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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HUMAN TLR8 IN COMPLEX WITH HYBRID-2
Keywords RNA RECOGNITION, SSRNA, LEUCINE RICH REPEAT, RNA RECEPTOR, I IMMUNITY, GLYCOSYLATION, SECRETED, STRUCTURE-BASED LIGAND D VACCINE ADJUVANTS, ANTIVIRAL AND ANTITUMOR DRUG BINDING, RN PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4R6A     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   TOLL-LIKE RECEPTOR 8  A 746 6009 0
2  Protein   TOLL-LIKE RECEPTOR 8  B 740 5964 0
3  Ligand    C 4 0 50
4  Ligand    D 3 0 39
5  Ligand    E 3 0 39
6  Ligand    F 4 0 50
7  Ligand    G 3 0 39
8  Ligand    H 3 0 39
9  Ligand   TOLL-LIKE RECEPTOR 8  A 5 0 79
10  Ligand   TOLL-LIKE RECEPTOR 8  B 7 0 106
11 Water     402 0 402
total       1920 11973 843
Proteins
Unit 1 SER31 ARG32 SER33 TYR34 PRO35 CYS36 ASP37 GLU38 LYS39 LYS40 GLN41 ASN42 ASP43 SER44 VAL45 ILE46 ALA47 GLU48 CYS49 SER50 ASN51 ARG52 ARG53 LEU54 GLN55 GLU56 VAL57 PRO58 GLN59 THR60 VAL61 GLY62 LYS63 TYR64 VAL65 THR66 GLU67 LEU68 ASP69 LEU70 SER71 ASP72 ASN73 PHE74 ILE75 THR76 HIS77 ILE78 THR79 ASN80 GLU81 SER82 PHE83 GLN84 GLY85 LEU86 GLN87 ASN88 LEU89 THR90 LYS91 ILE92 ASN93 LEU94 ASN95 HIS96 ASN97 PRO98 ASN99 VAL100 ASN112 GLY113 LEU114 ASN115 ILE116 THR117 ASP118 GLY119 ALA120 PHE121 LEU122 ASN123 LEU124 LYS125 ASN126 LEU127 ARG128 GLU129 LEU130 LEU131 LEU132 GLU133 ASP134 ASN135 GLN136 LEU137 PRO138 GLN139 ILE140 PRO141 SER142 GLY143 LEU144 PRO145 GLU146 SER147 LEU148 THR149 GLU150 LEU151 SER152 LEU153 ILE154 GLN155 ASN156 ASN157 ILE158 TYR159 ASN160 ILE161 THR162 LYS163 GLU164 GLY165 ILE166 SER167 ARG168 LEU169 ILE170 ASN171 LEU172 LYS173 ASN174 LEU175 TYR176 LEU177 ALA178 TRP179 ASN180 CYS181 TYR182 PHE183 ASN184 LYS185 VAL186 CYS187 GLU188 LYS189 THR190 ASN191 ILE192 GLU193 ASP194 GLY195 VAL196 PHE197 GLU198 THR199 LEU200 THR201 ASN202 LEU203 GLU204 LEU205 LEU206 SER207 LEU208 SER209 PHE210 ASN211 SER212 LEU213 SER214 HIS215 VAL216 PRO217 PRO218 LYS219 LEU220 PRO221 SER222 SER223 LEU224 ARG225 LYS226 LEU227 PHE228 LEU229 SER230 ASN231 THR232 GLN233 ILE234 LYS235 TYR236 ILE237 SER238 GLU239 GLU240 ASP241 PHE242 LYS243 GLY244 LEU245 ILE246 ASN247 LEU248 THR249 LEU250 LEU251 ASP252 LEU253 SER254 GLY255 ASN256 CYS257 PRO258 ARG259 CYS260 PHE261 ASN262 ALA263 PRO264 PHE265 PRO266 CYS267 VAL268 PRO269 CYS270 ASP271 GLY272 GLY273 ALA274 SER275 ILE276 ASN277 ILE278 ASP279 ARG280 PHE281 ALA282 PHE283 GLN284 ASN285 LEU286 THR287 GLN288 LEU289 ARG290 TYR291 LEU292 ASN293 LEU294 SER295 SER296 THR297 SER298 LEU299 ARG300 LYS301 ILE302 ASN303 ALA304 ALA305 TRP306 PHE307 LYS308 ASN309 MET310 PRO311 HIS312 LEU313 LYS314 VAL315 LEU316 ASP317 LEU318 GLU319 PHE320 ASN321 TYR322 LEU323 VAL324 GLY325 GLU326 ILE327 ALA328 SER329 GLY330 ALA331 PHE332 LEU333 THR334 MET335 LEU336 PRO337 ARG338 LEU339 GLU340 ILE341 LEU342 ASP343 LEU344 SER345 PHE346 ASN347 TYR348 ILE349 LYS350 GLY351 SER352 TYR353 PRO354 GLN355 HIS356 ILE357 ASN358 ILE359 SER360 ARG361 ASN362 PHE363 SER364 LYS365 LEU366 LEU367 SER368 LEU369 ARG370 ALA371 LEU372 HIS373 LEU374 ARG375 GLY376 TYR377 VAL378 PHE379 GLN380 GLU381 LEU382 ARG383 GLU384 ASP385 ASP386 PHE387 GLN388 PRO389 LEU390 MET391 GLN392 LEU393 PRO394 ASN395 LEU396 SER397 THR398 ILE399 ASN400 LEU401 GLY402 ILE403 ASN404 PHE405 ILE406 LYS407 GLN408 ILE409 ASP410 PHE411 LYS412 LEU413 PHE414 GLN415 ASN416 PHE417 SER418 ASN419 LEU420 GLU421 ILE422 ILE423 TYR424 LEU425 SER426 GLU427 ASN428 ARG429 ILE430 SER431 PRO432 LEU433 PHE459 GLU460 PHE461 ASP462 PRO463 HIS464 SER465 ASN466 PHE467 TYR468 HIS469 PHE470 THR471 ARG472 PRO473 LEU474 ILE475 LYS476 PRO477 GLN478 CYS479 ALA480 ALA481 TYR482 GLY483 LYS484 ALA485 LEU486 ASP487 LEU488 SER489 LEU490 ASN491 SER492 ILE493 PHE494 PHE495 ILE496 GLY497 PRO498 ASN499 GLN500 PHE501 GLU502 ASN503 LEU504 PRO505 ASP506 ILE507 ALA508 CYS509 LEU510 ASN511 LEU512 SER513 ALA514 ASN515 SER516 ASN517 ALA518 GLN519 VAL520 LEU521 SER522 GLY523 THR524 GLU525 PHE526 SER527 ALA528 ILE529 PRO530 HIS531 VAL532 LYS533 TYR534 LEU535 ASP536 LEU537 THR538 ASN539 ASN540 ARG541 LEU542 ASP543 PHE544 ASP545 ASN546 ALA547 SER548 ALA549 LEU550 THR551 GLU552 LEU553 SER554 ASP555 LEU556 GLU557 VAL558 LEU559 ASP560 LEU561 SER562 TYR563 ASN564 SER565 HIS566 TYR567 PHE568 ARG569 ILE570 ALA571 GLY572 VAL573 THR574 HIS575 HIS576 LEU577 GLU578 PHE579 ILE580 GLN581 ASN582 PHE583 THR584 ASN585 LEU586 LYS587 VAL588 LEU589 ASN590 LEU591 SER592 HIS593 ASN594 ASN595 ILE596 TYR597 THR598 LEU599 THR600 ASP601 LYS602 TYR603 ASN604 LEU605 GLU606 SER607 LYS608 SER609 LEU610 VAL611 GLU612 LEU613 VAL614 PHE615 SER616 GLY617 ASN618 ARG619 LEU620 ASP621 ILE622 LEU623 TRP624 ASN625 ASP626 ASP627 ASP628 ASN629 ARG630 TYR631 ILE632 SER633 ILE634 PHE635 LYS636 GLY637 LEU638 LYS639 ASN640 LEU641 THR642 ARG643 LEU644 ASP645 LEU646 SER647 LEU648 ASN649 ARG650 LEU651 LYS652 HIS653 ILE654 PRO655 ASN656 GLU657 ALA658 PHE659 LEU660 ASN661 LEU662 PRO663 ALA664 SER665 LEU666 THR667 GLU668 LEU669 HIS670 ILE671 ASN672 ASP673 ASN674 MET675 LEU676 LYS677 PHE678 PHE679 ASN680 TRP681 THR682 LEU683 LEU684 GLN685 GLN686 PHE687 PRO688 ARG689 LEU690 GLU691 LEU692 LEU693 ASP694 LEU695 ARG696 GLY697 ASN698 LYS699 LEU700 LEU701 PHE702 LEU703 THR704 ASP705 SER706 LEU707 SER708 ASP709 PHE710 THR711 SER712 SER713 LEU714 ARG715 THR716 LEU717 LEU718 LEU719 SER720 HIS721 ASN722 ARG723 ILE724 SER725 HIS726 LEU727 PRO728 SER729 GLY730 PHE731 LEU732 SER733 GLU734 VAL735 SER736 SER737 LEU738 LYS739 HIS740 LEU741 ASP742 LEU743 SER744 SER745 ASN746 LEU747 LEU748 LYS749 THR750 ILE751 ASN752 LYS753 SER754 ALA755 THR762 LYS763 LEU764 SER765 MET766 LEU767 GLU768 LEU769 HIS770 GLY771 ASN772 PRO773 PHE774 GLU775 CYS776 THR777 CYS778 ASP779 ILE780 GLY781 ASP782 PHE783 ARG784 ARG785 TRP786 MET787 ASP788 GLU789 HIS790 LEU791 ASN792 VAL793 LYS794 ILE795 PRO796 ARG797 LEU798 VAL799 ASP800 VAL801 ILE802 CYS803 ALA804 SER805 PRO806 GLY807 ASP808 GLN809 ARG810 GLY811 LYS812 SER813 ILE814 VAL815 SER816 LEU817 GLU818
Unit 2 SER31 ARG32 SER33 TYR34 PRO35 CYS36 ASP37 GLU38 LYS39 LYS40 GLN41 VAL45 ILE46 ALA47 GLU48 CYS49 SER50 ASN51 ARG52 ARG53 LEU54 GLN55 GLU56 VAL57 PRO58 GLN59 THR60 VAL61 GLY62 LYS63 TYR64 VAL65 THR66 GLU67 LEU68 ASP69 LEU70 SER71 ASP72 ASN73 PHE74 ILE75 THR76 HIS77 ILE78 THR79 ASN80 GLU81 SER82 PHE83 GLN84 GLY85 LEU86 GLN87 ASN88 LEU89 THR90 LYS91 ILE92 ASN93 LEU94 ASN95 HIS96 ASN97 PRO98 ASN99 VAL100 GLY113 LEU114 ASN115 ILE116 THR117 ASP118 GLY119 ALA120 PHE121 LEU122 ASN123 LEU124 LYS125 ASN126 LEU127 ARG128 GLU129 LEU130 LEU131 LEU132 GLU133 ASP134 ASN135 GLN136 LEU137 PRO138 GLN139 ILE140 PRO141 SER142 GLY143 LEU144 PRO145 GLU146 SER147 LEU148 THR149 GLU150 LEU151 SER152 LEU153 ILE154 GLN155 ASN156 ASN157 ILE158 TYR159 ASN160 ILE161 THR162 LYS163 GLU164 GLY165 ILE166 SER167 ARG168 LEU169 ILE170 ASN171 LEU172 LYS173 ASN174 LEU175 TYR176 LEU177 ALA178 TRP179 ASN180 CYS181 TYR182 PHE183 ASN184 LYS185 VAL186 CYS187 GLU188 LYS189 THR190 ASN191 ILE192 GLU193 ASP194 GLY195 VAL196 PHE197 GLU198 THR199 LEU200 THR201 ASN202 LEU203 GLU204 LEU205 LEU206 SER207 LEU208 SER209 PHE210 ASN211 SER212 LEU213 SER214 HIS215 VAL216 PRO217 PRO218 LYS219 LEU220 PRO221 SER222 SER223 LEU224 ARG225 LYS226 LEU227 PHE228 LEU229 SER230 ASN231 THR232 GLN233 ILE234 LYS235 TYR236 ILE237 SER238 GLU239 GLU240 ASP241 PHE242 LYS243 GLY244 LEU245 ILE246 ASN247 LEU248 THR249 LEU250 LEU251 ASP252 LEU253 SER254 GLY255 ASN256 CYS257 PRO258 ARG259 CYS260 PHE261 ASN262 ALA263 PRO264 PHE265 PRO266 CYS267 VAL268 PRO269 CYS270 ASP271 GLY272 GLY273 ALA274 SER275 ILE276 ASN277 ILE278 ASP279 ARG280 PHE281 ALA282 PHE283 GLN284 ASN285 LEU286 THR287 GLN288 LEU289 ARG290 TYR291 LEU292 ASN293 LEU294 SER295 SER296 THR297 SER298 LEU299 ARG300 LYS301 ILE302 ASN303 ALA304 ALA305 TRP306 PHE307 LYS308 ASN309 MET310 PRO311 HIS312 LEU313 LYS314 VAL315 LEU316 ASP317 LEU318 GLU319 PHE320 ASN321 TYR322 LEU323 VAL324 GLY325 GLU326 ILE327 ALA328 SER329 GLY330 ALA331 PHE332 LEU333 THR334 MET335 LEU336 PRO337 ARG338 LEU339 GLU340 ILE341 LEU342 ASP343 LEU344 SER345 PHE346 ASN347 TYR348 ILE349 LYS350 GLY351 SER352 TYR353 PRO354 GLN355 HIS356 ILE357 ASN358 ILE359 SER360 ARG361 ASN362 PHE363 SER364 LYS365 LEU366 LEU367 SER368 LEU369 ARG370 ALA371 LEU372 HIS373 LEU374 ARG375 GLY376 TYR377 VAL378 PHE379 GLN380 GLU381 LEU382 ARG383 GLU384 ASP385 ASP386 PHE387 GLN388 PRO389 LEU390 MET391 GLN392 LEU393 PRO394 ASN395 LEU396 SER397 THR398 ILE399 ASN400 LEU401 GLY402 ILE403 ASN404 PHE405 ILE406 LYS407 GLN408 ILE409 ASP410 PHE411 LYS412 LEU413 PHE414 GLN415 ASN416 PHE417 SER418 ASN419 LEU420 GLU421 ILE422 ILE423 TYR424 LEU425 SER426 GLU427 ASN428 ARG429 ILE430 SER431 PRO432 LEU433 PHE459 GLU460 PHE461 ASP462 PRO463 HIS464 SER465 ASN466 PHE467 TYR468 HIS469 PHE470 THR471 ARG472 PRO473 LEU474 ILE475 LYS476 PRO477 GLN478 CYS479 ALA480 ALA481 TYR482 GLY483 LYS484 ALA485 LEU486 ASP487 LEU488 SER489 LEU490 ASN491 SER492 ILE493 PHE494 PHE495 ILE496 GLY497 PRO498 ASN499 GLN500 PHE501 GLU502 ASN503 LEU504 PRO505 ASP506 ILE507 ALA508 CYS509 LEU510 ASN511 LEU512 SER513 ALA514 ASN515 SER516 ASN517 ALA518 GLN519 VAL520 LEU521 SER522 GLY523 THR524 GLU525 PHE526 SER527 ALA528 ILE529 PRO530 HIS531 VAL532 LYS533 TYR534 LEU535 ASP536 LEU537 THR538 ASN539 ASN540 ARG541 LEU542 ASP543 PHE544 ASP545 ASN546 ALA547 SER548 ALA549 LEU550 THR551 GLU552 LEU553 SER554 ASP555 LEU556 GLU557 VAL558 LEU559 ASP560 LEU561 SER562 TYR563 ASN564 SER565 HIS566 TYR567 PHE568 ARG569 ILE570 ALA571 GLY572 VAL573 THR574 HIS575 HIS576 LEU577 GLU578 PHE579 ILE580 GLN581 ASN582 PHE583 THR584 ASN585 LEU586 LYS587 VAL588 LEU589 ASN590 LEU591 SER592 HIS593 ASN594 ASN595 ILE596 TYR597 THR598 LEU599 THR600 ASP601 LYS602 TYR603 ASN604 LEU605 GLU606 SER607 LYS608 SER609 LEU610 VAL611 GLU612 LEU613 VAL614 PHE615 SER616 GLY617 ASN618 ARG619 LEU620 ASP621 ILE622 LEU623 TRP624 ASN625 ASP626 ASP627 ASP628 ASN629 ARG630 TYR631 ILE632 SER633 ILE634 PHE635 LYS636 GLY637 LEU638 LYS639 ASN640 LEU641 THR642 ARG643 LEU644 ASP645 LEU646 SER647 LEU648 ASN649 ARG650 LEU651 LYS652 HIS653 ILE654 PRO655 ASN656 GLU657 ALA658 PHE659 LEU660 ASN661 LEU662 PRO663 ALA664 SER665 LEU666 THR667 GLU668 LEU669 HIS670 ILE671 ASN672 ASP673 ASN674 MET675 LEU676 LYS677 PHE678 PHE679 ASN680 TRP681 THR682 LEU683 LEU684 GLN685 GLN686 PHE687 PRO688 ARG689 LEU690 GLU691 LEU692 LEU693 ASP694 LEU695 ARG696 GLY697 ASN698 LYS699 LEU700 LEU701 PHE702 LEU703 THR704 ASP705 SER706 LEU707 SER708 ASP709 PHE710 THR711 SER712 SER713 LEU714 ARG715 THR716 LEU717 LEU718 LEU719 SER720 HIS721 ASN722 ARG723 ILE724 SER725 HIS726 LEU727 PRO728 SER729 GLY730 PHE731 LEU732 SER733 GLU734 VAL735 SER736 SER737 LEU738 LYS739 HIS740 LEU741 ASP742 LEU743 SER744 SER745 ASN746 LEU747 LEU748 LYS749 THR750 ILE751 ASN752 LYS753 SER754 THR761 THR762 LYS763 LEU764 SER765 MET766 LEU767 GLU768 LEU769 HIS770 GLY771 ASN772 PRO773 PHE774 GLU775 CYS776 THR777 CYS778 ASP779 ILE780 GLY781 ASP782 PHE783 ARG784 ARG785 TRP786 MET787 ASP788 GLU789 HIS790 LEU791 ASN792 VAL793 LYS794 ILE795 PRO796 ARG797 LEU798 VAL799 ASP800 VAL801 ILE802 CYS803 ALA804 SER805 PRO806 GLY807 ASP808 GLN809 ARG810 GLY811 LYS812 SER813 ILE814 VAL815 SER816
Ligands
Unit 3 NAG1 NAG2 BMA3 MAN4
Unit 4 NAG1 NAG2 BMA3
Unit 5 NAG1 NAG2 BMA3
Unit 6 NAG1 NAG2 BMA3 MAN4
Unit 7 NAG1 NAG2 BMA3
Unit 8 NAG1 NAG2 BMA3
Unit 9 NAG905 NAG909 NAG913 NAG914 HB2915
Unit 10 HB2901 NAG902 NAG907 NAG911 NAG912 NAG916 NAG917
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany