115 THR 116 LEU 117 PHE 118 PRO 119 PRO 120 SER 121 SER 122 GLU 123 GLU 124 LEU 125 GLN 126 ALA 127 ASN 128 LYS 129 ALA 130 THR 131 LEU 132 VAL 133 CYS 134 LEU 135 ILE 136 SER 137 ASP 138 PHE 139 TYR 140 PRO 141 GLY 142 VAL 143 VAL 144 LYS 145 VAL 146 ALA 147 TRP 148 LYS 149 ALA 150 ASP 151 GLY 152 ASN 153 SER 154 VAL 155 ASN 156 THR 157 GLY 158 VAL 159 GLU 160 THR 161 THR 162 THR 163 PRO 164 SER 165 LYS 166 GLN 167 SER 168 ASN 169 ASN 170 LYS 171 TYR 172 ALA 173 ALA 174 SER 175 SER 176 TYR 177 LEU 178 SER 179 LEU 180 THR 181 SER 182 ASP 183 GLN 184 TRP 185 LYS 186 SER 187 HIS 188 LYS 189 SER 190 TYR 191 SER 192 CYS 193 GLN 194 VAL 195 THR 196 HIS 197 GLU 198 GLY 199 SER 200 THR 201 VAL 202 GLU 203 LYS 204 THR 205 VAL 206 ALA 207 PRO 208
Unit 8	MPT 1 ASN 2 LEU 3 HIS 4 PHE 5 CYS 6 GLN 7 LEU 8 ARG 9 CYS 10 LYS 11 SER 12 LEU 13 GLY 14 LEU 15 LEU 16 GLY 17 ARG 18 CYS 19 ALA 20 DPR 21 THR 22 PHE 23 CYS 24 ALA 25 CYS 26 VAL 27 NH2 28

Ligands

Unit 9	NAG 501 NAG 502 NAG 503 NAG 504 NAG 505 NAG 506 NAG 507 NAG 508 NAG 509
Unit 10	NAG 501 NAG 502 NAG 503 NAG 504 NAG 505 NAG 506 NAG 507 NAG 508 NAG 509