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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF YTHDF1 YTH DOMAIN
Keywords STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, RN PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4RCI     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   YTH DOMAIN-CONTAINING FAMILY PROTEIN 1  A 184 1451 0
2  Protein   YTH DOMAIN-CONTAINING FAMILY PROTEIN 1  B 182 1431 0
3  Protein   YTH DOMAIN-CONTAINING FAMILY PROTEIN 1  C 186 1476 0
4  Protein   YTH DOMAIN-CONTAINING FAMILY PROTEIN 1  D 183 1467 0
5  Ligand   YTH DOMAIN-CONTAINING FAMILY PROTEIN 1  A 15 0 15
6  Ligand   YTH DOMAIN-CONTAINING FAMILY PROTEIN 1  B 11 0 11
7  Ligand   YTH DOMAIN-CONTAINING FAMILY PROTEIN 1  C 18 0 18
8  Ligand   YTH DOMAIN-CONTAINING FAMILY PROTEIN 1  D 13 0 13
9 Water     281 0 281
total       1073 5825 338
Proteins
Unit 1 SER364 HIS365 PRO366 VAL367 LEU368 GLU369 LYS370 LEU371 LYS372 ALA373 ALA374 HIS375 SER376 TYR377 ASN378 PRO379 LYS380 GLU381 PHE382 GLU383 TRP384 ASN385 LEU386 LYS387 SER388 GLY389 ARG390 VAL391 PHE392 ILE393 ILE394 LYS395 SER396 TYR397 SER398 GLU399 ASP400 ASP401 ILE402 HIS403 ARG404 SER405 ILE406 LYS407 TYR408 SER409 ILE410 TRP411 CYS412 SER413 THR414 GLU415 HIS416 GLY417 ASN418 LYS419 ARG420 LEU421 ASP422 SER423 ALA424 PHE425 ARG426 CYS427 MET428 SER429 LYS431 GLY432 PRO433 VAL434 TYR435 LEU436 LEU437 PHE438 SER439 VAL440 ASN441 GLY442 SER443 GLY444 HIS445 PHE446 CYS447 GLY448 VAL449 ALA450 GLU451 MET452 LYS453 SER454 PRO455 VAL456 ASP457 TYR458 GLY459 TRP470 LYS471 GLY472 LYS473 PHE474 ASP475 VAL476 GLN477 TRP478 ILE479 PHE480 VAL481 LYS482 ASP483 VAL484 PRO485 ASN486 ASN487 GLN488 LEU489 ARG490 HIS491 ILE492 ARG493 LEU494 GLU495 ASN496 ASN497 ASP498 ASN499 LYS500 PRO501 VAL502 THR503 ASN504 SER505 ARG506 ASP507 THR508 GLN509 GLU510 VAL511 PRO512 LEU513 GLU514 LYS515 ALA516 LYS517 GLN518 VAL519 LEU520 LYS521 ILE522 ILE523 SER524 SER525 TYR526 LYS527 HIS528 THR529 THR530 SER531 ILE532 PHE533 ASP534 ASP535 PHE536 ALA537 HIS538 TYR539 GLU540 LYS541 ARG542 GLN543 GLU544 GLU545 GLU546 GLU547 VAL548 VAL549 ARG550 LYS551 GLU552 ARG553 GLN554 SER555 ARG556 ASN557 LYS558
Unit 2 HIS365 PRO366 VAL367 LEU368 GLU369 LYS370 LEU371 LYS372 ALA373 ALA374 HIS375 SER376 TYR377 ASN378 PRO379 LYS380 GLU381 PHE382 GLU383 TRP384 ASN385 LEU386 LYS387 SER388 GLY389 ARG390 VAL391 PHE392 ILE393 ILE394 LYS395 SER396 TYR397 SER398 GLU399 ASP400 ASP401 ILE402 HIS403 ARG404 SER405 ILE406 LYS407 TYR408 SER409 ILE410 TRP411 CYS412 SER413 THR414 GLU415 HIS416 GLY417 ASN418 LYS419 ARG420 LEU421 ASP422 SER423 ALA424 PHE425 ARG426 CYS427 MET428 LYS431 GLY432 PRO433 VAL434 TYR435 LEU436 LEU437 PHE438 SER439 VAL440 ASN441 GLY442 SER443 GLY444 HIS445 PHE446 CYS447 GLY448 VAL449 ALA450 GLU451 MET452 LYS453 SER454 PRO455 VAL456 ASP457 TYR458 TRP470 LYS471 GLY472 LYS473 PHE474 ASP475 VAL476 GLN477 TRP478 ILE479 PHE480 VAL481 LYS482 ASP483 VAL484 PRO485 ASN486 ASN487 GLN488 LEU489 ARG490 HIS491 ILE492 ARG493 LEU494 GLU495 ASN496 ASN497 ASP498 ASN499 LYS500 PRO501 VAL502 THR503 ASN504 SER505 ARG506 ASP507 THR508 GLN509 GLU510 VAL511 PRO512 LEU513 GLU514 LYS515 ALA516 LYS517 GLN518 VAL519 LEU520 LYS521 ILE522 ILE523 SER524 SER525 TYR526 LYS527 HIS528 THR529 THR530 SER531 ILE532 PHE533 ASP534 ASP535 PHE536 ALA537 HIS538 TYR539 GLU540 LYS541 ARG542 GLN543 GLU544 GLU545 GLU546 GLU547 VAL548 VAL549 ARG550 LYS551 GLU552 ARG553 GLN554 SER555 ARG556 ASN557 LYS558 GLN559
Unit 3 SER364 HIS365 PRO366 VAL367 LEU368 GLU369 LYS370 LEU371 LYS372 ALA373 ALA374 HIS375 SER376 TYR377 ASN378 PRO379 LYS380 GLU381 PHE382 GLU383 TRP384 ASN385 LEU386 LYS387 SER388 GLY389 ARG390 VAL391 PHE392 ILE393 ILE394 LYS395 SER396 TYR397 SER398 GLU399 ASP400 ASP401 ILE402 HIS403 ARG404 SER405 ILE406 LYS407 TYR408 SER409 ILE410 TRP411 CYS412 SER413 THR414 GLU415 HIS416 GLY417 ASN418 LYS419 ARG420 LEU421 ASP422 SER423 ALA424 PHE425 ARG426 CYS427 MET428 SER429 LYS431 GLY432 PRO433 VAL434 TYR435 LEU436 LEU437 PHE438 SER439 VAL440 ASN441 GLY442 SER443 GLY444 HIS445 PHE446 CYS447 GLY448 VAL449 ALA450 GLU451 MET452 LYS453 SER454 PRO455 VAL456 ASP457 TYR458 GLY459 ASP468 LYS469 TRP470 LYS471 GLY472 LYS473 PHE474 ASP475 VAL476 GLN477 TRP478 ILE479 PHE480 VAL481 LYS482 ASP483 VAL484 PRO485 ASN486 ASN487 GLN488 LEU489 ARG490 HIS491 ILE492 ARG493 LEU494 GLU495 ASN496 ASN497 ASP498 ASN499 LYS500 PRO501 VAL502 THR503 ASN504 SER505 ARG506 ASP507 THR508 GLN509 GLU510 VAL511 PRO512 LEU513 GLU514 LYS515 ALA516 LYS517 GLN518 VAL519 LEU520 LYS521 ILE522 ILE523 SER524 SER525 TYR526 LYS527 HIS528 THR529 THR530 SER531 ILE532 PHE533 ASP534 ASP535 PHE536 ALA537 HIS538 TYR539 GLU540 LYS541 ARG542 GLN543 GLU544 GLU545 GLU546 GLU547 VAL548 VAL549 ARG550 LYS551 GLU552 ARG553 GLN554 SER555 ARG556 ASN557 LYS558
Unit 4 SER364 HIS365 PRO366 VAL367 LEU368 GLU369 LYS370 LEU371 LYS372 ALA373 ALA374 HIS375 SER376 TYR377 ASN378 PRO379 LYS380 GLU381 PHE382 GLU383 TRP384 ASN385 LEU386 LYS387 SER388 GLY389 ARG390 VAL391 PHE392 ILE393 ILE394 LYS395 SER396 TYR397 SER398 GLU399 ASP400 ASP401 ILE402 HIS403 ARG404 SER405 ILE406 LYS407 TYR408 SER409 ILE410 TRP411 CYS412 SER413 THR414 GLU415 HIS416 GLY417 ASN418 LYS419 ARG420 LEU421 ASP422 SER423 ALA424 PHE425 ARG426 CYS427 MET428 SER429 LYS431 GLY432 PRO433 VAL434 TYR435 LEU436 LEU437 PHE438 SER439 VAL440 ASN441 GLY442 SER443 GLY444 HIS445 PHE446 CYS447 GLY448 VAL449 ALA450 GLU451 MET452 LYS453 SER454 PRO455 VAL456 ASP457 TYR458 TRP470 LYS471 GLY472 LYS473 PHE474 ASP475 VAL476 GLN477 TRP478 ILE479 PHE480 VAL481 LYS482 ASP483 VAL484 PRO485 ASN486 ASN487 GLN488 LEU489 ARG490 HIS491 ILE492 ARG493 LEU494 GLU495 ASN496 ASN497 ASP498 ASN499 LYS500 PRO501 VAL502 THR503 ASN504 SER505 ARG506 ASP507 THR508 GLN509 GLU510 VAL511 PRO512 LEU513 GLU514 LYS515 ALA516 LYS517 GLN518 VAL519 LEU520 LYS521 ILE522 ILE523 SER524 SER525 TYR526 LYS527 HIS528 THR529 THR530 SER531 ILE532 PHE533 ASP534 ASP535 PHE536 ALA537 HIS538 TYR539 GLU540 LYS541 ARG542 GLN543 GLU544 GLU545 GLU546 GLU547 VAL548 VAL549 ARG550 LYS551 GLU552 ARG553 GLN554 SER555 ARG556 ASN557 LYS558
Ligands
Unit 5 UNX601 UNX602 UNX603 UNX604 UNX605 UNX606 UNX607 UNX608 UNX609 UNX610 UNX611 UNX612 UNX613 UNX614 UNX615
Unit 6 UNX601 UNX602 UNX603 UNX604 UNX605 UNX606 UNX607 UNX608 UNX609 UNX610 UNX611
Unit 7 UNX601 UNX602 UNX603 UNX604 UNX605 UNX606 UNX607 UNX608 UNX609 UNX610 UNX611 UNX612 UNX613 UNX614 UNX615 UNX616 UNX617 UNX618
Unit 8 UNX601 UNX602 UNX603 UNX604 UNX605 UNX606 UNX607 UNX608 UNX609 UNX610 UNX611 UNX612 UNX613
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany